mRNA_H-canaliculatus_F_contig1289.2409.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1289.2409.1
Unique NamemRNA_H-canaliculatus_F_contig1289.2409.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1289.2409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1289contigH-canaliculatus_F_contig1289:12834..13484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size651
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1289.2409.1prot_H-canaliculatus_F_contig1289.2409.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1289 12986..13417 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929019.8200207-UTR-H-canaliculatus_F_contig1289:12833..129851622929019.8200207-UTR-H-canaliculatus_F_contig1289:12833..12985Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1289 12834..12985 +
1696845649.770341-UTR-H-canaliculatus_F_contig1289:12833..129851696845649.770341-UTR-H-canaliculatus_F_contig1289:12833..12985Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1289 12834..12985 +
1622929019.8502824-UTR-H-canaliculatus_F_contig1289:13417..134841622929019.8502824-UTR-H-canaliculatus_F_contig1289:13417..13484Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1289 13418..13484 +
1696845649.7936003-UTR-H-canaliculatus_F_contig1289:13417..134841696845649.7936003-UTR-H-canaliculatus_F_contig1289:13417..13484Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1289 13418..13484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929019.8349538-CDS-H-canaliculatus_F_contig1289:12985..134171622929019.8349538-CDS-H-canaliculatus_F_contig1289:12985..13417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 12986..13417 +
1696845649.7828958-CDS-H-canaliculatus_F_contig1289:12985..134171696845649.7828958-CDS-H-canaliculatus_F_contig1289:12985..13417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 12986..13417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1289.2409.1

>prot_H-canaliculatus_F_contig1289.2409.1 ID=prot_H-canaliculatus_F_contig1289.2409.1|Name=mRNA_H-canaliculatus_F_contig1289.2409.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=144bp
MPPFSSCRSSLTADASWTEALSNINIVPPREKGRANRHTAASRVTPPPCS
TVNEYRNPRQRVSLRNRDVSTIEAEAVEHQSGRTCCLPALGRKASLSQTT
PGVLSSQNPLSDKLLVSPTAGKRKEQAWKVSQRTLLTRCGDYV*
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mRNA from alignment at H-canaliculatus_F_contig1289:12834..13484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1289.2409.1 ID=mRNA_H-canaliculatus_F_contig1289.2409.1|Name=mRNA_H-canaliculatus_F_contig1289.2409.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=651bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1289:12834..13484+ (Hapterophycus canaliculatus Oshoro5f female)
CCGATCAGACCTTGCAGCGTCGTCTGACGAAGCAGAAAACAAGGCCAAGG
ACGTACGAGGCGGTACAAACGAGTCAAGACAGGACAGGCCACCACAACGC
CAGCACAGCACGGACGAAGGAAGCACGTCCCTCACGCCCTTCCAAACTCT
CGATGCCTCCTTTTTCGAGCTGCCGATCTTCACTTACCGCAGATGCTTCC
TGGACGGAGGCGTTAAGCAACATCAACATCGTACCACCGCGAGAAAAAGG
ACGGGCAAACAGGCACACAGCGGCGTCGCGTGTCACGCCCCCCCCCTGCT
CTACAGTGAATGAATATCGGAACCCCCGGCAGAGGGTTTCTTTAAGAAAC
AGAGATGTCTCGACGATAGAGGCGGAGGCCGTGGAACACCAGAGCGGGAG
GACGTGCTGCTTGCCTGCCTTAGGGCGAAAGGCGTCTCTCTCTCAGACGA
CACCCGGTGTGCTCAGCTCACAAAACCCCCTTTCAGATAAACTACTCGTG
TCTCCGACTGCTGGGAAGCGGAAGGAACAAGCTTGGAAAGTCAGTCAACG
GACTCTGCTAACCAGATGTGGGGACTACGTCTAGCTGCTTATGCCTCGAT
GGAGAAAACCGCCACGCCGGTATCTCGGTGTTGATTCTCGTCGGACTCCC
T
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1289:12834..13484+

>mRNA_H-canaliculatus_F_contig1289.2409.1 ID=mRNA_H-canaliculatus_F_contig1289.2409.1|Name=mRNA_H-canaliculatus_F_contig1289.2409.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=864bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1289:12834..13484+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTCCTTTTTCGAGCTGCCGATCTTCACTTACCGCAGATGCTTCCTG
GACGGAGGCGTTAAGCAACATCAACATCGTACCACCGCGAGAAAAAGGAC
GGGCAAACAGGCACACAGCGGCGTCGCGTGTCACGCCCCCCCCCTGCTCT
ACAGTGAATGAATATCGGAACCCCCGGCAGAGGGTTTCTTTAAGAAACAG
AGATGTCTCGACGATAGAGGCGGAGGCCGTGGAACACCAGAGCGGGAGGA
CGTGCTGCTTGCCTGCCTTAGGGCGAAAGGCGTCTCTCTCTCAGACGACA
CCCGGTGTGCTCAGCTCACAAAACCCCCTTTCAGATAAACTACTCGTGTC
TCCGACTGCTGGGAAGCGGAAGGAACAAGCTTGGAAAGTCAGTCAACGGA
CTCTGCTAACCAGATGTGGGGACTACGTCTAGATGCCTCCTTTTTCGAGC
TGCCGATCTTCACTTACCGCAGATGCTTCCTGGACGGAGGCGTTAAGCAA
CATCAACATCGTACCACCGCGAGAAAAAGGACGGGCAAACAGGCACACAG
CGGCGTCGCGTGTCACGCCCCCCCCCTGCTCTACAGTGAATGAATATCGG
AACCCCCGGCAGAGGGTTTCTTTAAGAAACAGAGATGTCTCGACGATAGA
GGCGGAGGCCGTGGAACACCAGAGCGGGAGGACGTGCTGCTTGCCTGCCT
TAGGGCGAAAGGCGTCTCTCTCTCAGACGACACCCGGTGTGCTCAGCTCA
CAAAACCCCCTTTCAGATAAACTACTCGTGTCTCCGACTGCTGGGAAGCG
GAAGGAACAAGCTTGGAAAGTCAGTCAACGGACTCTGCTAACCAGATGTG
GGGACTACGTCTAG
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