mRNA_H-canaliculatus_F_contig12893.2413.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12893.2413.1
Unique NamemRNA_H-canaliculatus_F_contig12893.2413.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12893.2413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12893contigH-canaliculatus_F_contig12893:116..625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size511
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929020.8639522-CDS-H-canaliculatus_F_contig12893:115..4421622929020.8639522-CDS-H-canaliculatus_F_contig12893:115..442Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12893 116..442 +
1696845650.1568015-CDS-H-canaliculatus_F_contig12893:115..4421696845650.1568015-CDS-H-canaliculatus_F_contig12893:115..442Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12893 116..442 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929020.8785784-UTR-H-canaliculatus_F_contig12893:442..6251622929020.8785784-UTR-H-canaliculatus_F_contig12893:442..625Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12893 443..625 +
1696845650.1653614-UTR-H-canaliculatus_F_contig12893:442..6251696845650.1653614-UTR-H-canaliculatus_F_contig12893:442..625Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12893 443..625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12893.2413.1prot_H-canaliculatus_F_contig12893.2413.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12893 116..442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12893.2413.1

>prot_H-canaliculatus_F_contig12893.2413.1 ID=prot_H-canaliculatus_F_contig12893.2413.1|Name=mRNA_H-canaliculatus_F_contig12893.2413.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
PPSDRVIASVTTFSSLQVFGRCGGVRLFVLFYPVWVPGIAGTAWRFVVSY
LSHAASATERKLVAGVPLAPLGDAGDFFHFPFFPQRRSSLKGWRERGRER
ESYRYSCK*
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mRNA from alignment at H-canaliculatus_F_contig12893:116..625+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12893.2413.1 ID=mRNA_H-canaliculatus_F_contig12893.2413.1|Name=mRNA_H-canaliculatus_F_contig12893.2413.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=510bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12893:116..625+ (Hapterophycus canaliculatus Oshoro5f female)
CCACCGTCAGACCGCGTCATAGCTAGCGTAACTACATTTTCTTCTCTTCA
GGTCTTTGGACGTTGTGGAGGCGTCCGCTTGTTCGTCTTGTTTTACCCCG
TGTGGGTCCCGGGAATCGCGGGGACGGCGTGGCGATTCGTCGTTTCGTAC
CTGTCGCACGCCGCATCTGCGACGGAGCGAAAGTTGGTTGCTGGTGTGCC
TTTGGCCCCTCTCGGGGACGCGGGGGACTTTTTTCATTTCCCTTTTTTTC
CGCAACGAAGGAGTTCCCTCAAGGGATGGCGAGAGAGAGGGAGAGAGAGG
GAGAGCTATCGTTATTCATGCAAGTGAAGAGCTTTTCTTGTTGTGGTTGT
TCAACGCATCCTACCCGTTCTCTCTATGAACTAAAAAACTTTTTTTTGCA
TGCTCTCAAATGAGACCTCTGCTTCTCCGAAGCCCTCGTCTGTGCCGAGA
ACGTGGGAAAACCTCACTGTACAGTAAGGAATTCAACAAAATTTTCTTCT
AAAAAGGTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12893:116..625+

>mRNA_H-canaliculatus_F_contig12893.2413.1 ID=mRNA_H-canaliculatus_F_contig12893.2413.1|Name=mRNA_H-canaliculatus_F_contig12893.2413.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12893:116..625+ (Hapterophycus canaliculatus Oshoro5f female)
CCACCGTCAGACCGCGTCATAGCTAGCGTAACTACATTTTCTTCTCTTCA
GGTCTTTGGACGTTGTGGAGGCGTCCGCTTGTTCGTCTTGTTTTACCCCG
TGTGGGTCCCGGGAATCGCGGGGACGGCGTGGCGATTCGTCGTTTCGTAC
CTGTCGCACGCCGCATCTGCGACGGAGCGAAAGTTGGTTGCTGGTGTGCC
TTTGGCCCCTCTCGGGGACGCGGGGGACTTTTTTCATTTCCCTTTTTTTC
CGCAACGAAGGAGTTCCCTCAAGGGATGGCGAGAGAGAGGGAGAGAGAGG
GAGAGCTATCGTTATTCATGCAAGTGACCACCGTCAGACCGCGTCATAGC
TAGCGTAACTACATTTTCTTCTCTTCAGGTCTTTGGACGTTGTGGAGGCG
TCCGCTTGTTCGTCTTGTTTTACCCCGTGTGGGTCCCGGGAATCGCGGGG
ACGGCGTGGCGATTCGTCGTTTCGTACCTGTCGCACGCCGCATCTGCGAC
GGAGCGAAAGTTGGTTGCTGGTGTGCCTTTGGCCCCTCTCGGGGACGCGG
GGGACTTTTTTCATTTCCCTTTTTTTCCGCAACGAAGGAGTTCCCTCAAG
GGATGGCGAGAGAGAGGGAGAGAGAGGGAGAGCTATCGTTATTCATGCAA
GTGA
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