mRNA_H-canaliculatus_F_contig12879.2400.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12879.2400.1
Unique NamemRNA_H-canaliculatus_F_contig12879.2400.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12879.2400.1 vs. uniprot
Match: D7G0C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C8_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 7.330e-43
Identity = 83/102 (81.37%), Postives = 89/102 (87.25%), Query Frame = 1 
Query:    1 LFRRKIGAGHFTEALMADALHGRAAALQGLFGSLVGITDALVSSGAPSTRTFGASMYRGIFSEFAEAYHRQEVVGALITHCGSGAEIETDSALSALSALASP 306
            LFRRKI  GHFTE LM DALHGRA AL GLF SL+GITDALVSSG  S R +GASMYR IFS F+EAYHRQEVVGALITHCG+G+E+ETDSALSALSALASP
Sbjct:  322 LFRRKISCGHFTEPLMTDALHGRAGALHGLFFSLMGITDALVSSGVVSVRRYGASMYREIFSGFSEAYHRQEVVGALITHCGAGSELETDSALSALSALASP 423
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BLAST of mRNA_H-canaliculatus_F_contig12879.2400.1 vs. uniprot
Match: A0A835YSY6_9STRA (Fanconi anaemia protein FancD2 nuclease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSY6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.720e-16
Identity = 49/110 (44.55%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:    4 FRRKIGAGHFTEALMADALH-----------GRAAALQGLFGSLVGITDALVSSGAPSTRTFGASMYRGIFSEFAEAYHRQEVVGALITHCGSGAEIETDSALSALSALA 300
            F++K  AG F E L+ADA             GRAAAL GLF S++ + D L  SG P     G ++Y  +F EF +A  RQ+VVGAL+ + GSGA  E + AL+ L+ALA
Sbjct:  170 FQKKASAGQFAEPLLADAXXXXXXXXXXXXXGRAAALGGLFDSMLQLADHLARSGDPLAERCGGALYTLLFREFTDAARRQDVVGALLVNAGSGAASEVNCALATLTALA 279
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BLAST of mRNA_H-canaliculatus_F_contig12879.2400.1 vs. uniprot
Match: A0A7M7MYJ9_STRPU (Uncharacterized protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7MYJ9_STRPU)

HSP 1 Score: 80.5 bits (197), Expect = 1.820e-15
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:    1 LFRRKIGAGHFTEALMADALHGRAAALQGLFGSLVGITDALVSSGAPSTRTFGASMYRGIFSEFAEAYHRQEVVGALITHCGSGAEIETDSALSALSALAS 303
            +FR K+  GHFTE L+       A  ++   GSL+ I + L+ S  P    FG+ +Y+  F+ F + Y +QEVVGAL+TH GSG   E DSAL  LS+LAS
Sbjct:  405 VFRHKVRKGHFTEELLQATFTSHAKVIRDYLGSLLCIAEKLLRSPEPQVSQFGSKVYQTAFAAF-DVYSKQEVVGALVTHIGSGLSAEMDSALDILSSLAS 504
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BLAST of mRNA_H-canaliculatus_F_contig12879.2400.1 vs. uniprot
Match: A0A6J0PH71_ELAGV (Fanconi anemia group D2 protein homolog n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6J0PH71_ELAGV)

HSP 1 Score: 79.0 bits (193), Expect = 6.330e-15
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:    1 LFRRKIGAGHFTEALMADALHGRAAALQGLFGSLVGITDALVSSGAPSTRTFGASMYRGIFSEFAEAYHRQEVVGALITHCGSGAEIETDSALSALSALAS 303
            +F++KI  G F EAL    +HG    ++G F S + +++ L+       R FG  +Y  +F EF + Y RQEV+GAL+TH GSG   E  SAL  +  L S
Sbjct:  445 IFKKKIVEGIFREALFDQCIHGHRELVKGYFSSFLSVSEYLLGCKEQQARDFGIHLYTSLFEEFTDTYSRQEVLGALVTHIGSGVGYEVSSALETMILLTS 545
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BLAST of mRNA_H-canaliculatus_F_contig12879.2400.1 vs. uniprot
Match: L8GJ52_ACACA (Fanconi anemia complementation group D2 family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GJ52_ACACA)

HSP 1 Score: 76.3 bits (186), Expect = 5.540e-14
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   22 AGHFTEALMADALHGRAAALQGLFGSLVGITDALVSSGAPSTRTFGASMYRGIFSEFAEAYHRQEVVGALITHCGSGAEIETDSALSALSALA 300
            AGHFT  L+  A+ G    L+G F SL+G+ D L+ +  P+ R  G  +Y   F  F + YHRQEV+GAL+ H GSG+  E D  L     LA
Sbjct:  346 AGHFTPELVTHAVAGHGHTLRGCFPSLLGLADYLLRASEPAIRRHGGLLYVLAFRHFPDTYHRQEVLGALVAHIGSGSPHEVDGTLDVFERLA 438
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BLAST of mRNA_H-canaliculatus_F_contig12879.2400.1 vs. uniprot
Match: A0A8B8ZF26_PHODC (Fanconi anemia group D2 protein homolog n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B8ZF26_PHODC)

HSP 1 Score: 75.9 bits (185), Expect = 7.630e-14
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:    1 LFRRKIGAGHFTEALMADALHGRAAALQGLFGSLVGITDALVSSGAPSTRTFGASMYRGIFSEFAEAYHRQEVVGALITHCGSGAEIETDSALSALSALAS 303
            +F++KI    F EAL    +HG    ++  F S + +T+ L++      R FG  +Y  +F EF + Y RQEV+GAL+TH GSG   E  SAL  +  L S
Sbjct:  412 IFKKKIVDAVFREALFGQCIHGHRELVKDYFSSFLSVTEYLLACKEQQARDFGIYLYTSLFEEFTDTYSRQEVLGALVTHIGSGVGYEVSSALETMILLTS 512
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BLAST of mRNA_H-canaliculatus_F_contig12879.2400.1 vs. uniprot
Match: A0A2R6PKT2_ACTCC (Fanconi anemia group D2 protein n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6PKT2_ACTCC)

HSP 1 Score: 75.5 bits (184), Expect = 1.040e-13
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:    1 LFRRKIGAGHFTEALMADALHGRAAALQGLFGSLVGITDALVSSGAPSTRTFGASMYRGIFSEFAEAYHRQEVVGALITHCGSGAEIETDSALSALSALAS 303
            + ++KI  G   + +    +HG    +Q  F S + ++++L++      R FG  +YR +F EF + Y RQEV+GAL+TH GSG   E  SAL AL  LAS
Sbjct:  393 IIKKKIVEGCIQDVMFDQCIHGNKELVQNHFPSFLSLSESLLACKDRKLRAFGIHIYRSLFEEFVDTYSRQEVLGALVTHVGSGISFEVSSALEALVLLAS 493
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BLAST of mRNA_H-canaliculatus_F_contig12879.2400.1 vs. uniprot
Match: UPI0009E2B930 (Fanconi anemia group D2 protein homolog isoform X1 n=6 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E2B930)

HSP 1 Score: 74.7 bits (182), Expect = 1.940e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:    1 LFRRKIGAGHFTEALMADALHGRAAALQGLFGSLVGITDALVSSGAPSTRTFGASMYRGIFSEFAEAYHRQEVVGALITHCGSGAEIETDSALSALSALAS 303
            +F++KI  G F EAL    + G+   ++  F S V + + L+S      R FG  +Y  +F EF + Y RQEV+GAL+TH GSG   E  SAL  L  L+S
Sbjct:  426 IFKKKIVNGCFCEALFDQCITGQRELVKDHFASFVSLCEYLLSCKEKQVRNFGIHLYTSLFEEFKDTYSRQEVLGALVTHIGSGIAYEVSSALETLIVLSS 526
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BLAST of mRNA_H-canaliculatus_F_contig12879.2400.1 vs. uniprot
Match: A0A835DS51_9MAGN (CULLIN_2 domain-containing protein n=2 Tax=Magnoliopsida TaxID=3398 RepID=A0A835DS51_9MAGN)

HSP 1 Score: 74.3 bits (181), Expect = 2.660e-13
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:    1 LFRRKIGAGHFTEALMADALHGRAAALQGLFGSLVGITDALVSSGAPSTRTFGASMYRGIFSEFAEAYHRQEVVGALITHCGSGAEIETDSALSALSALAS 303
            +F++KI  G F EA+    +HG    ++    S + +++ L++      R FG  +Y  +F EF + Y RQEV+GAL+TH GSG   E +SAL  +  LAS
Sbjct:  716 IFKKKILEGCFQEAMFDQCIHGNRELVRDYLPSFISVSEYLLACKEQKPREFGIHIYTSLFEEFIDTYSRQEVLGALVTHIGSGISYEVNSALETMVLLAS 816
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BLAST of mRNA_H-canaliculatus_F_contig12879.2400.1 vs. uniprot
Match: A0A2I0A5R1_9ASPA (Uncharacterized protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0A5R1_9ASPA)

HSP 1 Score: 73.9 bits (180), Expect = 3.620e-13
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:    1 LFRRKIGAGHFTEALMADALHGRAAALQGLFGSLVGITDALVSSGAPSTRTFGASMYRGIFSEFAEAYHRQEVVGALITHCGSGAEIETDSALSALSALAS 303
            L +RKI +G  +EAL    + G    ++  F S V I++ L+SS     R FG  +Y  +F EF + Y RQEV+G L+TH GSG   E  SAL  L  L S
Sbjct:  423 LLKRKIISGCLSEALFDQCISGHRELVKDYFPSFVSISEYLLSSKEKEARNFGIHLYVALFQEFKDTYSRQEVLGVLVTHIGSGIAYEVSSALETLIILTS 523
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12879.2400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0C8_ECTSI7.330e-4381.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YSY6_9STRA9.720e-1644.55Fanconi anaemia protein FancD2 nuclease-domain-con... [more]
A0A7M7MYJ9_STRPU1.820e-1544.55Uncharacterized protein n=2 Tax=Echinacea TaxID=76... [more]
A0A6J0PH71_ELAGV6.330e-1539.60Fanconi anemia group D2 protein homolog n=1 Tax=El... [more]
L8GJ52_ACACA5.540e-1443.01Fanconi anemia complementation group D2 family pro... [more]
A0A8B8ZF26_PHODC7.630e-1438.61Fanconi anemia group D2 protein homolog n=1 Tax=Ph... [more]
A0A2R6PKT2_ACTCC1.040e-1338.61Fanconi anemia group D2 protein n=1 Tax=Actinidia ... [more]
UPI0009E2B9301.940e-1340.59Fanconi anemia group D2 protein homolog isoform X1... [more]
A0A835DS51_9MAGN2.660e-1337.62CULLIN_2 domain-containing protein n=2 Tax=Magnoli... [more]
A0A2I0A5R1_9ASPA3.620e-1341.58Uncharacterized protein n=1 Tax=Apostasia shenzhen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12879contigH-canaliculatus_F_contig12879:1432..2324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue3e-37
Seed eggNOG ortholog2880.D7G0C8
Preferred nameFANCD2
KEGG koko:K10891
KEGG Pathwayko03460,map03460
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000280,GO:0000793,GO:0002682,GO:0002694,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007127,GO:0007129,GO:0007275,GO:0007276,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009887,GO:0009889,GO:0009966,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016604,GO:0019219,GO:0019222,GO:0019827,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0023051,GO:0031323,GO:0031326,GO:0031347,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0033554,GO:0034599,GO:0034641,GO:0036297,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0045132,GO:0045143,GO:0045580,GO:0045589,GO:0045595,GO:0045619,GO:0045786,GO:0045930,GO:0046483,GO:0048285,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048731,GO:0048854,GO:0048856,GO:0050727,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051052,GO:0051090,GO:0051171,GO:0051239,GO:0051249,GO:0051252,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060322,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0070182,GO:0070192,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:0097150,GO:0098727,GO:0098813,GO:0140013,GO:1901360,GO:1902105,GO:1903046,GO:1903047,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000348,GO:2001141
EggNOG free text desc.DNA polymerase binding
EggNOG OGsKOG4712@1,KOG4712@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929019.087896-CDS-H-canaliculatus_F_contig12879:1431..15541622929019.087896-CDS-H-canaliculatus_F_contig12879:1431..1554Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12879 1432..1554 +
1696845649.4359179-CDS-H-canaliculatus_F_contig12879:1431..15541696845649.4359179-CDS-H-canaliculatus_F_contig12879:1431..1554Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12879 1432..1554 +
1622929019.1024241-CDS-H-canaliculatus_F_contig12879:2135..23241622929019.1024241-CDS-H-canaliculatus_F_contig12879:2135..2324Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12879 2136..2324 +
1696845649.4472759-CDS-H-canaliculatus_F_contig12879:2135..23241696845649.4472759-CDS-H-canaliculatus_F_contig12879:2135..2324Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12879 2136..2324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12879.2400.1prot_H-canaliculatus_F_contig12879.2400.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12879 1432..2324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12879.2400.1

>prot_H-canaliculatus_F_contig12879.2400.1 ID=prot_H-canaliculatus_F_contig12879.2400.1|Name=mRNA_H-canaliculatus_F_contig12879.2400.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
LFRRKIGAGHFTEALMADALHGRAAALQGLFGSLVGITDALVSSGAPSTR
TFGASMYRGIFSEFAEAYHRQEVVGALITHCGSGAEIETDSALSALSALA
SPR*
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mRNA from alignment at H-canaliculatus_F_contig12879:1432..2324+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12879.2400.1 ID=mRNA_H-canaliculatus_F_contig12879.2400.1|Name=mRNA_H-canaliculatus_F_contig12879.2400.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=893bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12879:1432..2324+ (Hapterophycus canaliculatus Oshoro5f female)
CTCTTTCGCCGCAAGATTGGCGCCGGGCACTTCACGGAGGCACTCATGGC
GGATGCCCTCCACGGCAGAGCGGCGGCGCTGCAGGGGCTGTTCGGCAGTC
TGGTCGGCATCACGGACGCCCTGGTGAGGCCTCCTGTCACCGTCGCGGTT
GTGGTTGTTGTCGTGGTCGTCGCTGCCTCAACCCGGACCGTTCTGGCCCG
GCCACAACACTCCGTCACATCCATCCGCCTTACACGACTCCCCCGTTTCT
TTGGTCCGCGTCCGGTTGGATCGTGCCTCAGTCCTCGTCCCTCGCCGCCG
TCCGTCGCGTCCCTCCCTTACGTCGTGTCATGATGAAACTGTGGCCAATA
AGTTCGCCACAAGACAACACCATGCACATGGCACCTTGCGCACCCACTCG
CCTTCCTGTGTTGCTGCCGCCCGTATGATAGCATCGTGCTTCCGTTGCTA
CCCGCAACGCACTTGCCGCGCGAGCTCGGGGTCTCCGTCGGTGGGGAACT
TGTTGCGGGGACGATCGGTCAAGTCTCCCTCGGAATTTCCTCGGAGCGAT
CCCTGGAGCGCCCAAGCGCAAGACTTTCCCTGCCAGCGTTCGTTTTGTAT
CATGGTGATGGTGTGCCATCTCACCCCCGCCCCCTTCCCAAAGGAAAGCC
TTCCTACGGATGGTCTAAATTGCTCGCTGATACTGATACTTGTAACCGGG
TAAGGTGAGCTCGGGAGCTCCGTCGACGAGAACTTTCGGGGCCAGCATGT
ACCGCGGAATATTCTCGGAATTTGCCGAGGCGTATCACCGCCAGGAGGTC
GTGGGGGCCCTCATCACGCACTGCGGCTCCGGTGCGGAGATCGAGACGGA
CAGTGCCCTGTCGGCGCTGTCCGCCCTTGCTTCCCCGAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12879:1432..2324+

>mRNA_H-canaliculatus_F_contig12879.2400.1 ID=mRNA_H-canaliculatus_F_contig12879.2400.1|Name=mRNA_H-canaliculatus_F_contig12879.2400.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12879:1432..2324+ (Hapterophycus canaliculatus Oshoro5f female)
CTCTTTCGCCGCAAGATTGGCGCCGGGCACTTCACGGAGGCACTCATGGC
GGATGCCCTCCACGGCAGAGCGGCGGCGCTGCAGGGGCTGTTCGGCAGTC
TGGTCGGCATCACGGACGCCCTGCTCTTTCGCCGCAAGATTGGCGCCGGG
CACTTCACGGAGGCACTCATGGCGGATGCCCTCCACGGCAGAGCGGCGGC
GCTGCAGGGGCTGTTCGGCAGTCTGGTCGGCATCACGGACGCCCTGGTGA
GCTCGGGAGCTCCGTCGACGAGAACTTTCGGGGCCAGCATGTACCGCGGA
ATATTCTCGGAATTTGCCGAGGCGTATCACCGCCAGGAGGTCGTGGGGGC
CCTCATCACGCACTGCGGCTCCGGTGCGGAGATCGAGACGGACAGTGCCC
TGTCGGCGCTGTCCGCCCTTGCTTCCCCGAGGTGAGTGAGCTCGGGAGCT
CCGTCGACGAGAACTTTCGGGGCCAGCATGTACCGCGGAATATTCTCGGA
ATTTGCCGAGGCGTATCACCGCCAGGAGGTCGTGGGGGCCCTCATCACGC
ACTGCGGCTCCGGTGCGGAGATCGAGACGGACAGTGCCCTGTCGGCGCTG
TCCGCCCTTGCTTCCCCGAGGTGA
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