mRNA_H-canaliculatus_F_contig12890.2411.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12890.2411.1
Unique NamemRNA_H-canaliculatus_F_contig12890.2411.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12890.2411.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.580e-26
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 KVDRGGIECALCHNGHSREYPLPGRVVGSHPLMDGTSQLWVHDGCALYSPMVCRDE 168
            KVDRG ++CALCH GH+RE PLPG++VG HPLMDG SQLWVHD CALYSPMVCRD+
Sbjct: 1241 KVDRGTLKCALCHGGHTRERPLPGKIVGPHPLMDGASQLWVHDWCALYSPMVCRDD 1296
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BLAST of mRNA_H-canaliculatus_F_contig12890.2411.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.580e-26
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 KVDRGGIECALCHNGHSREYPLPGRVVGSHPLMDGTSQLWVHDGCALYSPMVCRDE 168
            KVDRG ++CALCH GH+RE PLPG++VG HPLMDG SQLWVHD CALYSPMVCRD+
Sbjct: 1051 KVDRGTLKCALCHGGHTRERPLPGKIVGPHPLMDGASQLWVHDWCALYSPMVCRDD 1106
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BLAST of mRNA_H-canaliculatus_F_contig12890.2411.1 vs. uniprot
Match: A0A4D9DDC7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDC7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 9.580e-11
Identity = 28/50 (56.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 KVDRGGIECALCHNGHSREYPLPGRVVGSHPLMDGTSQLWVHDGCALYSP 150
            +VDR  + CALC  GHS   PLPG V+GSHPL      +WVHD CA +SP
Sbjct: 1376 EVDRRTLLCALCGKGHSEAQPLPGPVLGSHPLKIRDRPVWVHDDCAHWSP 1425
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BLAST of mRNA_H-canaliculatus_F_contig12890.2411.1 vs. uniprot
Match: A0A6G0XRZ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRZ7_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.500e-6
Identity = 22/57 (38.60%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:    4 VDRGGIECALCHNG-HSREYPLPGRVVGSHPLMDGTSQLWVHDGCALYSPMVCRDEG 171
              R  I C  C  G     + LPG ++G HPL++G  +++VHD CA+ SP+    EG
Sbjct: 1040 AQRSSIVCGFCGRGDQGGMFALPGSLMGDHPLVNGQQRVFVHDQCAISSPLSFFHEG 1096
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BLAST of mRNA_H-canaliculatus_F_contig12890.2411.1 vs. uniprot
Match: A0A5D6Y257_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y257_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.410e-5
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    7 DRGG---IECALCHNGHSREY-PLPGRVVGSHPLMDGTSQLWVHDGCALYSPMVCRDEG 171
            D GG   I CA CH G+      LP   +G HPL++G+ +L+VHD CA+ SP+ C + G
Sbjct: 1210 DDGGEVLIPCAFCHGGNDGGVLKLPADGMGVHPLINGSQRLFVHDQCAIASPL-CFNRG 1267
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BLAST of mRNA_H-canaliculatus_F_contig12890.2411.1 vs. uniprot
Match: K3W7P8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7P8_GLOUD)

HSP 1 Score: 49.3 bits (116), Expect = 2.630e-5
Identity = 23/52 (44.23%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   19 IECALCHNGHSREY-PLPGRVVGSHPLMDGTSQLWVHDGCALYSPMVCRDEG 171
            I CA CH G       LPG  +G +PL++G  +L+VHD CA+ SP+ C + G
Sbjct: 1106 IPCAFCHGGDDGSVLKLPGDSMGIYPLINGAQRLFVHDQCAIASPL-CFNRG 1156
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BLAST of mRNA_H-canaliculatus_F_contig12890.2411.1 vs. uniprot
Match: A0A8K1CCN8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN8_PYTOL)

HSP 1 Score: 48.5 bits (114), Expect = 4.930e-5
Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 1 
Query:   19 IECALCHNGHSREY-PLPGRVVGSHPLMDGTSQLWVHDGCALYSPMVCRDEG 171
            I CA C  G       LPG  +G HPL+ GT +L+VHD CA+ SP+  +  G
Sbjct: 1167 IVCAFCQQGDDGGVLKLPGEEMGVHPLIFGTQRLFVHDQCAIASPLCFKRGG 1218
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12890.2411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LEP1_ECTSI2.580e-2678.57WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5KTA2_9PHAE2.580e-2678.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DDC7_9STRA9.580e-1156.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6G0XRZ7_9STRA7.500e-638.60Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A5D6Y257_9STRA1.410e-544.07Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3W7P8_GLOUD2.630e-544.23Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CCN8_PYTOL4.930e-544.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12890contigH-canaliculatus_F_contig12890:2547..2717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.2e-21
Seed eggNOG ortholog2880.D8LEP1
KEGG koko:K02606,ko:K11797,ko:K11798
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG2319@1,COG5141@1,KOG0644@2759,KOG0955@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929020.747573-CDS-H-canaliculatus_F_contig12890:2546..27171622929020.747573-CDS-H-canaliculatus_F_contig12890:2546..2717Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12890 2547..2717 +
1696845650.1210628-CDS-H-canaliculatus_F_contig12890:2546..27171696845650.1210628-CDS-H-canaliculatus_F_contig12890:2546..2717Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12890 2547..2717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12890.2411.1prot_H-canaliculatus_F_contig12890.2411.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12890 2547..2717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12890.2411.1

>prot_H-canaliculatus_F_contig12890.2411.1 ID=prot_H-canaliculatus_F_contig12890.2411.1|Name=mRNA_H-canaliculatus_F_contig12890.2411.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
KVDRGGIECALCHNGHSREYPLPGRVVGSHPLMDGTSQLWVHDGCALYSP
MVCRDEG
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mRNA from alignment at H-canaliculatus_F_contig12890:2547..2717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12890.2411.1 ID=mRNA_H-canaliculatus_F_contig12890.2411.1|Name=mRNA_H-canaliculatus_F_contig12890.2411.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=171bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12890:2547..2717+ (Hapterophycus canaliculatus Oshoro5f female)
AAGGTCGATCGAGGAGGGATCGAGTGCGCGCTGTGCCACAACGGGCACTC
GCGGGAGTATCCGCTCCCGGGGAGGGTGGTGGGGTCTCACCCGCTGATGG
ACGGGACCTCTCAGTTGTGGGTGCACGATGGATGCGCCCTGTACAGCCCC
ATGGTGTGCCGGGACGAGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12890:2547..2717+

>mRNA_H-canaliculatus_F_contig12890.2411.1 ID=mRNA_H-canaliculatus_F_contig12890.2411.1|Name=mRNA_H-canaliculatus_F_contig12890.2411.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12890:2547..2717+ (Hapterophycus canaliculatus Oshoro5f female)
AAGGTCGATCGAGGAGGGATCGAGTGCGCGCTGTGCCACAACGGGCACTC
GCGGGAGTATCCGCTCCCGGGGAGGGTGGTGGGGTCTCACCCGCTGATGG
ACGGGACCTCTCAGTTGTGGGTGCACGATGGATGCGCCCTGTACAGCCCC
ATGGTGTGCCGGGACGAGGGGAAGGTCGATCGAGGAGGGATCGAGTGCGC
GCTGTGCCACAACGGGCACTCGCGGGAGTATCCGCTCCCGGGGAGGGTGG
TGGGGTCTCACCCGCTGATGGACGGGACCTCTCAGTTGTGGGTGCACGAT
GGATGCGCCCTGTACAGCCCCATGGTGTGCCGGGACGAGGGG
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