mRNA_H-canaliculatus_F_contig12879.2399.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12879.2399.1
Unique NamemRNA_H-canaliculatus_F_contig12879.2399.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12879.2399.1 vs. uniprot
Match: D7G0C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C8_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 3.640e-29
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:   13 PSDSETSGDALTLEALRQGLRLRSDLAACFLKAIAKTSGSEGHSVVDMWALFCLHANQDTRKKV 204
            PSDS+TSGDALTLEALRQGLRLR DLAACFLKAI KT+GSEGHSVVD+W LFCL+ANQDTRK+V
Sbjct:  256 PSDSDTSGDALTLEALRQGLRLRGDLAACFLKAITKTAGSEGHSVVDLWVLFCLYANQDTRKRV 319
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BLAST of mRNA_H-canaliculatus_F_contig12879.2399.1 vs. uniprot
Match: A0A0L0DRD2_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DRD2_THETB)

HSP 1 Score: 51.6 bits (122), Expect = 9.600e-6
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 PPAAPSDSETS-GDALTLEALRQGLRLRSDLAACFLKAIAKTSGSEGHSVVDMWALFCLHANQDTRKKV 204
            P A+ + SET+ G+ALTLEAL+ G+R R  +A  FLK I  T  +  H  +D+W LF + A+ D+R+K 
Sbjct:  496 PGASAAASETAVGEALTLEALKAGIRFRPAIARGFLKDITATPLAHMHRGIDLWILFVI-ASLDSRRKA 563
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BLAST of mRNA_H-canaliculatus_F_contig12879.2399.1 vs. uniprot
Match: A0A7S2KA45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KA45_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.770e-5
Identity = 27/62 (43.55%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:   19 DSETSGDALTLEALRQGLRLRSDLAACFLKAIAKTSGSEGHSVVDMWALFCLHANQDTRKKV 204
            D   + +ALTLEAL QG++ RSD     L AI K++  E HS  D+W L C +     R KV
Sbjct:   27 DESRNAEALTLEALSQGMQYRSDFTDSLLSAIQKSAFFE-HSPSDVWLLMCCNHASHNRSKV 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12879.2399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0C8_ECTSI3.640e-2987.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0L0DRD2_THETB9.600e-644.93Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7S2KA45_9STRA4.770e-543.55Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12879contigH-canaliculatus_F_contig12879:88..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue7.5e-25
Seed eggNOG ortholog2880.D7G0C8
Preferred nameFANCD2
KEGG koko:K10891
KEGG Pathwayko03460,map03460
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000280,GO:0000793,GO:0002682,GO:0002694,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007127,GO:0007129,GO:0007275,GO:0007276,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009887,GO:0009889,GO:0009966,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016604,GO:0019219,GO:0019222,GO:0019827,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0023051,GO:0031323,GO:0031326,GO:0031347,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0033554,GO:0034599,GO:0034641,GO:0036297,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0045132,GO:0045143,GO:0045580,GO:0045589,GO:0045595,GO:0045619,GO:0045786,GO:0045930,GO:0046483,GO:0048285,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048731,GO:0048854,GO:0048856,GO:0050727,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051052,GO:0051090,GO:0051171,GO:0051239,GO:0051249,GO:0051252,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060322,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0070182,GO:0070192,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:0097150,GO:0098727,GO:0098813,GO:0140013,GO:1901360,GO:1902105,GO:1903046,GO:1903047,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000348,GO:2001141
EggNOG free text desc.DNA polymerase binding
EggNOG OGsKOG4712@1,KOG4712@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929019.0369418-CDS-H-canaliculatus_F_contig12879:87..3211622929019.0369418-CDS-H-canaliculatus_F_contig12879:87..321Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12879 88..321 +
1696845649.4191618-CDS-H-canaliculatus_F_contig12879:87..3211696845649.4191618-CDS-H-canaliculatus_F_contig12879:87..321Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12879 88..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12879.2399.1prot_H-canaliculatus_F_contig12879.2399.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12879 88..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12879.2399.1

>prot_H-canaliculatus_F_contig12879.2399.1 ID=prot_H-canaliculatus_F_contig12879.2399.1|Name=mRNA_H-canaliculatus_F_contig12879.2399.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=78bp
PPAAPSDSETSGDALTLEALRQGLRLRSDLAACFLKAIAKTSGSEGHSVV
DMWALFCLHANQDTRKKVGGSGGAGRG*
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mRNA from alignment at H-canaliculatus_F_contig12879:88..321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12879.2399.1 ID=mRNA_H-canaliculatus_F_contig12879.2399.1|Name=mRNA_H-canaliculatus_F_contig12879.2399.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=234bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12879:88..321+ (Hapterophycus canaliculatus Oshoro5f female)
CCCCCAGCAGCTCCTTCGGACTCGGAGACGTCGGGCGACGCCCTTACGCT
GGAGGCGCTGCGGCAAGGACTCCGCCTGAGGAGCGATCTCGCCGCCTGCT
TCCTCAAGGCCATCGCCAAGACGTCCGGCTCCGAGGGGCACAGCGTGGTG
GACATGTGGGCCCTGTTTTGTCTACACGCGAATCAGGACACGCGCAAGAA
GGTAGGGGGTTCGGGGGGTGCGGGGCGGGGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12879:88..321+

>mRNA_H-canaliculatus_F_contig12879.2399.1 ID=mRNA_H-canaliculatus_F_contig12879.2399.1|Name=mRNA_H-canaliculatus_F_contig12879.2399.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=468bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12879:88..321+ (Hapterophycus canaliculatus Oshoro5f female)
CCCCCAGCAGCTCCTTCGGACTCGGAGACGTCGGGCGACGCCCTTACGCT
GGAGGCGCTGCGGCAAGGACTCCGCCTGAGGAGCGATCTCGCCGCCTGCT
TCCTCAAGGCCATCGCCAAGACGTCCGGCTCCGAGGGGCACAGCGTGGTG
GACATGTGGGCCCTGTTTTGTCTACACGCGAATCAGGACACGCGCAAGAA
GGTAGGGGGTTCGGGGGGTGCGGGGCGGGGGTGACCCCCAGCAGCTCCTT
CGGACTCGGAGACGTCGGGCGACGCCCTTACGCTGGAGGCGCTGCGGCAA
GGACTCCGCCTGAGGAGCGATCTCGCCGCCTGCTTCCTCAAGGCCATCGC
CAAGACGTCCGGCTCCGAGGGGCACAGCGTGGTGGACATGTGGGCCCTGT
TTTGTCTACACGCGAATCAGGACACGCGCAAGAAGGTAGGGGGTTCGGGG
GGTGCGGGGCGGGGGTGA
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