mRNA_H-canaliculatus_F_contig12871.2394.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12871.2394.1 vs. uniprot
Match: D7FTJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTJ8_ECTSI) HSP 1 Score: 221 bits (562), Expect = 5.050e-70 Identity = 105/114 (92.11%), Postives = 109/114 (95.61%), Query Frame = 1
Query: 1 QTFTPSREPLVDNLGRSYGLGRRKTSTARVWISLSTGEGGVFTVNSKPMIDYFPRDHLQNEILKPLEFTRKLGSFHVRCTTKGGGQAGQAGAIRLGLARALEAHDPWLRKFLKK 342
+TFTPSREPLVDNLGRSYGLGRRKTSTARVWISLS GEGGVF VNS+PMIDYFPRDHLQNEILKPLE+T KLG+FHVRCT KGGGQAGQAGAIRLGLARALEAHDPWLRK LKK
Sbjct: 174 KTFTPSREPLVDNLGRSYGLGRRKTSTARVWISLSKGEGGVFMVNSRPMIDYFPRDHLQNEILKPLEYTNKLGNFHVRCTAKGGGQAGQAGAIRLGLARALEAHDPWLRKMLKK 287
BLAST of mRNA_H-canaliculatus_F_contig12871.2394.1 vs. uniprot
Match: A0A7S2A920_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A920_TRICV) HSP 1 Score: 119 bits (298), Expect = 1.230e-30 Identity = 60/109 (55.05%), Postives = 76/109 (69.72%), Query Frame = 1
Query: 13 PSREPLVDNLGRSYGLGRRKTSTARVWISLSTGEGGVFTVNSKPMIDYFPRDHLQNEILKPLEFTRKLGSFHVRCTTKGGGQAGQAGAIRLGLARALEAHDPWLRKFLK 339
P R P +D+ GR+YGLGRRKT+TARVWI +G V TVN P +DYF R+ L+ +IL P TR G F VRC GGG++GQAGA+RLG+ARALE ++P R +K
Sbjct: 153 PVRVPQIDDRGRAYGLGRRKTATARVWIYPGSG---VVTVNKMPFVDYFEREALREDILSPFIVTRTCGQFDVRCYCHGGGKSGQAGAVRLGVARALEKYNPEYRPPMK 258
BLAST of mRNA_H-canaliculatus_F_contig12871.2394.1 vs. uniprot
Match: A0A3R7JDC3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JDC3_9STRA) HSP 1 Score: 116 bits (290), Expect = 5.420e-30 Identity = 58/105 (55.24%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 31 VDNLGRSYGLGRRKTSTARVWISLSTGE-GGVFTVNSKPMIDYFPRDHLQNEILKPLEFTRKLGSFHVRCTTKGGGQAGQAGAIRLGLARALEAHDPWLRKFLKK 342
+D GR+YG GRRKTSTARVW+ S GG VN K ++DYF RD + E+LKP K+G F V CT KGGG GQAGA+R G+ARAL+ +DP R LKK
Sbjct: 99 LDEKGRAYGTGRRKTSTARVWVKQSAEPFGGRIVVNKKDVVDYFVRDTHREEVLKPFSVIEKIGGFDVYCTVKGGGMTGQAGAVRHGIARALQNYDPEYRPALKK 203
BLAST of mRNA_H-canaliculatus_F_contig12871.2394.1 vs. uniprot
Match: A0A0L0D3D9_THETB (30S ribosomal protein S9 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D3D9_THETB) HSP 1 Score: 115 bits (287), Expect = 1.680e-29 Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 1
Query: 31 VDNLGRSYGLGRRKTSTARVWIS-----LSTGEGGVFTVNSKPMIDYFPRDHLQNEILKPLEFTRKLGSFHVRCTTKGGGQAGQAGAIRLGLARALEAHDPWLRKFLK 339
+D LGR+YG GRRKTS ARVW+ + V VNSKP+ DYFP H +N +++PL KLG+F +R T KGGG GQAGA+RLG+ RALE DP RK LK
Sbjct: 99 LDALGRAYGTGRRKTSIARVWVEPVAHPAAPQPADVLVVNSKPLADYFPAMHHRNHVIEPLRLLGKLGAFKIRATVKGGGHTGQAGALRLGICRALEIVDPAFRKPLK 206
BLAST of mRNA_H-canaliculatus_F_contig12871.2394.1 vs. uniprot
Match: A0A6S9GRK8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GRK8_HETAK) HSP 1 Score: 111 bits (278), Expect = 3.650e-28 Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 1
Query: 16 SREPLVDNLGRSYGLGRRKTSTARVWISLSTGEGGVFTVNSKPMIDYFPRDHLQNEILKPLEFTRKLGSFHVRCTTKGGGQAGQAGAIRLGLARALEAHDPWLRKFLKK 342
++EP +D+ GRSYG GRRK + ARVWI GEG FTVNSKPM +YF R Q+++ KP + F V CT +GGG GQAGA+RLGL+RALE ++P+ R LKK
Sbjct: 101 TKEPKIDDQGRSYGTGRRKAAIARVWIK--PGEGN-FTVNSKPMPEYFGRAAHQHDVAKPFLASGTAARFDVLCTVQGGGLTGQAGAVRLGLSRALENYNPFNRPSLKK 206
BLAST of mRNA_H-canaliculatus_F_contig12871.2394.1 vs. uniprot
Match: A0A8K1CU54_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CU54_PYTOL) HSP 1 Score: 112 bits (281), Expect = 8.640e-28 Identity = 59/105 (56.19%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 31 VDNLGRSYGLGRRKTSTARVWISLSTGE-GGVFTVNSKPMIDYFPRDHLQNEILKPLEFTRKLGSFHVRCTTKGGGQAGQAGAIRLGLARALEAHDPWLRKFLKK 342
VD LGR+YG GRRKTSTARVW+ S G VN K ++DYF RD + +ILKP ++G+F V CT KGGG +GQAGAIR GL+RAL+ DP R LKK
Sbjct: 195 VDELGRAYGTGRRKTSTARVWVKRSDKPFDGRIKVNKKDLVDYFVRDTHREDILKPFSVIDEIGNFDVYCTVKGGGLSGQAGAIRHGLSRALQNFDPNYRPLLKK 299
BLAST of mRNA_H-canaliculatus_F_contig12871.2394.1 vs. uniprot
Match: A0A2H6ATC4_9BACT (30S ribosomal protein S9 n=1 Tax=bacterium HR39 TaxID=2035434 RepID=A0A2H6ATC4_9BACT) HSP 1 Score: 107 bits (268), Expect = 1.840e-27 Identity = 56/107 (52.34%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 22 EPLVDNLGRSYGLGRRKTSTARVWISLSTGEGGVFTVNSKPMIDYFPRDHLQNEILKPLEFTRKLGSFHVRCTTKGGGQAGQAGAIRLGLARALEAHDPWLRKFLKK 342
+P +D LGR+Y G RK +TARVWI L G+ FTVN KPM +YF R LQ + +P +LG F V CT GGG +GQAGA+R G+ARAL DP LR LK+
Sbjct: 30 KPKLDELGRAYATGGRKEATARVWIRLGNGQ---FTVNGKPMAEYFRRPTLQMIVNQPFAVIGRLGDFDVYCTVSGGGLSGQAGAVRHGIARALVNFDPTLRPILKQ 133
BLAST of mRNA_H-canaliculatus_F_contig12871.2394.1 vs. uniprot
Match: A0A225UXJ6_9STRA (Mitochondrial/chloroplast ribosomal protein S9 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UXJ6_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.040e-27 Identity = 56/105 (53.33%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 31 VDNLGRSYGLGRRKTSTARVWISLSTGE-GGVFTVNSKPMIDYFPRDHLQNEILKPLEFTRKLGSFHVRCTTKGGGQAGQAGAIRLGLARALEAHDPWLRKFLKK 342
+D+ GR+YG GRRKTS ARVW+ + G VN K ++DYF RD + E+LKP ++G F V CT KGGG GQAGA+R G+ARAL+A DP LR LKK
Sbjct: 186 LDSKGRAYGTGRRKTSVARVWVKPAAQPFTGRVQVNKKDLVDYFVRDTHREEVLKPFSVVEQIGGFDVYCTVKGGGMTGQAGAVRHGIARALQAFDPELRPALKK 290
BLAST of mRNA_H-canaliculatus_F_contig12871.2394.1 vs. uniprot
Match: A0A662WKC1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKC1_9STRA) HSP 1 Score: 112 bits (279), Expect = 3.140e-27 Identity = 58/109 (53.21%), Postives = 69/109 (63.30%), Query Frame = 1
Query: 19 REPLVDNLGRSYGLGRRKTSTARVWISLSTGE-GGVFTVNSKPMIDYFPRDHLQNEILKPLEFTRKLGSFHVRCTTKGGGQAGQAGAIRLGLARALEAHDPWLRKFLKK 342
R VD GR+YG GRRKTSTARVWI + G VN ++DYF RD + E+LKP ++G+F V CT KGGG GQAGA+R GLARAL+ DP R LKK
Sbjct: 230 RHRTVDEQGRAYGTGRRKTSTARVWIKPAAEPFAGRIVVNKMDVVDYFDRDSHREEVLKPFSAVEQIGAFDVYCTVKGGGNTGQAGAVRHGLARALQNWDPEFRPALKK 338
BLAST of mRNA_H-canaliculatus_F_contig12871.2394.1 vs. uniprot
Match: A0A484EH21_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EH21_BRELC) HSP 1 Score: 110 bits (276), Expect = 3.940e-27 Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 1
Query: 19 REPLVDNLGRSYGLGRRKTSTARVWISLSTGEG-GVFTVNSKPMIDYFPRDHLQNEILKPLEFTRKLGSFHVRCTTKGGGQAGQAGAIRLGLARALEAHDPWLRKFLKK 342
R VD GR+YG GRRKTS+ARVWI + G VN K ++DYF RD + E+LKP K+G F V CT KGGG GQ+GA+R G+ARAL+A DP LR +KK
Sbjct: 181 RVRTVDEQGRAYGTGRRKTSSARVWIKPALVPFMGRIQVNKKDLVDYFVRDFHREEVLKPFSVVDKIGGFDVYCTVKGGGLTGQSGAVRHGIARALQAFDPNLRPAMKK 289 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12871.2394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12871.2394.1 >prot_H-canaliculatus_F_contig12871.2394.1 ID=prot_H-canaliculatus_F_contig12871.2394.1|Name=mRNA_H-canaliculatus_F_contig12871.2394.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp QTFTPSREPLVDNLGRSYGLGRRKTSTARVWISLSTGEGGVFTVNSKPMIback to top mRNA from alignment at H-canaliculatus_F_contig12871:109..1753+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12871.2394.1 ID=mRNA_H-canaliculatus_F_contig12871.2394.1|Name=mRNA_H-canaliculatus_F_contig12871.2394.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1645bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12871:109..1753+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12871:109..1753+ >mRNA_H-canaliculatus_F_contig12871.2394.1 ID=mRNA_H-canaliculatus_F_contig12871.2394.1|Name=mRNA_H-canaliculatus_F_contig12871.2394.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12871:109..1753+ (Hapterophycus canaliculatus Oshoro5f female)back to top |