mRNA_H-canaliculatus_F_contig12873.2396.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12873.2396.1
Unique NamemRNA_H-canaliculatus_F_contig12873.2396.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12873.2396.1 vs. uniprot
Match: A0A6H5JPI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPI7_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.490e-34
Identity = 76/105 (72.38%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    1 SKGSMLLRRMGWKEGEGLGRRSDGALQPVQVERRGERAGLGTTQNSNNPFAIGADGRVSRWEQMRRRFSETQSSGPGGFREAARRASGASGGVRWLKGKAEGGGG 315
            SKGSMLLRRMGWKEG+GLGRRSDG L+PV  ERRGERAGLGT ++S++PFA+GADGR+S+WEQMRRRFSE   S   GF EA RRAS A  G RWLKG   G GG
Sbjct:  830 SKGSMLLRRMGWKEGQGLGRRSDGPLRPV--ERRGERAGLGT-RSSSSPFAVGADGRISKWEQMRRRFSEAAQSSGSGFGEAGRRASSAGXGGRWLKGGEXGRGG 931          
BLAST of mRNA_H-canaliculatus_F_contig12873.2396.1 vs. uniprot
Match: D8LLZ9_ECTSI (Ankyrin repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ9_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 4.080e-8
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query:    1 SKGSMLLRRMGWKEGEGLGRRSDGALQPVQVERRGERAGL 120
            SKGSMLLRRMGWK+G+GLGRRSDG L+PVQ   + E AGL
Sbjct:  826 SKGSMLLRRMGWKQGQGLGRRSDGPLRPVQARIKLEPAGL 865          
BLAST of mRNA_H-canaliculatus_F_contig12873.2396.1 vs. uniprot
Match: A0A1V9Y0E5_9ACAR (Uncharacterized protein n=3 Tax=Dermanyssoidea TaxID=41438 RepID=A0A1V9Y0E5_9ACAR)

HSP 1 Score: 59.3 bits (142), Expect = 7.350e-8
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 SKGSMLLRRMGWKEGEGLGRRSDGALQPVQVERRGERAGLGTTQNSNNPFAIGADGRVSRWEQMRRRFSE 210
            +KG  +L+ MGW+EGEGLGR + G  QPV V+ R ERAGLG    + +      D R  RW++ R R+ +
Sbjct:  541 NKGFKMLQGMGWREGEGLGRSNQGGTQPVSVQMRNERAGLGREDATTHSD----DNRGERWKRARARYDQ 606          
BLAST of mRNA_H-canaliculatus_F_contig12873.2396.1 vs. uniprot
Match: A0A1L8I202_XENLA (angiogenic factor with G patch and FHA domains 1 isoform X1 n=2 Tax=Xenopus laevis TaxID=8355 RepID=A0A1L8I202_XENLA)

HSP 1 Score: 57.8 bits (138), Expect = 2.580e-7
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 1
Query:    1 SKGSMLLRRMGWKEGEGLGRRSDGALQPVQVERRGERAGLGTTQNSNNPFAIGADGRVSR----WEQMRRRFSETQSSGPGGFREAARRASGASGGVRWLKGKAE 303
            +KG  +L +MGWK+GEGLG+ SDG   P+Q++ R ++AGLG    S NP +I  +   ++    WE+ R R++E        F +A  +    S  V W+KG A+
Sbjct:  596 NKGRKMLEKMGWKKGEGLGKTSDGIRDPIQLQLRKKKAGLG----SQNPTSIEDNQPPTQNQKNWEKARERYAEA-------FPDAKTKNETKSS-VTWIKGSAQ 688          
BLAST of mRNA_H-canaliculatus_F_contig12873.2396.1 vs. uniprot
Match: A0A1Z5KW17_ORNMO (G-patch domain-containing protein (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5KW17_ORNMO)

HSP 1 Score: 54.3 bits (129), Expect = 3.220e-7
Identity = 26/68 (38.24%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 SKGSMLLRRMGWKEGEGLGRRSDGALQPVQVERRGERAGLGTTQNSNNPFAIGADGRVSRWEQMRRRF 204
            +KG  +L+++GWKEGEGLG++  G+ +PV VE+R   AGLG   +S+       D ++  W++ ++R+
Sbjct:   32 NKGFQMLQKLGWKEGEGLGKQQQGSTEPVLVEQRRTHAGLGAEDSSS------LDPKLQVWKKTKKRY 93          
BLAST of mRNA_H-canaliculatus_F_contig12873.2396.1 vs. uniprot
Match: A0A1L8HRJ7_XENLA (angiogenic factor with G patch and FHA domains 1 isoform X1 n=2 Tax=Xenopus laevis TaxID=8355 RepID=A0A1L8HRJ7_XENLA)

HSP 1 Score: 57.4 bits (137), Expect = 3.520e-7
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 SKGSMLLRRMGWKEGEGLGRRSDGALQPVQVERRGERAGLGTTQNSNNPFAI----GADGRVSRWEQMRRRFSE 210
            +KG  +L +MGWK+G+GLG+ SDG   P+Q++ R ++AGLG    S NP +I            WE+ R RF+E
Sbjct:  604 NKGRKMLEKMGWKKGDGLGKTSDGIRDPIQLQLRKKKAGLG----SQNPTSIEDIQSTTQNQKNWEKARERFAE 673          
BLAST of mRNA_H-canaliculatus_F_contig12873.2396.1 vs. uniprot
Match: Q07FY9_XENTR (Angiogenic factor with G patch and FHA domains 1 (Fragment) n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=Q07FY9_XENTR)

HSP 1 Score: 56.2 bits (134), Expect = 4.010e-7
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 1
Query:    1 SKGSMLLRRMGWKEGEGLGRRSDGALQPVQVERRGERAGLG------------TTQNSNNPFAIGADGRVSRWEQMRRRFSE 210
            +KG  +L +MGWK+GEGLG+ SDG   P+Q++ R ++AGLG            TTQN  N            WE+ R R++E
Sbjct:  114 NKGRKMLEKMGWKKGEGLGKSSDGIRDPIQLQLRKKKAGLGAQNPTSIEDIQPTTQNKKN------------WEKARERYAE 183          
BLAST of mRNA_H-canaliculatus_F_contig12873.2396.1 vs. uniprot
Match: A0A6I8PU18_XENTR (Angiogenic factor with G-patch and FHA domains 1 n=4 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A6I8PU18_XENTR)

HSP 1 Score: 56.2 bits (134), Expect = 8.950e-7
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 1
Query:    1 SKGSMLLRRMGWKEGEGLGRRSDGALQPVQVERRGERAGLG------------TTQNSNNPFAIGADGRVSRWEQMRRRFSE 210
            +KG  +L +MGWK+GEGLG+ SDG   P+Q++ R ++AGLG            TTQN  N            WE+ R R++E
Sbjct:  617 NKGRKMLEKMGWKKGEGLGKSSDGIRDPIQLQLRKKKAGLGAQNPTSIEDIQPTTQNKKN------------WEKARERYAE 686          
BLAST of mRNA_H-canaliculatus_F_contig12873.2396.1 vs. uniprot
Match: A0A2A6CBH7_PRIPA (G-patch domain-containing protein n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A2A6CBH7_PRIPA)

HSP 1 Score: 56.2 bits (134), Expect = 8.980e-7
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    7 GSMLLRRMGWKEGEGLGRRSDGALQPVQVERRGERAGLGTTQNSNNPFAIGADGRVSRWEQMRRRFSETQSS 222
            G  LL+ MGWKEGEGLGR+++G ++PV  E +G+R GLG    +    AI        W+  R RF E + S
Sbjct:  662 GFKLLKSMGWKEGEGLGRKNEGIVEPVANEFKGDRTGLGAAAVAPTKNAI--------WDLARSRFKEIEES 725          
BLAST of mRNA_H-canaliculatus_F_contig12873.2396.1 vs. uniprot
Match: A0A6P4XV13_BRABE (angiogenic factor with G patch and FHA domains 1-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XV13_BRABE)

HSP 1 Score: 56.2 bits (134), Expect = 9.060e-7
Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 1
Query:    1 SKGSMLLRRMGWKEGEGLGRRSDGALQPVQVERRGERAGLGTTQNSNNPFAIGADGRVSRWEQMRRRFSETQSSG--PGGFREAARRASGASGGVRWLKGK 297
            +KG  +L +MGWKEG+GLG+ S G  +PVQV  R  ++GLG +   +        G+   W + R RF   + +G  PG  R   +R+S       W+KG+
Sbjct:  662 NKGRKMLEKMGWKEGKGLGKTSQGRQEPVQVSLRESQSGLGASAPRDVESVGLKTGKGKNWRKARERFYAMEQAGQPPGPSRTMNQRSS-------WVKGE 755          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12873.2396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPI7_9PHAE1.490e-3472.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLZ9_ECTSI4.080e-875.00Ankyrin repeat-containing protein n=1 Tax=Ectocarp... [more]
A0A1V9Y0E5_9ACAR7.350e-844.29Uncharacterized protein n=3 Tax=Dermanyssoidea Tax... [more]
A0A1L8I202_XENLA2.580e-737.14angiogenic factor with G patch and FHA domains 1 i... [more]
A0A1Z5KW17_ORNMO3.220e-738.24G-patch domain-containing protein (Fragment) n=1 T... [more]
A0A1L8HRJ7_XENLA3.520e-741.89angiogenic factor with G patch and FHA domains 1 i... [more]
Q07FY9_XENTR4.010e-739.02Angiogenic factor with G patch and FHA domains 1 (... [more]
A0A6I8PU18_XENTR8.950e-739.02Angiogenic factor with G-patch and FHA domains 1 n... [more]
A0A2A6CBH7_PRIPA8.980e-743.06G-patch domain-containing protein n=2 Tax=Pristion... [more]
A0A6P4XV13_BRABE9.060e-735.64angiogenic factor with G patch and FHA domains 1-l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12873contigH-canaliculatus_F_contig12873:2308..3363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12873.2396.1prot_H-canaliculatus_F_contig12873.2396.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12873 2320..3348 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929018.4207587-UTR-H-canaliculatus_F_contig12873:2307..23191622929018.4207587-UTR-H-canaliculatus_F_contig12873:2307..2319Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12873 2308..2319 +
1696845649.2845376-UTR-H-canaliculatus_F_contig12873:2307..23191696845649.2845376-UTR-H-canaliculatus_F_contig12873:2307..2319Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12873 2308..2319 +
1622929018.4655073-UTR-H-canaliculatus_F_contig12873:3348..33631622929018.4655073-UTR-H-canaliculatus_F_contig12873:3348..3363Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12873 3349..3363 +
1696845649.3141494-UTR-H-canaliculatus_F_contig12873:3348..33631696845649.3141494-UTR-H-canaliculatus_F_contig12873:3348..3363Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12873 3349..3363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929018.4367907-CDS-H-canaliculatus_F_contig12873:2319..23971622929018.4367907-CDS-H-canaliculatus_F_contig12873:2319..2397Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12873 2320..2397 +
1696845649.293784-CDS-H-canaliculatus_F_contig12873:2319..23971696845649.293784-CDS-H-canaliculatus_F_contig12873:2319..2397Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12873 2320..2397 +
1622929018.4493532-CDS-H-canaliculatus_F_contig12873:3102..33481622929018.4493532-CDS-H-canaliculatus_F_contig12873:3102..3348Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12873 3103..3348 +
1696845649.3036673-CDS-H-canaliculatus_F_contig12873:3102..33481696845649.3036673-CDS-H-canaliculatus_F_contig12873:3102..3348Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12873 3103..3348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12873.2396.1

>prot_H-canaliculatus_F_contig12873.2396.1 ID=prot_H-canaliculatus_F_contig12873.2396.1|Name=mRNA_H-canaliculatus_F_contig12873.2396.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
MLLRRMGWKEGEGLGRRSDGALQPVQVERRGERAGLGTTQNSNNPFAIGA
DGRVSRWEQMRRRFSETQSSGPGGFREAARRASGASGGVRWLKGKAEGGG
GEDGSQA*
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mRNA from alignment at H-canaliculatus_F_contig12873:2308..3363+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12873.2396.1 ID=mRNA_H-canaliculatus_F_contig12873.2396.1|Name=mRNA_H-canaliculatus_F_contig12873.2396.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1056bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12873:2308..3363+ (Hapterophycus canaliculatus Oshoro5f female)
TCGAAGGGCAGCATGCTCTTGAGAAGGATGGGGTGGAAGGAAGGGGAGGG CTTGGGCCGCCGGTCGGACGGCGCTCTCCAACCGGTGCAGGTGATATGAC GGCGGAAAGACAAACAGACAGACGAGAGCGTCGGCGTGGATTCGGGTTGG GTGGCATTTGTATCCGCAGAATGCAAGAGAGGCTGATTCCTGGAACGGGG TTTCCCGTTCCTGATCCGGCTGTGACAGGTGCAGGTGTCAGGGGCGGGTT ATCGCGGTGAGGGACCGGGATGCTTTCGTTCGAGCGAATCGGCCGGATCC CCCTCAAGGGGGGAAATACGCGTGGGGCTCTGCCATCTCTTGCCTTCCTT ACCCCCCCTCTTCCAGCTACGCGACGGAGGCAGGATCAGAGCCTACGGCG GCGACCCCGCCCACAGAAGTACGCCTTTGCAGCCTGTCACTCACGCACGA GGCAACGTAGCGGGTTCGTTGACGACGACGACGACGACGAGGCCGCCTCG TACCTGCGCATATCGCGAGACGCAGGCCACGCCTCTCGACTGCTCCTCGA CGGGCCCACCCGCCTTTTCGTCCCTGGATCACGCGACAGATACAAACCTC GCCCCCCTCCCTGCCTGCCTGGTCGACCGCGAGCCGCCCCGTGCTTCCTG CGCAACTTTTCCTGGCTGCGGACAGAAGAAGCGGGTTAAAGGACAGCTCC CGCCACCCTTGGGACCATCCACCTCCCACGGCCCCCACACTCCTTTTTTT TTTTGCGTTATCAGCCCCCACTCCCGACTCACGCGTGTTCCGCAGGTGGA AAGGAGGGGAGAACGGGCGGGGCTCGGGACGACGCAAAACTCCAACAACC CGTTCGCGATTGGGGCGGATGGTCGTGTCTCGCGCTGGGAGCAGATGCGC CGCAGGTTTTCGGAGACGCAGTCCTCTGGGCCGGGTGGCTTCAGAGAGGC CGCGCGGAGAGCGAGCGGCGCCTCGGGTGGGGTCAGGTGGCTCAAGGGGA AAGCGGAGGGTGGCGGGGGGGAGGACGGGTCGCAGGCATAGGATCTTCGA GGGAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12873:2308..3363+

>mRNA_H-canaliculatus_F_contig12873.2396.1 ID=mRNA_H-canaliculatus_F_contig12873.2396.1|Name=mRNA_H-canaliculatus_F_contig12873.2396.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12873:2308..3363+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCTTGAGAAGGATGGGGTGGAAGGAAGGGGAGGGCTTGGGCCGCCG
GTCGGACGGCGCTCTCCAACCGGTGCAGATGCTCTTGAGAAGGATGGGGT
GGAAGGAAGGGGAGGGCTTGGGCCGCCGGTCGGACGGCGCTCTCCAACCG
GTGCAGGTGGAAAGGAGGGGAGAACGGGCGGGGCTCGGGACGACGCAAAA
CTCCAACAACCCGTTCGCGATTGGGGCGGATGGTCGTGTCTCGCGCTGGG
AGCAGATGCGCCGCAGGTTTTCGGAGACGCAGTCCTCTGGGCCGGGTGGC
TTCAGAGAGGCCGCGCGGAGAGCGAGCGGCGCCTCGGGTGGGGTCAGGTG
GCTCAAGGGGAAAGCGGAGGGTGGCGGGGGGGAGGACGGGTCGCAGGCAT
AGGTGGAAAGGAGGGGAGAACGGGCGGGGCTCGGGACGACGCAAAACTCC
AACAACCCGTTCGCGATTGGGGCGGATGGTCGTGTCTCGCGCTGGGAGCA
GATGCGCCGCAGGTTTTCGGAGACGCAGTCCTCTGGGCCGGGTGGCTTCA
GAGAGGCCGCGCGGAGAGCGAGCGGCGCCTCGGGTGGGGTCAGGTGGCTC
AAGGGGAAAGCGGAGGGTGGCGGGGGGGAGGACGGGTCGCAGGCATAG
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