mRNA_H-canaliculatus_F_contig12888.2405.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12888.2405.1
Unique NamemRNA_H-canaliculatus_F_contig12888.2405.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12888.2405.1 vs. uniprot
Match: A0A6H5KE00_9PHAE (YTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE00_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.500e-30
Identity = 82/121 (67.77%), Postives = 84/121 (69.42%), Query Frame = 1 
Query:  262 MNMYAPSFQQPYNQSGGVGYGAKGSQLPHGQLQQXXXXXXXASYMNAYGDGVGGDGQTQXXXXXXXXXXXXS------SGWIDGGLRDRSGGGFSGLSAEANGFVPSNFTPASGVAGGGEV 606
            MNMY  SFQQ YNQ G   Y +K SQLPHGQLQQ        SYMN YG   GGDG  Q     XXXXXXX        GWIDGGLR+R GGGFSGLSAEANGFVPSNFTPASGVAGGGEV
Sbjct:    1 MNMYGQSFQQSYNQGG---YPSKASQLPHGQLQQPPMN---TSYMNTYGSVAGGDGSAQTQQPRXXXXXXXXXXXXXXGGWIDGGLRERGGGGFSGLSAEANGFVPSNFTPASGVAGGGEV 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12888.2405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KE00_9PHAE3.500e-3067.77YTH domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12888contigH-canaliculatus_F_contig12888:100..2969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_000630.1
Exons4
Model size795
Cds size795
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12888.2405.1prot_H-canaliculatus_F_contig12888.2405.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12888 100..2969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929019.6001446-CDS-H-canaliculatus_F_contig12888:99..3691622929019.6001446-CDS-H-canaliculatus_F_contig12888:99..369Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12888 100..369 +
1696845649.677244-CDS-H-canaliculatus_F_contig12888:99..3691696845649.677244-CDS-H-canaliculatus_F_contig12888:99..369Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12888 100..369 +
1622929019.6179364-CDS-H-canaliculatus_F_contig12888:947..10971622929019.6179364-CDS-H-canaliculatus_F_contig12888:947..1097Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12888 948..1097 +
1696845649.691382-CDS-H-canaliculatus_F_contig12888:947..10971696845649.691382-CDS-H-canaliculatus_F_contig12888:947..1097Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12888 948..1097 +
1622929019.6358094-CDS-H-canaliculatus_F_contig12888:1899..21151622929019.6358094-CDS-H-canaliculatus_F_contig12888:1899..2115Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12888 1900..2115 +
1696845649.7024035-CDS-H-canaliculatus_F_contig12888:1899..21151696845649.7024035-CDS-H-canaliculatus_F_contig12888:1899..2115Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12888 1900..2115 +
1622929019.65071-CDS-H-canaliculatus_F_contig12888:2810..29691622929019.65071-CDS-H-canaliculatus_F_contig12888:2810..2969Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12888 2811..2969 +
1696845649.7132463-CDS-H-canaliculatus_F_contig12888:2810..29691696845649.7132463-CDS-H-canaliculatus_F_contig12888:2810..2969Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12888 2811..2969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12888.2405.1

>prot_H-canaliculatus_F_contig12888.2405.1 ID=prot_H-canaliculatus_F_contig12888.2405.1|Name=mRNA_H-canaliculatus_F_contig12888.2405.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=265bp
QFSDQSADQSVDQSQGSVTTQPFNNSERVGYSNGNGSPGAGGPGYGFAGG
GLQQGGMGFGVAGGQQLQQQGYGGVGGGAYGYPQFPGMNMYAPSFQQPYN
QSGGVGYGAKGSQLPHGQLQQQQQQQQNASYMNAYGDGVGGDGQTQQQQQ
RQSSGGGGSSGWIDGGLRDRSGGGFSGLSAEANGFVPSNFTPASGVAGGG
EVVGGGMSTSPQEQRSRGPDREGRRRRRRSSPRQPRFSRRERPLGPISSA
RRASVRPTRRRPRCR
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mRNA from alignment at H-canaliculatus_F_contig12888:100..2969+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12888.2405.1 ID=mRNA_H-canaliculatus_F_contig12888.2405.1|Name=mRNA_H-canaliculatus_F_contig12888.2405.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2870bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12888:100..2969+ (Hapterophycus canaliculatus Oshoro5f female)
CAGTTCTCGGACCAATCCGCCGACCAATCCGTGGACCAATCCCAGGGCTC
CGTCACGACCCAGCCTTTCAACAACAGCGAGAGAGTCGGGTACAGCAACG
GCAACGGCAGCCCCGGCGCGGGAGGGCCGGGGTACGGGTTCGCGGGTGGG
GGCCTGCAGCAGGGAGGGATGGGGTTCGGCGTGGCGGGGGGCCAGCAGCT
GCAGCAGCAAGGGTACGGCGGAGTGGGCGGCGGCGCGTACGGGTACCCCC
AGTTCCCCGGCATGAACATGGTGCGTTGGTTGTCATTTTTTTCCTGGGCG
GGATGGGCGGGGATGGGCGGGCGAAGGTCGAAGGGTTGGTGGGAGGTGTA
GAGTAGGCGGCGTGGACTCCAGGTGCCTCTTATTTGGGCACAGGAACAGT
TCCAGACGCTTTGGCCTGGTACCTTTCATTTTGGGGGATTCTCATCACTT
TGGAGGATCCAGCTCTGGTAGCTCGTGATCCCAGCATTTCGGCGATCCTA
CGTTCGCTTTCTCAATGGAGCCCTGTTTCCGTACCCCCCCCGCCCCTTCC
GGAAATCCCGCGGGAGCGTATACTGTAGTCGTTCCGCGGTGAACAGAAGC
CTCGCGGCTTCCAGGAGAAGAGCTGCAGTTGGTGGGGAGGATGGGGCATT
TAGACGGGGTTTGTATGTGAGGCGTGATGGCGTGCGTAAGGGGGACGGTG
ATAAGGGCGAAGCACGGTGGGAGAAACGGTTCTCCTACTTGTAAGGAAGC
TCAAGGTAACGCACGCTTTTTCCGCGTTTTTTTTTTTCTTAGATCCGTCT
TCTGCCCCCATTGCTGCCTCTCGTGCCTTTCCTGCCCCCTTTCTCCAGTA
CGCCCCTTCGTTCCAGCAGCCCTACAACCAGTCCGGCGGGGTCGGCTACG
GAGCCAAGGGCTCCCAGCTGCCGCACGGCCAGCTGCAGCAGCAGCAGCAG
CAGCAGCAAAACGCCTCCTACATGAATGCCTACGGGGATGGAGTCGGGGT
GAGTATCCGGTAGAGGACGGAACTAGGGCGCGGAAGCTCCCGGCGGCGGC
GGGTGCGGGGTGGGGTGAGCCTGGGGGTTGGTCGAAGCAACCACCTCAGA
AGCGGTTCGGTTCATGCCGGGCGATACCGCCGTCCTGGGAACAGTTCGTT
GGGGTGCGCGGCCGCGCGGCGGAGGGGCAGACCGACCGGTGTGCTGGAGT
CGTTTGTTTGACTCCACCGTTAGTTAGAAGCTCTTTCGCTTCTTTCGCTT
CTTCTACGACGGCCGGGAGCGGCGGCCGCTGGCTGTCTGGCTGGCTGTCT
GGCTGGCTGATTGGCAGCTTTTCGTGCAAATTTGAAGGACAGGGGTCTGT
AGCAATGGGGGGCTTCCTATTGATGTGAGGTGTCTCTGGGCAAGCACCAT
GAAAATATTCTTATTTTGTCTGGTGTACCTGTTGCATCCGGTCTTACCGC
GTGCGCGTGGGAACGATGGAGGAAGCCTTAGCGATGTCTCAAACACCCAC
GAGCGGTTGGCGGGGTGTGCGGTAAAGAAACGTAGCTGCCCCCTCGTGTG
GGCCCTGCCGACGAAAGCAGCGATTCGCGAGACGTCTACGTACGAGGAGT
TTCCATCTGCGGCCCCCCTTTGACGATCGCCGCCCGCAGCAAGTGCCCGG
CGTGGGGCTGAGGTCGTCAGGGGCTCCGCGAGCGTGTTTGAAGTTAGTTA
ATCCTCCGTCAAATAGTCGCGCCGCACGTCCTGAGCAACCGAACCGAGTC
TCCACTTTTGCTCTGGCGCACTGTACCACGCACGTTGACACACATCCCAG
GGAGATGGCCAGACCCAACAGCAGCAGCAGCGGCAGTCTAGCGGCGGCGG
CGGAAGCAGCGGCTGGATCGACGGGGGGCTTCGTGACCGCAGCGGCGGAG
GGTTCTCGGGCCTTTCCGCGGAGGCCAACGGCTTCGTGCCCTCCAACTTT
ACCCCCGCCAGCGGCGTCGCCGGCGGCGGGGAGGTGGTCGGCGGAGGGAT
GTCTACCTCTCCCCAGGTGTGTGTGAGTGCTTCTCCTCGCTGCCGCTGCT
CTCAGGGGATGGCGATGGGCATCCACGCACGCCCCTTCCAAAATACGGCT
CGCACGCCTTTAGGTCGAAGACCTGGAGCAGCACCCTTCCACCTAGAGGA
CGTCCACCCACAGGTCCACCCGCTCCGGCGGCGAGAGCAGTTTTTTTTCG
GAAGCCTTCTTCTGGATCACCCGCACGCGAGATCATCGTCCGGAGGAAAT
GGACGGGCTACGGCACGGCTCCGTTTTCGAAAGTCGCGCGTGCGCATGAG
ACGCGGATTACAACACAGCAGCCATCATGCGCGAGTCGGTTAGCAGGGAC
CGGGCAGAGCCCAGAGCCAAACAAACAGAGCACCTGCCGCCGCCGTGGCC
GCCCGGCTTCGGGTTTCGGTTTTGACCCAAGCATCTTTCCGCCCGCCCTC
CTCCTAAAAAACTGAAAAGTACGACGTGCGTGTGTGTGCGTGTGTGCGTG
TTTGCTTGTGTGATTTTTTCGGCGCCGTTTTTCCTCCTTCCTTTCTGCCC
TTCTCAGGGGGCGGCGGGAGGCCCCAGCAGCGCCTCGACCGCGGCGGCGG
CGGCGGCCGGCGGAGGCATCGGCGGGGGCGGGGCTGGGGTTGGCGGTGAC
ATGCCCGCCCTGCCCTCGTCTTCAGCTTCCACCGGGCCGGCGGCGGCGGC
GGCTCCGGCAGGAGCAGCGCAGCAGGGGTCCGGACAGGGAGGGTCGTCGT
CGTCGGCGGCGCAGCAGCCCCCGGCAGCCACGGTTCAGCAGAAGAGAGCG
ACCTCTTGGGCCGATATCGTCCGCCCGGAGGGCCTCCGTTCGTCCGACCA
GAAGGCGTCCGCGCTGCCGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12888:100..2969+

>mRNA_H-canaliculatus_F_contig12888.2405.1 ID=mRNA_H-canaliculatus_F_contig12888.2405.1|Name=mRNA_H-canaliculatus_F_contig12888.2405.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1590bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12888:100..2969+ (Hapterophycus canaliculatus Oshoro5f female)
CAGTTCTCGGACCAATCCGCCGACCAATCCGTGGACCAATCCCAGGGCTC
CGTCACGACCCAGCCTTTCAACAACAGCGAGAGAGTCGGGTACAGCAACG
GCAACGGCAGCCCCGGCGCGGGAGGGCCGGGGTACGGGTTCGCGGGTGGG
GGCCTGCAGCAGGGAGGGATGGGGTTCGGCGTGGCGGGGGGCCAGCAGCT
GCAGCAGCAAGGGTACGGCGGAGTGGGCGGCGGCGCGTACGGGTACCCCC
AGTTCCCCGGCATGAACATGCAGTTCTCGGACCAATCCGCCGACCAATCC
GTGGACCAATCCCAGGGCTCCGTCACGACCCAGCCTTTCAACAACAGCGA
GAGAGTCGGGTACAGCAACGGCAACGGCAGCCCCGGCGCGGGAGGGCCGG
GGTACGGGTTCGCGGGTGGGGGCCTGCAGCAGGGAGGGATGGGGTTCGGC
GTGGCGGGGGGCCAGCAGCTGCAGCAGCAAGGGTACGGCGGAGTGGGCGG
CGGCGCGTACGGGTACCCCCAGTTCCCCGGCATGAACATGTACGCCCCTT
CGTTCCAGCAGCCCTACAACCAGTCCGGCGGGGTCGGCTACGGAGCCAAG
GGCTCCCAGCTGCCGCACGGCCAGCTGCAGCAGCAGCAGCAGCAGCAGCA
AAACGCCTCCTACATGAATGCCTACGGGGATGGAGTCGGGTACGCCCCTT
CGTTCCAGCAGCCCTACAACCAGTCCGGCGGGGTCGGCTACGGAGCCAAG
GGCTCCCAGCTGCCGCACGGCCAGCTGCAGCAGCAGCAGCAGCAGCAGCA
AAACGCCTCCTACATGAATGCCTACGGGGATGGAGTCGGGGGAGATGGCC
AGACCCAACAGCAGCAGCAGCGGCAGTCTAGCGGCGGCGGCGGAAGCAGC
GGCTGGATCGACGGGGGGCTTCGTGACCGCAGCGGCGGAGGGTTCTCGGG
CCTTTCCGCGGAGGCCAACGGCTTCGTGCCCTCCAACTTTACCCCCGCCA
GCGGCGTCGCCGGCGGCGGGGAGGTGGTCGGCGGAGGGATGTCTACCTCT
CCCCAGGGAGATGGCCAGACCCAACAGCAGCAGCAGCGGCAGTCTAGCGG
CGGCGGCGGAAGCAGCGGCTGGATCGACGGGGGGCTTCGTGACCGCAGCG
GCGGAGGGTTCTCGGGCCTTTCCGCGGAGGCCAACGGCTTCGTGCCCTCC
AACTTTACCCCCGCCAGCGGCGTCGCCGGCGGCGGGGAGGTGGTCGGCGG
AGGGATGTCTACCTCTCCCCAGGAGCAGCGCAGCAGGGGTCCGGACAGGG
AGGGTCGTCGTCGTCGGCGGCGCAGCAGCCCCCGGCAGCCACGGTTCAGC
AGAAGAGAGCGACCTCTTGGGCCGATATCGTCCGCCCGGAGGGCCTCCGT
TCGTCCGACCAGAAGGCGTCCGCGCTGCCGAGAGCAGCGCAGCAGGGGTC
CGGACAGGGAGGGTCGTCGTCGTCGGCGGCGCAGCAGCCCCCGGCAGCCA
CGGTTCAGCAGAAGAGAGCGACCTCTTGGGCCGATATCGTCCGCCCGGAG
GGCCTCCGTTCGTCCGACCAGAAGGCGTCCGCGCTGCCGA
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