mRNA_H-canaliculatus_F_contig12890.2410.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12890.2410.1
Unique NamemRNA_H-canaliculatus_F_contig12890.2410.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12890.2410.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.730e-21
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:   31 VPLEQYFTSDYRELVRDQRQHVVDAFTQQPPHLAQTGDLVDFIGNAHPEDVQ 186
            VPLEQYFTSDYREL+RD+R +VVDAFTQQPPHLAQTG LVD IGNA+PEDVQ
Sbjct:  665 VPLEQYFTSDYRELLRDERHNVVDAFTQQPPHLAQTGLLVDHIGNAYPEDVQ 716
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BLAST of mRNA_H-canaliculatus_F_contig12890.2410.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.760e-16
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:   31 VPLEQYFTSDYRELVRDQRQHVVDAFTQQPPHLAQTGDLVDFIG 162
            VPLEQYFTSDYREL+RD+R +VVDAFTQQPPHLAQTG LVD IG
Sbjct:  958 VPLEQYFTSDYRELLRDERHNVVDAFTQQPPHLAQTGLLVDHIG 1001
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BLAST of mRNA_H-canaliculatus_F_contig12890.2410.1 vs. uniprot
Match: A0A2G8JKY8_STIJA (Putative bromodomain and WD repeat-containing protein 3 (Fragment) n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JKY8_STIJA)

HSP 1 Score: 59.7 bits (143), Expect = 6.880e-9
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   31 VPLEQYFTSDYRELVRDQRQHVVDAFTQQPPHLAQTGDLVDFIGNAHPEDVQ 186
            VP EQYF +DYR LVRD    V+D  TQQ PHL     LVD  GN HP+++Q
Sbjct:  258 VPTEQYFHTDYRPLVRDANNFVLDEQTQQAPHLMPPPFLVDIDGNPHPKELQ 309
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BLAST of mRNA_H-canaliculatus_F_contig12890.2410.1 vs. uniprot
Match: A0A224YUQ4_9ACAR (Bromodomain and WD repeat domain containing protein 1/3 n=9 Tax=Rhipicephalinae TaxID=426437 RepID=A0A224YUQ4_9ACAR)

HSP 1 Score: 58.2 bits (139), Expect = 2.420e-8
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    4 TGRPWWWSQVPLEQYFTSDYRELVRDQRQHVVDAFTQQPPHLAQTGDLVDFIGNAHPEDVQ 186
            +G P+   +VP EQ+F +DYR L+RD +QHV+D  TQ  PHL     LVD  GN +P D+Q
Sbjct:  549 SGDPY--KKVPDEQFFHTDYRPLIRDAQQHVLDEQTQCAPHLMPPPFLVDIDGNPYPPDLQ 607
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BLAST of mRNA_H-canaliculatus_F_contig12890.2410.1 vs. uniprot
Match: A0A8B7XPF4_ACAPL (PH-interacting protein-like isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XPF4_ACAPL)

HSP 1 Score: 57.8 bits (138), Expect = 3.310e-8
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   22 WSQVPLEQYFTSDYRELVRDQRQHVVDAFTQQPPHLAQTGDLVDFIGNAHP 174
            +S+VP EQ+F +DYR L+RD   +V+D  TQQ PHL     LVD  GN HP
Sbjct:  554 YSKVPFEQFFHTDYRPLMRDNNNYVLDEQTQQAPHLMPPPFLVDMDGNPHP 604
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BLAST of mRNA_H-canaliculatus_F_contig12890.2410.1 vs. uniprot
Match: UPI0018D701CC (bromodomain and WD repeat-containing protein 3-like isoform X1 n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D701CC)

HSP 1 Score: 57.8 bits (138), Expect = 3.310e-8
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   22 WSQVPLEQYFTSDYRELVRDQRQHVVDAFTQQPPHLAQTGDLVDFIGNAHP 174
            +S+VP+EQ+F +DYR L+RD   +V+D  TQQ PHL     LVD  GN HP
Sbjct:  555 YSKVPVEQFFHTDYRPLMRDANNYVLDEQTQQAPHLMPPPFLVDMDGNPHP 605
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BLAST of mRNA_H-canaliculatus_F_contig12890.2410.1 vs. uniprot
Match: UPI00193A6AAD (bromodomain and WD repeat-containing protein 1-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A6AAD)

HSP 1 Score: 57.8 bits (138), Expect = 3.310e-8
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    7 GRPWWWSQVPLEQYFTSDYRELVRDQRQHVVDAFTQQPPHLAQTGDLVDFIGNAHPEDVQ 186
            G+P+  ++ P++Q+F +DYR L+RDQ  +V+D  TQQ PHL     LVD  GN +P D+Q
Sbjct:  569 GKPY--TKSPVQQFFHTDYRPLIRDQHGYVLDEQTQQAPHLMPPPFLVDVDGNPYPTDLQ 626
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BLAST of mRNA_H-canaliculatus_F_contig12890.2410.1 vs. uniprot
Match: A0A7R8WI44_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WI44_9CRUS)

HSP 1 Score: 57.0 bits (136), Expect = 6.200e-8
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   31 VPLEQYFTSDYRELVRDQRQHVVDAFTQQPPHLAQTGDLVDFIGNAHP 174
            +P + +F +DYR L+RD R HV+DA TQ+PPHL     LVD  GN +P
Sbjct:  564 IPKDLFFHTDYRNLMRDDRGHVLDAITQRPPHLMAPPFLVDLDGNPYP 611
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BLAST of mRNA_H-canaliculatus_F_contig12890.2410.1 vs. uniprot
Match: A0A3M6TXB2_POCDA (Uncharacterized protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TXB2_POCDA)

HSP 1 Score: 56.6 bits (135), Expect = 8.470e-8
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   22 WSQVPLEQYFTSDYRELVRDQRQHVVDAFTQQPPHLAQTGDLVDFIGNAHP 174
            +SQVP EQ+F +DYR L+RD   +V+D  TQ  PHL     LVD  GN HP
Sbjct:  545 YSQVPSEQFFHTDYRPLIRDSNNYVLDEQTQTDPHLMPPPFLVDVDGNPHP 595
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BLAST of mRNA_H-canaliculatus_F_contig12890.2410.1 vs. uniprot
Match: UPI00155A4FAA (bromodomain and WD repeat-containing protein 3 isoform X1 n=4 Tax=obscura subgroup TaxID=32357 RepID=UPI00155A4FAA)

HSP 1 Score: 56.6 bits (135), Expect = 8.490e-8
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   22 WSQVPLEQYFTSDYRELVRDQRQHVVDAFTQQPPHLAQTGDLVDFIGNAHP 174
            +S +P E +F +DYR LVRD + HVVD  TQ  PHL +  +LVD  GN HP
Sbjct:  551 YSMLPTELFFHTDYRPLVRDSQNHVVDEQTQIMPHLMEPPNLVDADGNPHP 601
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12890.2410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTA2_9PHAE1.730e-2186.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP1_ECTSI1.760e-1686.36WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
A0A2G8JKY8_STIJA6.880e-955.77Putative bromodomain and WD repeat-containing prot... [more]
A0A224YUQ4_9ACAR2.420e-849.18Bromodomain and WD repeat domain containing protei... [more]
A0A8B7XPF4_ACAPL3.310e-852.94PH-interacting protein-like isoform X1 n=2 Tax=Aca... [more]
UPI0018D701CC3.310e-852.94bromodomain and WD repeat-containing protein 3-lik... [more]
UPI00193A6AAD3.310e-846.67bromodomain and WD repeat-containing protein 1-lik... [more]
A0A7R8WI44_9CRUS6.200e-852.08Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A3M6TXB2_POCDA8.470e-852.94Uncharacterized protein n=2 Tax=Pocillopora damico... [more]
UPI00155A4FAA8.490e-852.94bromodomain and WD repeat-containing protein 3 iso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12890contigH-canaliculatus_F_contig12890:769..954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog2880.D8LEP1
KEGG koko:K02606,ko:K11797,ko:K11798
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG2319@1,COG5141@1,KOG0644@2759,KOG0955@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929020.4795961-CDS-H-canaliculatus_F_contig12890:768..9541622929020.4795961-CDS-H-canaliculatus_F_contig12890:768..954Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12890 769..954 +
1696845650.1069107-CDS-H-canaliculatus_F_contig12890:768..9541696845650.1069107-CDS-H-canaliculatus_F_contig12890:768..954Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12890 769..954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12890.2410.1prot_H-canaliculatus_F_contig12890.2410.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12890 769..954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12890.2410.1

>prot_H-canaliculatus_F_contig12890.2410.1 ID=prot_H-canaliculatus_F_contig12890.2410.1|Name=mRNA_H-canaliculatus_F_contig12890.2410.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=62bp
MTGRPWWWSQVPLEQYFTSDYRELVRDQRQHVVDAFTQQPPHLAQTGDLV
DFIGNAHPEDVQ
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mRNA from alignment at H-canaliculatus_F_contig12890:769..954+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12890.2410.1 ID=mRNA_H-canaliculatus_F_contig12890.2410.1|Name=mRNA_H-canaliculatus_F_contig12890.2410.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=186bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12890:769..954+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGGGACGGCCGTGGTGGTGGTCGCAGGTCCCGCTCGAGCAGTACTT
CACGTCGGACTACCGGGAGCTGGTCCGCGACCAGAGGCAGCACGTGGTGG
ACGCCTTCACGCAGCAGCCGCCCCACCTCGCCCAGACCGGGGACCTGGTG
GACTTCATCGGCAACGCTCACCCCGAGGATGTTCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12890:769..954+

>mRNA_H-canaliculatus_F_contig12890.2410.1 ID=mRNA_H-canaliculatus_F_contig12890.2410.1|Name=mRNA_H-canaliculatus_F_contig12890.2410.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12890:769..954+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGGGACGGCCGTGGTGGTGGTCGCAGGTCCCGCTCGAGCAGTACTT
CACGTCGGACTACCGGGAGCTGGTCCGCGACCAGAGGCAGCACGTGGTGG
ACGCCTTCACGCAGCAGCCGCCCCACCTCGCCCAGACCGGGGACCTGGTG
GACTTCATCGGCAACGCTCACCCCGAGGATGTTCAGATGACGGGACGGCC
GTGGTGGTGGTCGCAGGTCCCGCTCGAGCAGTACTTCACGTCGGACTACC
GGGAGCTGGTCCGCGACCAGAGGCAGCACGTGGTGGACGCCTTCACGCAG
CAGCCGCCCCACCTCGCCCAGACCGGGGACCTGGTGGACTTCATCGGCAA
CGCTCACCCCGAGGATGTTCAG
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