mRNA_H-canaliculatus_F_contig1288.2402.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1288.2402.1
Unique NamemRNA_H-canaliculatus_F_contig1288.2402.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1288.2402.1 vs. uniprot
Match: D8LHF0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF0_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 9.220e-77
Identity = 123/200 (61.50%), Postives = 146/200 (73.00%), Query Frame = 1
Query:   22 TFPSQAAMGEPVRLALAQSGVEWEDNRINSDDWPALKPTTPYGQLPIMEIDGAVIPQSYAQLRYVGKIGGLYPKDPIPAAFCDAAAEAVLDIHGPMRDSIFERDQEKKMEMRKNL----------------------YFAGGQLSIADIAIVARLNWLKTGVLEGIPPTIVDGSPLLSSLVERVMAEPRIVAYMESRPKK 555
            T+   AA+GEP+RLALAQSGVEW DNR+ S+ WP LKPT PY Q+P++E+DGAVIPQS A LRYVGKIG LYP DPI AAF D+A +AV DI G MR  IFE+D +KK ++RK+L                      YFAG +LSI DIA+VARLNWL  G  EG+P T++D SPL+SSLV+RVMAEPRIVAYME RPKK
Sbjct:    7 TYFEFAALGEPLRLALAQSGVEWIDNRVPSEQWPTLKPTLPYQQMPVLEVDGAVIPQSLAILRYVGKIGNLYPTDPIQAAFADSATDAVSDIQGYMRGIIFEKDADKKAQLRKDLVETLLPTWLANLEKALKLAGGEYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLDESPLVSSLVQRVMAEPRIVAYMEERPKK 206          
BLAST of mRNA_H-canaliculatus_F_contig1288.2402.1 vs. uniprot
Match: D8LK37_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK37_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 1.340e-68
Identity = 114/201 (56.72%), Postives = 141/201 (70.15%), Query Frame = 1
Query:   22 TFPSQAAMGEPVRLALAQSGVEWEDNRINSDDWPALKPTTPYGQLPIMEIDGAVIPQSYAQLRYVGKIGGLYPKDPIPAAFCDAAAEAVLDIHGPMRDSIFERDQEKKMEMRKNL----------------------YFAGGQLSIADIAIVARLNWLKTGVL-EGIPPTIVDGSPLLSSLVERVMAEPRIVAYMESRPKK 555
            T+   AA+GE +RLALAQSGVEW DNR+  ++WP LKPT PY Q+P++E+DGAVIPQ++A LRYVGK+G LYP DPI AAF D+A +AV D+HG MR   FE+D + K ++ K+L                      YFAG +LSI DIA+VARLNWL  G   E +P  I++  PLLSSLV+RVMAEPRIVAYME RPKK
Sbjct:    7 TYFDIAALGEQLRLALAQSGVEWIDNRVTFEEWPTLKPTLPYQQMPVLEVDGAVIPQTFAILRYVGKMGDLYPTDPIQAAFADSATDAVNDMHGHMRAIFFEKDADAKTQLLKDLVEKLLPPWLANLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFDESVPSAILEEFPLLSSLVQRVMAEPRIVAYMEERPKK 207          
BLAST of mRNA_H-canaliculatus_F_contig1288.2402.1 vs. uniprot
Match: B1N8E6_9PHAE (Glutathione S-transferase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E6_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 4.160e-64
Identity = 105/192 (54.69%), Postives = 136/192 (70.83%), Query Frame = 1
Query:   40 AMGEPVRLALAQSGVEWEDNRINSDDWPALKPTTPYGQLPIMEIDGAVIPQSYAQLRYVGKIGGLYPKDPIPAAFCDAAAEAVLDIHGPMRDSIFERDQEKKMEMRKNL----------------------YFAGGQLSIADIAIVARLNWLKTGVLEGIPPTIVDGSPLLSSLVERVMAEPRIVAYMESRP 549
            A+GEP+RLALA SG  WED R++ +++ A+KP+ PY QLP +E+ G +IPQS AQ+RY+GKIGGLY +DPI AAF DAA EAV+D+H  +R ++ E+D  KK+EMRK +                      YFAGG+LSI DI +VARLNWLK G L+GIP TIVD  PLLS+LV+ VM+E +IV Y+ES P
Sbjct:   14 ALGEPLRLALAMSGQAWEDKRVSKEEFMAIKPSLPYNQLPTLEVGGTLIPQSLAQMRYIGKIGGLYSEDPIEAAFADAAMEAVIDMHFHLRPTVHEQDPAKKLEMRKAMTDNYLPTWLGNLERALKAAGGSYFAGGKLSIGDIYVVARLNWLKRGALDGIPDTIVDDFPLLSALVQSVMSEEKIVKYLESGP 205          
BLAST of mRNA_H-canaliculatus_F_contig1288.2402.1 vs. uniprot
Match: B1N8E7_9PHAE (Glutathione S-transferase 2 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E7_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.340e-55
Identity = 99/197 (50.25%), Postives = 130/197 (65.99%), Query Frame = 1
Query:   22 TFPSQAAMGEPVRLALAQSGVEWEDNRINSDDWPALKPTTPYGQLPIMEIDGAVIPQSYAQLRYVGKIGGLYPKDPIPAAFCDAAAEAVLDIHGPMRDSIFERDQEKKMEMRKNL----------------------YFAGGQLSIADIAIVARLNWLKTGVLEGIPPTIVDGSPLLSSLVERVMAEPRIVAYMESR 546
            T+   A   EPVR+ALA +G  WED R++  ++PALKP  P GQLPI+E+ G V+PQS AQLRYVGK+ GLYP+D + AA  DAA ++V D H  +  ++ ++D+ ++MEMR+NL                      YFAGG+LSI DIA+VARL WLK G L+GIP +IVD  PLLS+L+ERV AEP I  Y + R
Sbjct:   10 TYFDFAGPAEPVRMALAMTGQPWEDKRVSFSEFPALKPGLPNGQLPILEVGGKVLPQSGAQLRYVGKLAGLYPEDALEAALADAAVDSVGDNHMKLAPTVQQKDKVQQMEMRQNLVRDFLPTWLGNLEKALANAGGTYFAGGKLSIGDIAVVARLVWLKEGSLDGIPTSIVDEYPLLSALIERVNAEPNIAKYHQER 206          
BLAST of mRNA_H-canaliculatus_F_contig1288.2402.1 vs. uniprot
Match: A0A6H5JAZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ7_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.030e-51
Identity = 90/156 (57.69%), Postives = 110/156 (70.51%), Query Frame = 1
Query:  154 LPIMEIDGAVIPQSYAQLRYVGKIGGLYPKDPIPAAFCDAAAEAVLDIHGPMRDSIFERDQEKKMEMRKNL----------------------YFAGGQLSIADIAIVARLNWLKTGVLEGIPPTIVDGSPLLSSLVERVMAEPRIVAYMESRPKK 555
            +P++E+DGAVIPQS A LRYVGK+G LYP DPI AAF D+A +AV DIHG MR  IFE+D + K ++RK+L                      YFAG +LSI DIA+VARLNWL  G  EG+P T+++  PLLSSLV+R+MAEPRIVAYME RPKK
Sbjct:    1 MPVLEVDGAVIPQSVAILRYVGKMGNLYPNDPIQAAFADSAVDAVSDIHGYMRGIIFEKDADAKAQLRKDLVETLLPPWLTNSEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRIMAEPRIVAYMEGRPKK 156          
BLAST of mRNA_H-canaliculatus_F_contig1288.2402.1 vs. uniprot
Match: A0A6H5KRV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV2_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.160e-41
Identity = 78/194 (40.21%), Postives = 116/194 (59.79%), Query Frame = 1
Query:   34 QAAMGEPVRLALAQSGVEWEDNRINSDDWPALKPTTPYGQLPIMEIDGAVIPQSYAQLRYVGKIGGLYPKDPIPAAFCDAAAEAVLDIHGPMRDSIFERDQEKKMEMRKNLY---------------------FAGGQLSIADIAIVARLNWLKTGVLEGIPPTIVDGSPLLSSLVERVMAEPRIVAYMESRPK 552
            +A   EP+R AL +  +EWED R+  +++ ALKP+ P GQ+P++ IDG  + QS A LRYVGK+GGL P D + AA CDA  + V D+H  +R S  E+D+ KKMEMR +L                      F   ++++ADI I  RL+ ++ GVL+GIP TI D  P L ++ + V++EP++ A++    K
Sbjct:   12 KAGAAEPIRWALEKGSLEWEDKRLTREEFGALKPSLPNGQVPVLSIDGFELAQSMAILRYVGKLGGLNPSDDLAAAKCDAIMDCVTDLHINIRPSFMEKDEAKKMEMRADLAANFIPKWLSNMEKQLSSTDGTFFFDKMTVADIMIACRLHPMRNGVLDGIPTTIADSYPSLCAMCDAVVSEPKVAAFLAKHAK 205          
BLAST of mRNA_H-canaliculatus_F_contig1288.2402.1 vs. uniprot
Match: A0A061SAH2_9CHLO (Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SAH2_9CHLO)

HSP 1 Score: 139 bits (350), Expect = 3.480e-36
Identity = 72/193 (37.31%), Postives = 110/193 (56.99%), Query Frame = 1
Query:   43 MGEPVRLALAQSGVEWEDNRINSDDWPALKPTTPYGQLPIMEIDGAVIPQSYAQLRYVGKIGGLYPKDPIPAAFCDAAAEAVLDIHGPMRDSIFERDQEKKMEMRKNL-----------------------YFAGGQLSIADIAIVARLNWLKTGVLEGIPPTIVDGSPLLSSLVERVMAEPRIVAYMESRPK 552
            + EP+RLA A  G+++ED+R   +DWP LKP TPYG +P + I   V  QS A LRY GK+ GLYP DP+ A   D   +A+ D+   ++ ++ E+D++KKMEMRK L                       Y  G  L+IAD+ +   +  L +G+L+GIP TI +  P +++L+E+V A+ ++ A+     K
Sbjct:   13 VAEPIRLAFAVGGIDFEDHRFQREDWPQLKPKTPYGSVPTLTIGDRVYAQSNAILRYAGKLAGLYPTDPVEALAVDQIVDALEDMFLHVKPTVQEQDEKKKMEMRKVLAEETLPKWLGYFNKHIEENGSSGYIVGDSLTIADLKLYTLIGLLTSGMLDGIPKTIAEPFPKVTALLEKVGADEKVKAFEAKHAK 205          
BLAST of mRNA_H-canaliculatus_F_contig1288.2402.1 vs. uniprot
Match: A0A7S1XAS3_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1XAS3_9CHLO)

HSP 1 Score: 137 bits (344), Expect = 2.750e-35
Identity = 78/197 (39.59%), Postives = 110/197 (55.84%), Query Frame = 1
Query:   25 FPSQAAMGEPVRLALAQSGVEWEDNRINSDDWPALKPTTPYGQLPIMEID-GAVIPQSYAQLRYVGKIGGLYPKDPIPAAF-CDAAAEAVLDIHGPMRDSIFERDQEKKMEMRKNL----------------------YFAGGQLSIADIAIVARLNWLKTGVLEGIPPTIVDGSPLLSSLVERVMAEPRIVAYMES 543
            FP +  + EP+RLAL   GV++EDNR+    WP LK +TP+G LP + +D G  + QS A LRY GK+GGLYPKD   AA   D    A  D+ G +R ++FE+D EKKM MRK L                      +  G  +++AD+ +   L+ LK+G+L+GIPPTI +    L  L + V    ++ AY E+
Sbjct:    6 FPIKG-VAEPIRLALVAGGVDFEDNRLEQGTWPDLKASTPFGALPTLHLDSGEQLAQSDALLRYAGKLGGLYPKDDDVAAMRVDMWLGAADDVQGAIRPTLFEKDDEKKMAMRKVLADETFPKWLSIFDSQLESNGSGFLVGTSMTVADLKLFCILDNLKSGILDGIPPTITEPYAKLQKLYDTVAKHEKVAAYRET 201          
BLAST of mRNA_H-canaliculatus_F_contig1288.2402.1 vs. uniprot
Match: D7FPV3_ECTSI (Glutathione S-transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV3_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 4.490e-34
Identity = 71/193 (36.79%), Postives = 106/193 (54.92%), Query Frame = 1
Query:   49 EPVRLALAQSGVEWEDNRINSDDWPALKPTTPYGQLPIMEIDGAVIPQSYAQLRYVGKIGGLYPKDPIPAAFCDAAAEAVLDIHGPMRDSIFERDQEKKMEMRKNL----------------------YFAGGQLSIADIAIVARLNWLKTGVLEGIPPTIVDGSPLLSSLVERVMAEPRIVAYMESRPKK*T 561
            E +RLA    G+ ++D R++  ++  +K   P+ QLPI+ +D  V PQS A LRY GKIGGLYP DPI AA  DA  + + DI   +R SI+E + ++K+ MRK L                      +F G +++I D+ I  R+ WL+ GVL GIP TI+     + +  E V + P++  Y ++ P K T
Sbjct:   16 EAIRLAFYVGGIPFKDRRVSRQEFAKIKRDLPFAQLPILTVDDEVFPQSAAILRYAGKIGGLYPSDPIAAAKVDAVIDCMFDIQAAIRPSIYETNAQRKLSMRKELSEVTLPLWLQYLERWLERAGTTFFVGEEITICDLVIYTRMKWLRRGVLVGIPDTILRNFRRVRAHSEAVASHPKVDDYYKNGPGKVT 208          
BLAST of mRNA_H-canaliculatus_F_contig1288.2402.1 vs. uniprot
Match: A0A534ZXF1_9DELT (Glutathione S-transferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534ZXF1_9DELT)

HSP 1 Score: 131 bits (329), Expect = 4.670e-33
Identity = 74/193 (38.34%), Postives = 106/193 (54.92%), Query Frame = 1
Query:   25 FPSQAAMGEPVRLALAQSGVEWEDNRINSDDWPALKPTTPYGQLPIMEIDGAVIPQSYAQLRYVGKIGGLYPKDPIPAAFCDAAAEAVLDIHGPMRDSIFERDQEKKMEMRKNL----------------------YFAGGQLSIADIAIVARLNWLKTGVLEGIPPTIVDG-SPLLSSLVERVMAEPRIVAY 534
            F      GEP RLAL+ +G+ +ED+R+   DWP  KP+TP+G LP++E+DGA++ QS    RYVGK+  LYP DP  AA CD A EAV DI   +  + F   +++K   R+ L                      YFAGG+LS+AD+ +   +  L++G L+ IP  + D  +  L +  ERV   P + AY
Sbjct:    9 FDFHGGRGEPARLALSIAGIPFEDDRVPGPDWPRRKPSTPFGSLPVLEVDGAIVTQSNGINRYVGKLADLYPSDPWQAALCDEAMEAVEDITSEV-SATFSLPEDQKKAQRQALADGPITFFLTRLQQRLEAGGGQYFAGGRLSVADLKVFVWIRHLRSGKLDYIPADLPDRVAAKLVAHFERVKNHPGMKAY 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1288.2402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHF0_ECTSI9.220e-7761.50Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D8LK37_ECTSI1.340e-6856.72Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
B1N8E6_9PHAE4.160e-6454.69Glutathione S-transferase 1 n=1 Tax=Laminaria digi... [more]
B1N8E7_9PHAE1.340e-5550.25Glutathione S-transferase 2 n=1 Tax=Laminaria digi... [more]
A0A6H5JAZ7_9PHAE2.030e-5157.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRV2_9PHAE1.160e-4140.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A061SAH2_9CHLO3.480e-3637.31Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis s... [more]
A0A7S1XAS3_9CHLO2.750e-3539.59Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
D7FPV3_ECTSI4.490e-3436.79Glutathione S-transferase n=2 Tax=Ectocarpus TaxID... [more]
A0A534ZXF1_9DELT4.670e-3338.34Glutathione S-transferase n=1 Tax=Deltaproteobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1288contigH-canaliculatus_F_contig1288:14878..18343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score132.5
Seed ortholog evalue1.9e-28
Seed eggNOG ortholog946362.XP_004994854.1
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K04097
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko01100,ko05204,map00480,map00590,map00980,map00982,map01100,map05204
EggNOG free text desc.Glutathione S-transferase, C-terminal domain
EggNOG OGs3A52M@33154,KOG1695@1,KOG1695@2759
EC2.5.1.18,5.3.99.2
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size1040
Cds size516
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929019.30067-UTR-H-canaliculatus_F_contig1288:14877..153591622929019.30067-UTR-H-canaliculatus_F_contig1288:14877..15359Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1288 14878..15359 -
1696845649.5372803-UTR-H-canaliculatus_F_contig1288:14877..153591696845649.5372803-UTR-H-canaliculatus_F_contig1288:14877..15359Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1288 14878..15359 -
1622929019.4199762-UTR-H-canaliculatus_F_contig1288:18301..183431622929019.4199762-UTR-H-canaliculatus_F_contig1288:18301..18343Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1288 18302..18343 -
1696845649.6118903-UTR-H-canaliculatus_F_contig1288:18301..183431696845649.6118903-UTR-H-canaliculatus_F_contig1288:18301..18343Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1288 18302..18343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929019.3410816-CDS-H-canaliculatus_F_contig1288:15359..155331622929019.3410816-CDS-H-canaliculatus_F_contig1288:15359..15533Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1288 15360..15533 -
1696845649.5579093-CDS-H-canaliculatus_F_contig1288:15359..155331696845649.5579093-CDS-H-canaliculatus_F_contig1288:15359..15533Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1288 15360..15533 -
1622929019.359136-CDS-H-canaliculatus_F_contig1288:15930..159481622929019.359136-CDS-H-canaliculatus_F_contig1288:15930..15948Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1288 15931..15948 -
1696845649.5664842-CDS-H-canaliculatus_F_contig1288:15930..159481696845649.5664842-CDS-H-canaliculatus_F_contig1288:15930..15948Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1288 15931..15948 -
1622929019.3753464-CDS-H-canaliculatus_F_contig1288:16179..162001622929019.3753464-CDS-H-canaliculatus_F_contig1288:16179..16200Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1288 16180..16200 -
1696845649.5747325-CDS-H-canaliculatus_F_contig1288:16179..162001696845649.5747325-CDS-H-canaliculatus_F_contig1288:16179..16200Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1288 16180..16200 -
1622929019.390891-CDS-H-canaliculatus_F_contig1288:17050..172591622929019.390891-CDS-H-canaliculatus_F_contig1288:17050..17259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1288 17051..17259 -
1696845649.5890214-CDS-H-canaliculatus_F_contig1288:17050..172591696845649.5890214-CDS-H-canaliculatus_F_contig1288:17050..17259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1288 17051..17259 -
1622929019.4055896-CDS-H-canaliculatus_F_contig1288:18207..183011622929019.4055896-CDS-H-canaliculatus_F_contig1288:18207..18301Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1288 18208..18301 -
1696845649.5980961-CDS-H-canaliculatus_F_contig1288:18207..183011696845649.5980961-CDS-H-canaliculatus_F_contig1288:18207..18301Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1288 18208..18301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1288.2402.1prot_H-canaliculatus_F_contig1288.2402.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1288 15360..18301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1288.2402.1

>prot_H-canaliculatus_F_contig1288.2402.1 ID=prot_H-canaliculatus_F_contig1288.2402.1|Name=mRNA_H-canaliculatus_F_contig1288.2402.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=172bp
MGEPVRLALAQSGVEWEDNRINSDDWPALKPTTPYGQLPIMEIDGAVIPQ
SYAQLRYVGKIGGLYPKDPIPAAFCDAAAEAVLDIHGPMRDSIFERDQEK
KMEMRKNLYFAGGQLSIADIAIVARLNWLKTGVLEGIPPTIVDGSPLLSS
LVERVMAEPRIVAYMESRPKK*
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mRNA from alignment at H-canaliculatus_F_contig1288:14878..18343-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1288.2402.1 ID=mRNA_H-canaliculatus_F_contig1288.2402.1|Name=mRNA_H-canaliculatus_F_contig1288.2402.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3466bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1288:14878..18343- (Hapterophycus canaliculatus Oshoro5f female)
ACTGAAGTTCTTATCGGTCCAACCTTTCCCTCACAGGCTGCAATGGGAGA GCCTGTCAGATTGGCGCTAGCGCAGAGTGGCGTCGAATGGGAAGACAACA GGATCAACAGCGACGACTGGCCGGCGCTAAAGCCAAGTGCGTAAGAAATT CATGTTTCAAATAATCCGCGAGTCATCATGTAAACGTCTGGATCATGAAT GTTTGACCCTGGGTCGGAGGCAAACAGTGTAGCTTGATCGGTACACCGTT CGCTAACATGATCCTGCTTATGGACATACATTTTAGCTAATACACTTGGT TATGCACAATATGGCGGACTGTGTCACCTCTTCGTTTCTGTGAACCGAAA AGGTTTCCCCGGTAATTGCGGTGTCGTGTTATCAAAATGCGTCGTCATCG TCGTGCTGAACCTTCTAGTTTGGAGCTCTCTCCGGAATGATCCGCAGCTT TTTTTGCTACCCATCTTGTGTCCAAGTACCGTGTCTCCGGTAGCGTTATA TTTTCCCTTAATACATGCGAAACCCGAATGGTGATTACCAAGTTTCCAGG GCTTGTCTGTCAGTTGCCTTTATGGGGGCGTGGATGGACCTCTCACCACA TCAGATTCTTCATTCGTCCTTCCCAAATGCACAGAAATGTGGTTGTTAAG TCGACGCGGTGTCTCAACATGAACATTCCTACCGTATGAAAGACGACAAC GATAAGAGCCCCGACATCGATGTCAGATTTCACGTGTCACTATTTTTCAA TGTATCACGTGTATCAAGCCTCCTCTGATGAACATTGGTGTCAATACTCA CCAGGTAGCTGTTTCGGCCAGGAATTGAGCTGGATTGCGTCACTATTTCG CAATGTATCACGTGTTTCAAGCCGTCTCTGATTCAAACTGGTGTCAATGT TTACCAGGTAACTGTTTCGGCCAGGAGTAAAGCTGGATTGCGTCTTTTCT CTGATCCATTTTCCTTGTTCTTCTCGCCAAATCGATGAATCGTACCAGAA ACGAAGTGCACATATGTATCATTGGAGCTCTTTCTCTGTATCGCGGCATC GCCCTGACGTGACAAGTCGTGCTGTCTCCTCCAGCTACACCATACGGGCA GCTTCCGATCATGGAGATTGACGGGGCGGTCATCCCGCAAAGCTACGCCC AGCTCCGCTACGTCGGAAAGATCGGGGGCTTGTACCCCAAGGACCCCATC CCAGCGGCTTTCTGCGATGCCGCGGCGGAGGCCGTGTTGGACATCCATGG TCCCATGCGAGACTCAATTTTTGAAAGGGACCAGGAAAAGAAGGCGAGGC AATGATAGTTCAGAACTCGATGCTCGGTAGGGCTTTACGATGGAGAATTT CGGGGTTGGTTTAAGTTGAAATGCAAGAGGTTGCGCCGAAAACATTCCAC AGTGTGTGTGTGTGAAATAGCCAAGCTCAAGCAGAAGAAATCTCACATGA TGGGGCGATCTGCGAGAAAGAGTGGTTAATCTTCCACAATATCGAGACGA CCACGAGACCAGCGTCCACATCTGATATGAATGTGACCCAGTCGAAATAC TTCGAACCATATGTAATAGATGTCGCGATTCGAACTTCCGCCTTGATTGC ACACGTTTCCTTTTAGTCTACATCTTGAGTTGTTATTTTCAAGCGGAAGT TCTGAATTGTTATTTTCAAGCGGAAGTTCTGAAAAACGGTGGGGGTCGAG GTGATGGCTACTTCTTATGAATCTCTTTGGGCTATCTGATGCGGTGCTTC TACACGAGGTGCAACATGAAACAATGAAACCCCGTTGACGATGAGATACC CCGGTCCACTCGTTCCCGCGCCATCACCGCGGTCGCTCTACGATTAGTCT TCGCGGTTTGTTCGCGTGTATCTCCCCTACTTTAGATGTTGGTTCGTTGT CGTGTTTGCGCTAGCTATGCTGTGCTTGCAGCACGCAGCCTGGTCCGGTT TGGGCTCTGCGATCGTCGGAGAGCAACGTTGTTCACGCAATGCGTCTCTC GTGTCTCCTTTGATGGCCGATGCTTCGGTAAGTACCGACCGTCGGGATCC TCAGCGAGCGCTGACGTCATCCTCTCCTGCCTCTTTCTGTCTTTGGGTCT GTCCATATACTTGCTCGTGCGGTGCGTGTTGTACTCGTTCCAGATGGAAA TGCGCAAGAACCTGGCGGAGAACGTGATTCCGCTGTGAGTGCCTCCTCCT GGTACAACACTGCTCGGCACCAAAAGAGTAGATACTGCGCCGATCCTCTT TTACGAATGAAGATCCATTTCGGCTGTGCCTTCGGAATGACATCCCTTAT CCCGTCTCTCCTCCCCGTCCCTCACTCGTACCCTTGAACCTATGCGCAGC TGGTTGGCCAACGTCGAGAAGGTTCTCGACTCGGCTGGCGGTCAGTACTT CGCCGGCGGCCAGGCGAGTCAGTCTCAGCTCATGTTCCTCCCTTCGCTGA TTTGCGCACCTTGTGGGGTTGAAGTGCCGGCCGCAGAAGTCGTCGCGCAT CTCCAGCACTGCTATACTGCTGCCATTAGGCATGAATTCAGTCGACTCAG TTATTCTTTGTGGGTCTTCCGCGGTGTAAACGCAACCCACTCAACCGACG AACATGGCCATTTCGCCCTTCCCAGACTTTTTCTCGAGCCCCGACGTGCA AGGTAGGGCAAGGTTCTTCCCTGGCTCGGGGCCAATAGGCGTGTTCCACT GTTTTGGGAGTTGTCTGACCTGCACTTTGAGAAAACGAAACACCGTTACG CCTCCCTGAAAGGAAGACGCTTATCCCTGAAACACGTCTACCGGCTCTTG CTTTCTGCAGCTCTCCATCGCCGACATCGCGATTGTCGCCCGCTTGAACT GGCTCAAAACCGGCGTCCTCGAGGGCATCCCCCCGACTATCGTCGACGGC TCGCCCCTCTTGTCGTCCCTGGTGGAGAGGGTTATGGCTGAGCCTAGGAT CGTGGCGTACATGGAGTCCAGGCCCAAGAAGTAGACTGAGAACAATGAGG ATTTGCGCATGCTACGCGATGGGTGCATGTCTTTGTGTTCATCTTGATGT GTTCTTCACGTCATAATGGTACGGAGCTGTAAACGATCGCGAGTGGGGGT AGTCCGCGGGGTAGCAAATGGGCGTGTTTCGTGTGATTGTCGGGTGGGAG TAGCGTAGTCTTGTTTTACCGGAATTGAAAGGCATAGACCATGTCGGCGT CGCCGCATCCAGGGCAAAGAGTCGTTTGACTGGACCGAGTTGTAAACGCA CCATCGTCTCTGTTCAGAGAGGGTATCTAGAAAGTAGAATTGTCAGGTTT ATGCGCCGGCATACATTAGCTTGCGGTGAAATATATATGGCCTGGTGAGC AGCACTTGGTTTGGCCTCTTACCTGATGGCCTCCTCAATGGACATAGTGC GAGCATGTAGTGGACTCTCTCAGCACAACGGTAGACAAGCTTTGAACCAA CAACGCTGCTACCACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1288:14878..18343-

>mRNA_H-canaliculatus_F_contig1288.2402.1 ID=mRNA_H-canaliculatus_F_contig1288.2402.1|Name=mRNA_H-canaliculatus_F_contig1288.2402.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1032bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1288:14878..18343- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGAGCCTGTCAGATTGGCGCTAGCGCAGAGTGGCGTCGAATGGGA
AGACAACAGGATCAACAGCGACGACTGGCCGGCGCTAAAGCCAAATGGGA
GAGCCTGTCAGATTGGCGCTAGCGCAGAGTGGCGTCGAATGGGAAGACAA
CAGGATCAACAGCGACGACTGGCCGGCGCTAAAGCCAACTACACCATACG
GGCAGCTTCCGATCATGGAGATTGACGGGGCGGTCATCCCGCAAAGCTAC
GCCCAGCTCCGCTACGTCGGAAAGATCGGGGGCTTGTACCCCAAGGACCC
CATCCCAGCGGCTTTCTGCGATGCCGCGGCGGAGGCCGTGTTGGACATCC
ATGGTCCCATGCGAGACTCAATTTTTGAAAGGGACCAGGAAAAGAAGCTA
CACCATACGGGCAGCTTCCGATCATGGAGATTGACGGGGCGGTCATCCCG
CAAAGCTACGCCCAGCTCCGCTACGTCGGAAAGATCGGGGGCTTGTACCC
CAAGGACCCCATCCCAGCGGCTTTCTGCGATGCCGCGGCGGAGGCCGTGT
TGGACATCCATGGTCCCATGCGAGACTCAATTTTTGAAAGGGACCAGGAA
AAGAAGATGGAAATGCGCAAGAACCTGATGGAAATGCGCAAGAACCTGTA
CTTCGCCGGCGGCCAGTACTTCGCCGGCGGCCAGCTCTCCATCGCCGACA
TCGCGATTGTCGCCCGCTTGAACTGGCTCAAAACCGGCGTCCTCGAGGGC
ATCCCCCCGACTATCGTCGACGGCTCGCCCCTCTTGTCGTCCCTGGTGGA
GAGGGTTATGGCTGAGCCTAGGATCGTGGCGTACATGGAGTCCAGGCCCA
AGAAGTAGCTCTCCATCGCCGACATCGCGATTGTCGCCCGCTTGAACTGG
CTCAAAACCGGCGTCCTCGAGGGCATCCCCCCGACTATCGTCGACGGCTC
GCCCCTCTTGTCGTCCCTGGTGGAGAGGGTTATGGCTGAGCCTAGGATCG
TGGCGTACATGGAGTCCAGGCCCAAGAAGTAG
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