mRNA_H-canaliculatus_F_contig12895.2414.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12895.2414.1
Unique NamemRNA_H-canaliculatus_F_contig12895.2414.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12895.2414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12895contigH-canaliculatus_F_contig12895:290..603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size315
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929020.9223483-UTR-H-canaliculatus_F_contig12895:289..2911622929020.9223483-UTR-H-canaliculatus_F_contig12895:289..291Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12895 290..291 +
1696845650.1876335-UTR-H-canaliculatus_F_contig12895:289..2911696845650.1876335-UTR-H-canaliculatus_F_contig12895:289..291Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12895 290..291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929020.9467635-CDS-H-canaliculatus_F_contig12895:291..6031622929020.9467635-CDS-H-canaliculatus_F_contig12895:291..603Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12895 292..603 +
1696845650.2052214-CDS-H-canaliculatus_F_contig12895:291..6031696845650.2052214-CDS-H-canaliculatus_F_contig12895:291..603Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12895 292..603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12895.2414.1prot_H-canaliculatus_F_contig12895.2414.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12895 292..603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12895.2414.1

>prot_H-canaliculatus_F_contig12895.2414.1 ID=prot_H-canaliculatus_F_contig12895.2414.1|Name=mRNA_H-canaliculatus_F_contig12895.2414.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
MLCASSTSHRRTIALPSSRLRERRESATLGESATRKSEFFQFFLLSAVFL
GHVRLLRPLSSDVYSCASLRNSSTVDKEVIAVLITFLACLLACPSVGQAS
ILVC
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mRNA from alignment at H-canaliculatus_F_contig12895:290..603+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12895.2414.1 ID=mRNA_H-canaliculatus_F_contig12895.2414.1|Name=mRNA_H-canaliculatus_F_contig12895.2414.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=314bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12895:290..603+ (Hapterophycus canaliculatus Oshoro5f female)
GGATGTTGTGTGCTTCGAGTACATCGCACCGTCGCACCATCGCACTTCCG
TCTAGTAGGCTGCGTGAACGAAGAGAAAGTGCAACACTGGGAGAGAGTGC
AACTCGCAAGAGTGAATTTTTCCAGTTTTTTCTTCTTAGTGCCGTGTTTC
TTGGCCATGTGCGGTTACTACGGCCACTGTCCTCAGATGTATACTCCTGT
GCATCCTTGCGTAATTCCAGTACTGTAGACAAGGAGGTTATCGCGGTGTT
GATCACGTTTCTCGCTTGCCTTCTCGCTTGCCCAAGTGTTGGTCAAGCCA
GTATCCTCGTTTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12895:290..603+

>mRNA_H-canaliculatus_F_contig12895.2414.1 ID=mRNA_H-canaliculatus_F_contig12895.2414.1|Name=mRNA_H-canaliculatus_F_contig12895.2414.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12895:290..603+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGTGTGCTTCGAGTACATCGCACCGTCGCACCATCGCACTTCCGTC
TAGTAGGCTGCGTGAACGAAGAGAAAGTGCAACACTGGGAGAGAGTGCAA
CTCGCAAGAGTGAATTTTTCCAGTTTTTTCTTCTTAGTGCCGTGTTTCTT
GGCCATGTGCGGTTACTACGGCCACTGTCCTCAGATGTATACTCCTGTGC
ATCCTTGCGTAATTCCAGTACTGTAGACAAGGAGGTTATCGCGGTGTTGA
TCACGTTTCTCGCTTGCCTTCTCGCTTGCCCAAGTGTTGGTCAAGCCAGT
ATCCTCGTTTGCATGTTGTGTGCTTCGAGTACATCGCACCGTCGCACCAT
CGCACTTCCGTCTAGTAGGCTGCGTGAACGAAGAGAAAGTGCAACACTGG
GAGAGAGTGCAACTCGCAAGAGTGAATTTTTCCAGTTTTTTCTTCTTAGT
GCCGTGTTTCTTGGCCATGTGCGGTTACTACGGCCACTGTCCTCAGATGT
ATACTCCTGTGCATCCTTGCGTAATTCCAGTACTGTAGACAAGGAGGTTA
TCGCGGTGTTGATCACGTTTCTCGCTTGCCTTCTCGCTTGCCCAAGTGTT
GGTCAAGCCAGTATCCTCGTTTGC
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