mRNA_H-canaliculatus_F_contig12870.2393.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12870.2393.1
Unique NamemRNA_H-canaliculatus_F_contig12870.2393.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12870.2393.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 9.060e-35
Identity = 69/89 (77.53%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:  811 GTPAPFAPSMCSNGIPGVSADGVCCKEECGMCGGQGCGAVAGTNGASDCCPGTIVEESGGAFCGEAPCVIAGYTPSPVNPAFVGTAAPV 1077
            G   P APS CSNGIPGVS   VCC E CG CGG+GCGA+AGTNGASDCCP TI EESGG FCGEAPCV+AG+TPSP+NPAF GTAAPV
Sbjct:  282 GASDPVAPSTCSNGIPGVSDGDVCCLEACGQCGGEGCGAIAGTNGASDCCPDTIKEESGGVFCGEAPCVMAGFTPSPLNPAFDGTAAPV 370
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BLAST of mRNA_H-canaliculatus_F_contig12870.2393.1 vs. uniprot
Match: A0A6H5JSA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.170e-34
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:  826 FAPSMCSNGIPGVSADGVCCKEECGMCGGQGCGAVAGTNGASDCCPGTIVEESGGAFCGEAPCVIAGYTPSPVNPAFVGTAAPV 1077
             +PS CSNGIPGVS   VCC E CG CGG GCGA+AGTNGASDCCP TI EESGG FCGEAPCV+ G+TPSP+NPA  GTAAPV
Sbjct:    1 MSPSTCSNGIPGVSDGEVCCLEACGQCGGVGCGAIAGTNGASDCCPDTIKEESGGVFCGEAPCVMEGFTPSPLNPALDGTAAPV 84
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BLAST of mRNA_H-canaliculatus_F_contig12870.2393.1 vs. uniprot
Match: D7FZM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.600e-12
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  832 PSMCSNGIPGVSADGVCCKEECGMCGGQGCGAVAGTNGASDCCPGTIVEESGGAFCGE---APCVIAGYTPSP 1041
            PS CSNG+PG      CC   CG+CGG GCG+V GT GASDCCP TI+  +    CG    APC+I   TP+P
Sbjct:    4 PSTCSNGLPGYQDGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSA--RVCGGDIVAPCIIPA-TPAP 73
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BLAST of mRNA_H-canaliculatus_F_contig12870.2393.1 vs. uniprot
Match: D8LML4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML4_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.200e-10
Identity = 44/91 (48.35%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:  817 PAPFAPSMCSNGIPGVSADGVCCKEEC-GMCGGQGCGAVAGTNGASDCCPGTIVEESGGAFCGE-APCVIAG--YTPSPVN-PAFVGTAAP 1074
            P  F  S C NGI GV    VCC EEC G+CGG+GCG++ GTNGA DCC  TI+        G  APC++    YT +P+  P F   AAP
Sbjct:    3 PPDFVASTCPNGIAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSSTILTTGVDCDVGVVAPCIMLNGTYTDAPMAAPTFPPVAAP 93
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BLAST of mRNA_H-canaliculatus_F_contig12870.2393.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.630e-10
Identity = 45/93 (48.39%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:  817 PAPFAPSMCSNGIPGVSADGVCCKEEC-GMCGGQGCGAVAGTNGASDCCPGTIVEESGGAFCGE---APCVIAG--YTPSPVN-PAFVGTAAP 1074
            P  F  S C NG+ GV    VCC EEC G+CGG+GCG++ GTNGA DCC  TI+    G  C E   APC++    YT +P+  P F   AAP
Sbjct:  240 PPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILAT--GVDCEEGVMAPCIMLNGTYTDAPMAAPTFPPAAAP 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12870.2393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FZM1_ECTSI9.060e-3577.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSA0_9PHAE1.170e-3476.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZM0_ECTSI2.600e-1253.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LML4_ECTSI1.200e-1048.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7R2_9PHAE1.630e-1048.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12870contigH-canaliculatus_F_contig12870:109..2619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue7e-09
Seed eggNOG ortholog2880.D8LTS2
EggNOG free text desc.WSC domain
EggNOG OGs2EWMG@1,2SYEH@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1077
Cds size1077
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12870.2393.1prot_H-canaliculatus_F_contig12870.2393.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12870 109..2619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929018.1199074-CDS-H-canaliculatus_F_contig12870:108..4631622929018.1199074-CDS-H-canaliculatus_F_contig12870:108..463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12870 109..463 +
1696845649.1327379-CDS-H-canaliculatus_F_contig12870:108..4631696845649.1327379-CDS-H-canaliculatus_F_contig12870:108..463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12870 109..463 +
1622929018.1426628-CDS-H-canaliculatus_F_contig12870:840..11851622929018.1426628-CDS-H-canaliculatus_F_contig12870:840..1185Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12870 841..1185 +
1696845649.1500623-CDS-H-canaliculatus_F_contig12870:840..11851696845649.1500623-CDS-H-canaliculatus_F_contig12870:840..1185Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12870 841..1185 +
1622929018.161848-CDS-H-canaliculatus_F_contig12870:1455..15301622929018.161848-CDS-H-canaliculatus_F_contig12870:1455..1530Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12870 1456..1530 +
1696845649.1649895-CDS-H-canaliculatus_F_contig12870:1455..15301696845649.1649895-CDS-H-canaliculatus_F_contig12870:1455..1530Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12870 1456..1530 +
1622929018.1766515-CDS-H-canaliculatus_F_contig12870:1890..19441622929018.1766515-CDS-H-canaliculatus_F_contig12870:1890..1944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12870 1891..1944 +
1696845649.1758568-CDS-H-canaliculatus_F_contig12870:1890..19441696845649.1758568-CDS-H-canaliculatus_F_contig12870:1890..1944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12870 1891..1944 +
1622929018.1972628-CDS-H-canaliculatus_F_contig12870:2371..26191622929018.1972628-CDS-H-canaliculatus_F_contig12870:2371..2619Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12870 2372..2619 +
1696845649.185524-CDS-H-canaliculatus_F_contig12870:2371..26191696845649.185524-CDS-H-canaliculatus_F_contig12870:2371..2619Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12870 2372..2619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12870.2393.1

>prot_H-canaliculatus_F_contig12870.2393.1 ID=prot_H-canaliculatus_F_contig12870.2393.1|Name=mRNA_H-canaliculatus_F_contig12870.2393.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=359bp
LLPRSAAASHHAPGEAAAGTLAGQEANDVKINGAFGPLREGGLRILQEVV
ETPAPVDDADPESEAPAETPTPVVEGSDPETPAPEAGVTSVDVVPSSALI
GLVHVNTTHAPPKTFLPRSEEAALDTPTPVQEQGEDAAETPTPVLDTTTP
TPSTEEPVIVETPNPTAETEQPVAEDTPAPPTEPPMAEDTANPTAATDQP
AAEDTPNPTAEADTPTPVEQPTSTESPTSDVSPAHHGTRAPEPVLTTSQA
PRQRSDPPRPTEMPVVPEPVGTPAPFAPSMCSNGIPGVSADGVCCKEECG
MCGGQGCGAVAGTNGASDCCPGTIVEESGGAFCGEAPCVIAGYTPSPVNP
AFVGTAAPV
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mRNA from alignment at H-canaliculatus_F_contig12870:109..2619+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12870.2393.1 ID=mRNA_H-canaliculatus_F_contig12870.2393.1|Name=mRNA_H-canaliculatus_F_contig12870.2393.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2511bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12870:109..2619+ (Hapterophycus canaliculatus Oshoro5f female)
CTGCTTCCTCGCTCCGCGGCAGCCTCGCACCATGCGCCCGGAGAGGCAGC
CGCAGGTACCCTGGCGGGGCAAGAGGCAAACGACGTCAAGATCAACGGCG
CCTTTGGCCCTCTGAGAGAAGGCGGCCTGCGGATTCTGCAGGAAGTGGTA
GAGACGCCTGCCCCGGTGGACGACGCAGACCCTGAGAGTGAGGCTCCCGC
CGAGACTCCCACTCCGGTGGTGGAGGGATCTGACCCCGAGACACCCGCTC
CTGAAGCAGGTGTGACCAGTGTTGATGTTGTACCCTCTTCTGCGTTGATT
GGGCTTGTTCACGTGAACACTACACACGCGCCTCCAAAGACGTTCTTGCC
ACGAAGTTGCACCATCTCCGCTGATCCCTGAGCGTGTCCTTCCCATTTTT
CAGTTTGTAAGCATCGTACCCCCCTCGCTGTACTCGAAAGACGACCATGC
ACGGGAACAGAGAGAGAAATAAGGAAGAGGATAACGAGTGGGAGCGAGAG
ACGGAGGGAGACGACGCAAGACGTGACTGCTATATACGGAGTACTGTGCT
TCGTATGTGCTTGTAGCGTCTTCCGACCTCGATTGGCGTGCTTGCGTACA
AAAAAGGATGTCTCTCGTCTCTGCCGACATTTGTATGTACCACATTACGG
GGATTGTGTTGATCTCGTTCTCGTCCTCCCTCGTCCTCCCTCGTCCTGCT
TCGTCCGTTCTCGTTCCTGCTTCCATCCGAAGGCGAGGAGGCCGCACTGG
ACACTCCCACCCCAGTGCAAGAACAAGGCGAAGACGCGGCAGAGACTCCC
ACCCCAGTCCTGGACACGACCACCCCTACCCCCTCCACCGAAGAGCCCGT
TATCGTGGAAACCCCCAACCCCACGGCCGAGACGGAACAGCCTGTCGCCG
AGGACACCCCTGCGCCACCAACCGAGCCGCCGATGGCAGAAGACACGGCC
AACCCTACCGCAGCGACGGACCAGCCCGCGGCGGAAGACACGCCCAACCC
CACCGCGGAGGCGGACACGCCGACGCCGGTAGAACAGCCTACGTCCACGG
AGTCCCCTACCTCGGACGTTTCTCCTGGTGAGTCTCGTTTTTTCGGCGTC
TTTTTTTCAACTCTTCTCTGCTGTTTGTCGCTTGCGGTCGTCGCCTTCGT
CCTCCATAGGTGGTTCCGTCATGAGCTTGAGACTGTGTTTTTTTTTTGGT
GGGGGTGCCGTGGTTGTTGTGGCCCTGGCCGTTTCTTAGAGAAAGACATG
ACAACACCGTATGAACTCCTCGTGAGGCGTGTCATACGAGACGTGCCTCG
AGGTCTCTGTTGAGTTCCAACAAGAAGAGTCGTGAAACTTGTCCAAGCTC
ACCACGGGACGAGAGCTCCAGAGCCCGTGCTCACCACAAGCCAGGCGCCA
CGCCAACGCTCCGACCCCCCGCGTCGGCCAGGCCTATGGCGGCGAACGGC
GCATGCGTTTAAAGAGAGGGCAAGAGCGGAGCGAAGTCGAGGGCTGTTTG
GATTAGCTTGCGAGCGCAGGGCTTGGGAGAGATAGCGATACTGCCTCTGC
TATCGAGGACGCGTCTCTGACTCCTTCCTCGACGCAGCCGCTGCTCTCTG
TCGATCCGGCAGACACGCCCCGAAGCCCCGCAGCTCTTGTTATGTTATGC
CGTTTTTTGTTTGTTTTTGCAAAGATCGCTCAGTTCCTCGTCGTCGCGAC
GGTTGTCGTGCAGCGACCACTGCTTGACAAAGTCTCACCTGTCCATTTTC
CTCTCACCGCTGCTGTGTCGTCCGTATCGCAGGCCCGACCGAGATGCCTG
TTGTCCCCGAGCCTGTTGGCACTCCTGCTCCATTCGGTGAGATCCACTGC
CCGTTTCTTAGAGATTCACAGCGTCCCTTTTGTTGTTGTTGCGGTGTTGT
TCTTGTTCTTGTTGTTGATGTTGTTGTTGGCGTTGGCGTTTTTGTTGTTG
TTTTCGTCGCTGCTGTAGGCCGGTGCGCTGTGGTACATGGGTAGGTGCGC
TGCGAACAACCCCGGGCACCCTTCAGCACGTTCTCTCCTCACGCACACAG
CCCCCTTCTCTCGAACCTTGCTCCTTCTCGAAGGGGATACGTGGAAACGC
ACTGGTCAGACGGCCCTTCCAATTATTCACAAGTCAACCAACCAACGAAA
CCAGCATTCGTCCCCCCCCCCCCGGGCCTCCTGCTCTGACGAGCTCACCC
TTGCGCAGCTTCCAACGCTTGACTAACGCTTTCACGCGTCCCGCGTTACC
AATACGTTCGCAGCACCGTCCATGTGCTCAAACGGCATCCCGGGCGTCAG
CGCCGACGGCGTCTGCTGCAAGGAAGAGTGCGGCATGTGCGGCGGTCAGG
GCTGCGGCGCTGTCGCGGGCACGAACGGAGCCTCCGATTGCTGCCCGGGC
ACCATCGTCGAGGAGTCCGGCGGGGCCTTCTGCGGAGAGGCCCCGTGTGT
CATTGCAGGGTACACCCCGTCCCCGGTGAACCCCGCCTTCGTCGGCACGG
CCGCTCCTGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12870:109..2619+

>mRNA_H-canaliculatus_F_contig12870.2393.1 ID=mRNA_H-canaliculatus_F_contig12870.2393.1|Name=mRNA_H-canaliculatus_F_contig12870.2393.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2154bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12870:109..2619+ (Hapterophycus canaliculatus Oshoro5f female)
CTGCTTCCTCGCTCCGCGGCAGCCTCGCACCATGCGCCCGGAGAGGCAGC
CGCAGGTACCCTGGCGGGGCAAGAGGCAAACGACGTCAAGATCAACGGCG
CCTTTGGCCCTCTGAGAGAAGGCGGCCTGCGGATTCTGCAGGAAGTGGTA
GAGACGCCTGCCCCGGTGGACGACGCAGACCCTGAGAGTGAGGCTCCCGC
CGAGACTCCCACTCCGGTGGTGGAGGGATCTGACCCCGAGACACCCGCTC
CTGAAGCAGGTGTGACCAGTGTTGATGTTGTACCCTCTTCTGCGTTGATT
GGGCTTGTTCACGTGAACACTACACACGCGCCTCCAAAGACGTTCTTGCC
ACGAACTGCTTCCTCGCTCCGCGGCAGCCTCGCACCATGCGCCCGGAGAG
GCAGCCGCAGGTACCCTGGCGGGGCAAGAGGCAAACGACGTCAAGATCAA
CGGCGCCTTTGGCCCTCTGAGAGAAGGCGGCCTGCGGATTCTGCAGGAAG
TGGTAGAGACGCCTGCCCCGGTGGACGACGCAGACCCTGAGAGTGAGGCT
CCCGCCGAGACTCCCACTCCGGTGGTGGAGGGATCTGACCCCGAGACACC
CGCTCCTGAAGCAGGTGTGACCAGTGTTGATGTTGTACCCTCTTCTGCGT
TGATTGGGCTTGTTCACGTGAACACTACACACGCGCCTCCAAAGACGTTC
TTGCCACGAAGCGAGGAGGCCGCACTGGACACTCCCACCCCAGTGCAAGA
ACAAGGCGAAGACGCGGCAGAGACTCCCACCCCAGTCCTGGACACGACCA
CCCCTACCCCCTCCACCGAAGAGCCCGTTATCGTGGAAACCCCCAACCCC
ACGGCCGAGACGGAACAGCCTGTCGCCGAGGACACCCCTGCGCCACCAAC
CGAGCCGCCGATGGCAGAAGACACGGCCAACCCTACCGCAGCGACGGACC
AGCCCGCGGCGGAAGACACGCCCAACCCCACCGCGGAGGCGGACACGCCG
ACGCCGGTAGAACAGCCTACGTCCACGGAGTCCCCTACCTCGGACGTTTC
TCCTGGCGAGGAGGCCGCACTGGACACTCCCACCCCAGTGCAAGAACAAG
GCGAAGACGCGGCAGAGACTCCCACCCCAGTCCTGGACACGACCACCCCT
ACCCCCTCCACCGAAGAGCCCGTTATCGTGGAAACCCCCAACCCCACGGC
CGAGACGGAACAGCCTGTCGCCGAGGACACCCCTGCGCCACCAACCGAGC
CGCCGATGGCAGAAGACACGGCCAACCCTACCGCAGCGACGGACCAGCCC
GCGGCGGAAGACACGCCCAACCCCACCGCGGAGGCGGACACGCCGACGCC
GGTAGAACAGCCTACGTCCACGGAGTCCCCTACCTCGGACGTTTCTCCTG
CTCACCACGGGACGAGAGCTCCAGAGCCCGTGCTCACCACAAGCCAGGCG
CCACGCCAACGCTCCGACCCCCCGCCTCACCACGGGACGAGAGCTCCAGA
GCCCGTGCTCACCACAAGCCAGGCGCCACGCCAACGCTCCGACCCCCCGC
GCCCGACCGAGATGCCTGTTGTCCCCGAGCCTGTTGGCACTCCTGCTCCA
TTCGGCCCGACCGAGATGCCTGTTGTCCCCGAGCCTGTTGGCACTCCTGC
TCCATTCGCACCGTCCATGTGCTCAAACGGCATCCCGGGCGTCAGCGCCG
ACGGCGTCTGCTGCAAGGAAGAGTGCGGCATGTGCGGCGGTCAGGGCTGC
GGCGCTGTCGCGGGCACGAACGGAGCCTCCGATTGCTGCCCGGGCACCAT
CGTCGAGGAGTCCGGCGGGGCCTTCTGCGGAGAGGCCCCGTGTGTCATTG
CAGGGTACACCCCGTCCCCGGTGAACCCCGCCTTCGTCGGCACGGCCGCT
CCTGTTCACCGTCCATGTGCTCAAACGGCATCCCGGGCGTCAGCGCCGAC
GGCGTCTGCTGCAAGGAAGAGTGCGGCATGTGCGGCGGTCAGGGCTGCGG
CGCTGTCGCGGGCACGAACGGAGCCTCCGATTGCTGCCCGGGCACCATCG
TCGAGGAGTCCGGCGGGGCCTTCTGCGGAGAGGCCCCGTGTGTCATTGCA
GGGTACACCCCGTCCCCGGTGAACCCCGCCTTCGTCGGCACGGCCGCTCC
TGTT
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