mRNA_H-canaliculatus_F_contig12899.2415.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12899.2415.1
Unique NamemRNA_H-canaliculatus_F_contig12899.2415.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12899.2415.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 9.820e-24
Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    1 SETILRWLNEYIALDHFKLDGRGSGCREWILSEDDLLNKLLTHLKTEKRRTVSKAVEYINNTLLTSEGTSMSEARMKDVYGIVKPVSRGLVHFWLRRADCKFDRATQSYYTDGHNKEEVIASRLVYLAKLRRLSLRQ 411
            + TIL WL ++     FKLD RG   R+WI+SE+DL ++L+  ++ +KR TV     YIN  L  +E   +S       Y +  PVS    H W+    CK++RAT+S+YTDGH K++V+  R  Y+   R+L+LRQ
Sbjct:  130 ASTILGWLRDFRGHGGFKLDSRGVHERDWIMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEIGDLSRLLS---YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQ 263          
BLAST of mRNA_H-canaliculatus_F_contig12899.2415.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.700e-23
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 1
Query:    1 SETILRWLNEYIALDHFKLDGRGSGCREWILSEDDLLNKLLTHLKTEKRRTVSKAVEYINNTLLTSEGTSMSEARMKDVYGIVKPVSRGLVHFWLRRADCKFDRATQSYYTDGHNKEEVIASRLVYLAKLRRLSLRQ 411
            + TIL WL ++     FK D RG   R+WI+SE+DL ++L+  ++T+KR TV     YIN  L   E   +S       Y +  PVS    H W+    CK++RAT+S+YTDGH K++V+  R  Y+   R+L+LRQ
Sbjct:  208 ASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRLTVKDVQNYINQWLFAYEIGDLSRLLS---YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQ 341          
BLAST of mRNA_H-canaliculatus_F_contig12899.2415.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 9.140e-23
Identity = 52/135 (38.52%), Postives = 80/135 (59.26%), Query Frame = 1
Query:    7 TILRWLNEYIALDHFKLDGRGSGCREWILSEDDLLNKLLTHLKTEKRRTVSKAVEYINNTLLTSEGTSMSEARMKDVYGIVKPVSRGLVHFWLRRADCKFDRATQSYYTDGHNKEEVIASRLVYLAKLRRLSLRQ 411
            TILRWL ++     F+ D RG+   +WI+SE+DL + LL  + ++ R T+    +YIN  LL  +   +S       Y +  PVS    H W+ R  C+++RAT+S+YTD H K+EV+  R  Y+ K R+++LRQ
Sbjct:  318 TILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRFTIKDVCKYINGPLLQDDKEDLSRLH---AYQVNLPVSMSTTHSWMIRLGCRYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQ 449          
BLAST of mRNA_H-canaliculatus_F_contig12899.2415.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.650e-22
Identity = 54/137 (39.42%), Postives = 80/137 (58.39%), Query Frame = 1
Query:    1 SETILRWLNEYIALDHFKLDGRGSGCREWILSEDDLLNKLLTHLKTEKRRTVSKAVEYINNTLLTSEGTSMSEARMKDVYGIVKPVSRGLVHFWLRRADCKFDRATQSYYTDGHNKEEVIASRLVYLAKLRRLSLRQ 411
            + TIL WL ++      K D RG   R+WI+SE+DL ++L+  ++T+KR TV     YIN  L  +E   +S       Y +  PVS    H W+    CK++RAT+S+YTDGH K++V+  R  Y+   R+L+LRQ
Sbjct:  270 ASTILGWLRDFRGHGGSKRDSRGVHERDWIMSEEDLKDELVMWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLS---YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQ 403          
BLAST of mRNA_H-canaliculatus_F_contig12899.2415.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.060e-21
Identity = 50/135 (37.04%), Postives = 80/135 (59.26%), Query Frame = 1
Query:    7 TILRWLNEYIALDHFKLDGRGSGCREWILSEDDLLNKLLTHLKTEKRRTVSKAVEYINNTLLTSEGTSMSEARMKDVYGIVKPVSRGLVHFWLRRADCKFDRATQSYYTDGHNKEEVIASRLVYLAKLRRLSLRQ 411
            TILRWL ++     F+ D RG+   +WI+SE+DL + LL  + ++ R T+ +  +YIN  LL  +     +      Y +  PVS   +H W+ R  C+++R T+S+YTD H K+EV+  R  Y+ K R+++LRQ
Sbjct:  271 TILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRFTIKEVCKYINGPLLQDD--KEEDLSRLHAYQVNLPVSMSTMHSWMIRLGCRYERGTKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQ 403          
BLAST of mRNA_H-canaliculatus_F_contig12899.2415.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.780e-21
Identity = 52/137 (37.96%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    1 SETILRWLNEYIALDHFKLDGRGSGCREWILSEDDLLNKLLTHLKTEKRRTVSKAVEYINNTLLTSEGTSMSEARMKDVYGIVKPVSRGLVHFWLRRADCKFDRATQSYYTDGHNKEEVIASRLVYLAKLRRLSLRQ 411
            + TIL WL ++     FK D RG   R+WI+SE+D  ++L+  ++T+KR TV     YIN  L  ++   +S       Y +  PVS    H W+    CK++RAT+S+YTDGH K++V+  R  Y+   R+L+L Q
Sbjct:  385 ASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDPKDELIKWMRTQKRLTVKDVQNYINQWLFANQIGDLSRLLS---YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALWQ 518          
BLAST of mRNA_H-canaliculatus_F_contig12899.2415.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.770e-21
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    1 SETILRWLNEYIALDHFKLDGRGSGCREWILSEDDLLNKLLTHLKTEKRRTVSKAVEYINNTLLTSEGTSMSEARMKDVYGIVKPVSRGLVHFWLRRADCKFDRATQSYYTDGHNKEEVIASR 369
            + TIL WL ++     FK D RG   R+WI+SE+DL ++L+  ++T+KR TV     YIN  L  +E   +S       Y +  PVS    H W+    CK++RAT+S+YTDGH K++V+  R
Sbjct:  319 ASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDQLIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLS---YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYR 438          
BLAST of mRNA_H-canaliculatus_F_contig12899.2415.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.850e-21
Identity = 52/137 (37.96%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    1 SETILRWLNEYIALDHFKLDGRGSGCREWILSEDDLLNKLLTHLKTEKRRTVSKAVEYINNTLLTSEGTSMSEARMKDVYGIVKPVSRGLVHFWLRRADCKFDRATQSYYTDGHNKEEVIASRLVYLAKLRRLSLRQ 411
            + T+L WL ++     FK D R    R+WI+S++DL ++L+  ++T+KR TV     YIN  L  +E   +S      V     PVS    H W+    CK++RAT+S+YTDGH K++V+  R  Y+   R+L+LRQ
Sbjct:  228 ASTVLGWLRDFRGHGGFKRDSRRVHERDWIMSKEDLKDELIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSHQVN---LPVSMVTTHSWIIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQ 361          
BLAST of mRNA_H-canaliculatus_F_contig12899.2415.1 vs. uniprot
Match: A0A6H5KP29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP29_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.590e-20
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   49 FKLDGRGSGCREWILSEDDLLNKLLTHLKTEKRRTVSKAVEYINNTLLTSEGTSMSEARMKDVYGIVKPVSRGLVHFWLRRADCKFDRATQSYYTDGHNKEEVIASRLVYLAKLRRLSLRQ 411
            FK D RG   R+WI+SE+DL ++L+  ++T+KR TV     YIN  L  SE   +S       Y +  PVS    H W+    CK+++AT+S+YTDGH ++ V+  R  Y+   R+L+LRQ
Sbjct:   58 FKRDSRGVHRRDWIMSEEDLKDELIKWMRTQKRLTVKDVQNYINQWLFASEIGDLSTLLS---YQVNLPVSMSTTHSWMIALGCKYEQATKSFYTDGHEEKVVVVYRGKYIDVKRKLALRQ 175          
BLAST of mRNA_H-canaliculatus_F_contig12899.2415.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.060e-17
Identity = 48/137 (35.04%), Postives = 75/137 (54.74%), Query Frame = 1
Query:    1 SETILRWLNEYIALDHFKLDGRGSGCREWILSEDDLLNKLLTHLKTEKRRTVSKAVEYINNTLLTSEGTSMSEARMKDVYGIVKPVSRGLVHFWLRRADCKFDRATQSYYTDGHNKEEVIASRLVYLAKLRRLSLRQ 411
            + TIL WL ++     FK D RG   R+WI+SE+DL ++L+  ++T+KR              LT++  ++             PVS    H W+    CK++RAT+S+YTDGH K++V+  R  Y+   R+L+LRQ
Sbjct:  399 ASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDELIKWMRTQKR--------------LTAKDVNL-------------PVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQ 508          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12899.2415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JRV8_9PHAE9.820e-2440.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J4M4_9PHAE2.700e-2340.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L611_9PHAE9.140e-2338.52Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMT5_9PHAE1.650e-2239.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMQ7_9PHAE1.060e-2137.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7P7_9PHAE2.780e-2137.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN6_9PHAE3.770e-2139.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI16_9PHAE4.850e-2137.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP29_9PHAE6.590e-2040.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2T4_9PHAE4.060e-1735.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12899contigH-canaliculatus_F_contig12899:591..1001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929020.997466-CDS-H-canaliculatus_F_contig12899:590..10011622929020.997466-CDS-H-canaliculatus_F_contig12899:590..1001Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12899 591..1001 -
1696845650.215933-CDS-H-canaliculatus_F_contig12899:590..10011696845650.215933-CDS-H-canaliculatus_F_contig12899:590..1001Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12899 591..1001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12899.2415.1prot_H-canaliculatus_F_contig12899.2415.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12899 591..1001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12899.2415.1

>prot_H-canaliculatus_F_contig12899.2415.1 ID=prot_H-canaliculatus_F_contig12899.2415.1|Name=mRNA_H-canaliculatus_F_contig12899.2415.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=137bp
SETILRWLNEYIALDHFKLDGRGSGCREWILSEDDLLNKLLTHLKTEKRR
TVSKAVEYINNTLLTSEGTSMSEARMKDVYGIVKPVSRGLVHFWLRRADC
KFDRATQSYYTDGHNKEEVIASRLVYLAKLRRLSLRQ
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mRNA from alignment at H-canaliculatus_F_contig12899:591..1001-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12899.2415.1 ID=mRNA_H-canaliculatus_F_contig12899.2415.1|Name=mRNA_H-canaliculatus_F_contig12899.2415.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=411bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12899:591..1001- (Hapterophycus canaliculatus Oshoro5f female)
TCCGAGACGATACTACGTTGGCTCAACGAGTACATCGCGCTCGACCACTT CAAACTGGACGGGCGAGGATCGGGCTGCCGGGAGTGGATCCTGAGCGAAG ACGACCTCTTGAACAAGCTACTGACGCACTTAAAAACGGAAAAGCGTCGG ACTGTTTCTAAGGCTGTCGAGTACATCAACAACACGCTCCTTACATCAGA AGGGACGAGCATGAGCGAAGCGAGGATGAAGGACGTCTACGGCATCGTCA AGCCTGTATCGCGGGGGCTGGTGCACTTTTGGCTGCGCCGTGCGGATTGC AAGTTCGACCGCGCGACTCAGTCATACTACACCGACGGACACAACAAGGA GGAAGTAATCGCGTCGCGCCTGGTGTACTTGGCGAAACTACGGCGTCTTT CCCTGCGGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12899:591..1001-

>mRNA_H-canaliculatus_F_contig12899.2415.1 ID=mRNA_H-canaliculatus_F_contig12899.2415.1|Name=mRNA_H-canaliculatus_F_contig12899.2415.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=822bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12899:591..1001- (Hapterophycus canaliculatus Oshoro5f female)
TCCGAGACGATACTACGTTGGCTCAACGAGTACATCGCGCTCGACCACTT
CAAACTGGACGGGCGAGGATCGGGCTGCCGGGAGTGGATCCTGAGCGAAG
ACGACCTCTTGAACAAGCTACTGACGCACTTAAAAACGGAAAAGCGTCGG
ACTGTTTCTAAGGCTGTCGAGTACATCAACAACACGCTCCTTACATCAGA
AGGGACGAGCATGAGCGAAGCGAGGATGAAGGACGTCTACGGCATCGTCA
AGCCTGTATCGCGGGGGCTGGTGCACTTTTGGCTGCGCCGTGCGGATTGC
AAGTTCGACCGCGCGACTCAGTCATACTACACCGACGGACACAACAAGGA
GGAAGTAATCGCGTCGCGCCTGGTGTACTTGGCGAAACTACGGCGTCTTT
CCCTGCGGCAGTCCGAGACGATACTACGTTGGCTCAACGAGTACATCGCG
CTCGACCACTTCAAACTGGACGGGCGAGGATCGGGCTGCCGGGAGTGGAT
CCTGAGCGAAGACGACCTCTTGAACAAGCTACTGACGCACTTAAAAACGG
AAAAGCGTCGGACTGTTTCTAAGGCTGTCGAGTACATCAACAACACGCTC
CTTACATCAGAAGGGACGAGCATGAGCGAAGCGAGGATGAAGGACGTCTA
CGGCATCGTCAAGCCTGTATCGCGGGGGCTGGTGCACTTTTGGCTGCGCC
GTGCGGATTGCAAGTTCGACCGCGCGACTCAGTCATACTACACCGACGGA
CACAACAAGGAGGAAGTAATCGCGTCGCGCCTGGTGTACTTGGCGAAACT
ACGGCGTCTTTCCCTGCGGCAG
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