mRNA_H-canaliculatus_F_contig1289.2406.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1289.2406.1
Unique NamemRNA_H-canaliculatus_F_contig1289.2406.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1289.2406.1 vs. uniprot
Match: D7FKA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA5_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 6.880e-23
Identity = 62/103 (60.19%), Postives = 70/103 (67.96%), Query Frame = 3 
Query:   30 MEHDMEHREDDTEQRIREIEAQQDQXXXXXXXXXXXXXXXXXXXXXXQTRLEQTLADLQSESAARKAAEAKAKEGAGVLEEKEAAVARVDQLTRQAAAQADSY 338
            M+HDME   DDTEQRIREIE +QD+                      Q RL+Q LA LQSE++AR+AAE KA+E A VLEEKEAAVARVDQLTRQAAAQ DSY
Sbjct:    1 MDHDMEQNIDDTEQRIREIEGEQDKLKSQLAERDGTVKGLESSNQELQARLDQALAGLQSETSAREAAEGKAREAAKVLEEKEAAVARVDQLTRQAAAQGDSY 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1289.2406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKA5_ECTSI6.880e-2360.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1289contigH-canaliculatus_F_contig1289:2077..4744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_003370.1
Exons3
Model size339
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1289.2406.1prot_H-canaliculatus_F_contig1289.2406.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1289 2077..4715 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929019.7003028-CDS-H-canaliculatus_F_contig1289:2076..22061622929019.7003028-CDS-H-canaliculatus_F_contig1289:2076..2206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 2077..2206 -
1696845649.730688-CDS-H-canaliculatus_F_contig1289:2076..22061696845649.730688-CDS-H-canaliculatus_F_contig1289:2076..2206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 2077..2206 -
1622929019.717023-CDS-H-canaliculatus_F_contig1289:3208..33001622929019.717023-CDS-H-canaliculatus_F_contig1289:3208..3300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 3209..3300 -
1696845649.7417681-CDS-H-canaliculatus_F_contig1289:3208..33001696845649.7417681-CDS-H-canaliculatus_F_contig1289:3208..3300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 3209..3300 -
1622929019.731774-CDS-H-canaliculatus_F_contig1289:4628..47151622929019.731774-CDS-H-canaliculatus_F_contig1289:4628..4715Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 4629..4715 -
1696845649.7504-CDS-H-canaliculatus_F_contig1289:4628..47151696845649.7504-CDS-H-canaliculatus_F_contig1289:4628..4715Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1289 4629..4715 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929019.748612-UTR-H-canaliculatus_F_contig1289:4715..47441622929019.748612-UTR-H-canaliculatus_F_contig1289:4715..4744Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1289 4716..4744 -
1696845649.760096-UTR-H-canaliculatus_F_contig1289:4715..47441696845649.760096-UTR-H-canaliculatus_F_contig1289:4715..4744Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1289 4716..4744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1289.2406.1

>prot_H-canaliculatus_F_contig1289.2406.1 ID=prot_H-canaliculatus_F_contig1289.2406.1|Name=mRNA_H-canaliculatus_F_contig1289.2406.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
MEHDMEHREDDTEQRIREIEAQQDQLKSQLHERDGKVKELEGSNQEIQTR
LEQTLADLQSESAARKAAEAKAKEGAGVLEEKEAAVARVDQLTRQAAAQA
DSY
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mRNA from alignment at H-canaliculatus_F_contig1289:2077..4744-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1289.2406.1 ID=mRNA_H-canaliculatus_F_contig1289.2406.1|Name=mRNA_H-canaliculatus_F_contig1289.2406.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2668bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1289:2077..4744- (Hapterophycus canaliculatus Oshoro5f female)
ACAACACTCTGTTTGACGAAGTGTACAACATGGAGCACGATATGGAGCAT
AGGGAGGATGACACGGAGCAAAGGATCCGTGAAATCGAGGCCCAACAGGA
CCAGCTGAAGTCTCAGGTACCGCACGCACACACCGCTCACACACCGTCGA
TCAAATTTTGATTTGCCGCCGGCGCTGCTGTTGCGGCTGTGGTGGACTCT
TGTCTCTTGCCAAGCTTGCTCACCTTGCTTGCGCGGGAGCGGACTAGGTT
ATAGCCTTGGCCTAGAACGGCCGTACCTCTTGAATCGGCGAGAAGGTTAT
CTACCTGCGTCGAACGTGACGAATTCGAATGTGCAATGGTCAGGACAGCA
GCTTTTCCTGTACTGTAAACGGTCTTGTGAAGATGACTGGGGAAATGTCA
ACGACATCGTCCATTTGAAAACTGCCCCTGCCTTTTACGCTGGTCGACCT
CGATTTGAATCGTAAATCCAAGTGCCTTGTAGTCGATTGAAGTGTCTGAC
GCTGCGTCCAAGGCCCGGCGTGCACGACAAAAGGGAAGAAATTTGCGAAA
ATATGGCGGAGTGGGGTGCCTTGCTTCCAGGCACCAGTTTGTTTCATTTC
AAGGAATCATCATGTGTTTCGTGAGTGTTGGACGCAGCCTCCGAAGGAGG
ATCACACACGAGAATTTGTAGTCCGCTCGAGAGTTCTACTGCCCCTGCAC
CGCTAACCGTACTCCTGTGATGTGGCGAGTTAGGCGGGCACGAGAGAGAC
ACCCCCTTCTTCGGGTATGCATCGCGATGGCTTGTCCTAATAGCTCGTAT
CATCCAACTGTTGTCGAGGTAACTTTTTTGGACGGCGTTCCCCCCCCTCA
TTCCGTCTCGTACGAGGACGAATCAACCGATCCGGGGAACAGGTGTGATC
GAAACCGAGTCAAAGCTTCTCCGCACCGCCACAACTATACCCCGTCGTGG
TATCGGTGAAGTACCCATCCGTCCAACCTCTTCTGCGACGCTGGCAGTCC
GCTTGTTTGCACCTTTGGAGGTTTTCGCACCTTAAGAGGCCCGCGTCGCC
TGTGGATTCCACCGGTAGTGCCGTATAGTCCGGTAAAGGCTTCCTATCGA
TGGGCCTGGGAGCTCCCGCCAGTGCTCAACTAGACTAGAAATACGGTACG
TACACGACTCCCGACCCCCCACCCCCCTGTTTCTTCTCGCTACCTGTCGG
CTGACACTTTCTCTCCCGCTCACGCGCACACCTTTTGGCGGAGACGCGTG
AGCCTACGACGCCATGTCTTTGATGGGATGCTACTGTAATACTCTATACG
ACTGTGCTGTAATCGTTTTTGTTTATCTTTCAACCTCCATGTGTCGCCGT
GTTTTGTTCGTCCACGCTGATTAAGTTCTCTGTTTTTGCTCGCTGATTTT
GTTCTCGGCGCTGGGTTCGTTCGGCTGGACCTTACTGCACGCAGCTGCAC
GAGAGGGATGGGAAGGTGAAGGAGCTCGAGGGAAGCAATCAGGAGATCCA
GACGCGCCTGGAGCAGACGCTTGCTGATCTCCAGAGGTTAGTGCCAACGG
TGAAGTACATACCGTAGACGACAGAAGATACCACACCCCCTGGACTGATT
TTCAAAGCTTGGTTACTCCGCGACCAGTATGATTCAAACACCAAATGACA
CGTTTTCTGGCAACTCTCCAAGAGATCTTTCCAACGTCGTACTTTTCGGG
ATCGGCGTCTCTTTTGCTGTGGACAACTTGAGGTTTGAAAACAGGTCCAG
GGGGTGCGGTATCCTCTGTCGTAGACGGTAATACTGCATACCTCGGATCG
GATCTCCTGCACTTTCCTATCTCAGGGTAGCCGACCATACTTGAGGGGAT
TCATGTGAAAGCGTATCCCAGCGGCGAACGCACAAGCTTGGCTTCTGAAA
CCTACCTCTGCACGATAGATTAATCTTTTATCCTTTACATATTTCCATCA
TTCCCATCGATCTAATCGATCTGACCGATCTGACCGTGTCGGCGTTCAAT
CCCTCGTGGTTGGAAGCCGGAGAGAATGAAGATCGGGGGGGCCGCAAAAA
CCCAGCATCCGTTGCCCTAGTTTCCAGCTATCGAGGTGTCAGCAAGGCAC
GGTGTGTTGCAACAAACCGGTGCAGTGGTCAGGAACGGTGCGGGATGGTA
CGGGATGGCACCGTGTGCTGGGACCTGGTGTGGTGCGGCAGCAACGTATC
CAGCGACGTATGTAGCGACATCGACGACGGCAACACCACCCCCGTCCGCC
CCCGGGTGAAGCAGCAAACATGCCTCCGAGCAACGTCTTTCTCTTGCACG
TGGAAGGGAGAGAAAGTTCGGGTGTATGGTGGTGCGGTGGATCACTAAGA
CCTCTCTGTCTTTCTCCCTGTACCCTGTACACGAGACTCAGCGGGTTTAT
GATGCGCTTCCCTCCGTTCGCAACACACCCCCGCGAGCACTAGGCGACAC
CCGCAACTTGGCACACCGTGCACGCGCATCATCGCCGGTGTTTTTTTACT
CCTTGTCATCCCTGTGGCTCCCATCGTCGTCCTTGCAGCGAGAGCGCTGC
CCGCAAGGCCGCAGAAGCCAAGGCCAAAGAGGGAGCCGGAGTTTTAGAGG
AGAAAGAGGCGGCGGTGGCGAGGGTGGACCAGCTCACCCGGCAGGCCGCG
GCCCAGGCAGACTCGTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1289:2077..4744-

>mRNA_H-canaliculatus_F_contig1289.2406.1 ID=mRNA_H-canaliculatus_F_contig1289.2406.1|Name=mRNA_H-canaliculatus_F_contig1289.2406.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1289:2077..4744- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGCACGATATGGAGCATAGGGAGGATGACACGGAGCAAAGGATCCG
TGAAATCGAGGCCCAACAGGACCAGCTGAAGTCTCAGATGGAGCACGATA
TGGAGCATAGGGAGGATGACACGGAGCAAAGGATCCGTGAAATCGAGGCC
CAACAGGACCAGCTGAAGTCTCAGCTGCACGAGAGGGATGGGAAGGTGAA
GGAGCTCGAGGGAAGCAATCAGGAGATCCAGACGCGCCTGGAGCAGACGC
TTGCTGATCTCCAGAGCTGCACGAGAGGGATGGGAAGGTGAAGGAGCTCG
AGGGAAGCAATCAGGAGATCCAGACGCGCCTGGAGCAGACGCTTGCTGAT
CTCCAGAGCGAGAGCGCTGCCCGCAAGGCCGCAGAAGCCAAGGCCAAAGA
GGGAGCCGGAGTTTTAGAGGAGAAAGAGGCGGCGGTGGCGAGGGTGGACC
AGCTCACCCGGCAGGCCGCGGCCCAGGCAGACTCGTACCGAGAGCGCTGC
CCGCAAGGCCGCAGAAGCCAAGGCCAAAGAGGGAGCCGGAGTTTTAGAGG
AGAAAGAGGCGGCGGTGGCGAGGGTGGACCAGCTCACCCGGCAGGCCGCG
GCCCAGGCAGACTCGTAC
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