|
|
Homology
BLAST of mRNA_H-canaliculatus_F_contig1287.2392.1 vs. uniprot
Match: D8LB35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB35_ECTSI) HSP 1 Score: 670 bits (1729), Expect = 7.580e-227 Identity = 443/888 (49.89%), Postives = 527/888 (59.35%), Query Frame = 1
Query: 28 DEHGV--EYLPTLQTHSLDAVQVPDSVVKEWRRRKGVGTT--KAVAGTAVVPVGHAQNSKPVATTTENGEIGRHTPFATPHAVPRLSRCLRRIKKMVPLDERGIWLLNHLLSQTDPEDQEELCRSVQEKLRKRKATLIRSKDRLKLECDRRCVFTKAANEIRTASAMIAEINRCNVLATIVKDHNHATRRSGQKRRQKQLLGRMNSAATSVP---PSTATHAHGESGSSKSYPEENNGSRARGESKEHRARQEKQSSKDTRGPRNEILVPLAVPPPPLLLSTKMAKAPTSGRMVSTSFDPASKADVAGAASASAHNDASCDRRAG----NKS-SAP--QNEGVSHLPSSFEGVRSQIPLGSQGRGTSALL-GAGLSIARRKRAGWHQNPRSMGGGRRFGLPPLDERYGESVVDSWVQSPVALRLERPRCKSVDVAHLDQQAHQEYIEGIFRAGAAAAQRRGQKRR----DGEEQGVMGEEAYNSSDLGSKSIATRQRRTKAGRSTRLISDPIEEEAGDSGDGGRALPPISSIPPSLPHLGGPGTGVFALASCDTEPTTGGMAHDGGGPVVSDRSPDFPPWKTSCVSRADDGSSQRVNVDEKLKSEALGFRSDGARKVFKQTQRLLEALRTPAGSCQVDPRTGARRGCGGGNVGGHSXXXXXXXXNNLHHGPGAGIGGDKAXXXXXXXXXXXXXXXXXXDTSSTSAGAAFLNHLPESDTAMWRVPRGDRPARLAEVFRCIAAPHIVRIECEIILHNSLTRPGGGRDGDGGTSGGG-SCTWDDFVFAWECLADGILAGRALSGYWEHAHHDHGGANSALARSQRAADDLLSDGLMRALLSTRCYRPPGLDQLFVEWLDELLEVVRAYARRACSRVPSQHGLTAGLEWFEE 2631
DE+G E LPTL+THSLD V VPDSV+KEWRRRKG+G +AV +AV G TE GR + A+P LSRCLRRIKKM PLDERG+WLLN+LLSQT EDQEELC SVQ+KL KRK LIRSKDRLKLECDRRCVFT+A NE+RT SAM A+ NRCN+LAT+VK+H +A R + Q RR +Q NSAA + P PST E G+ + AR E + EK+ S D R + E P +LLS MAK +SG MV+ A DA+ RRAG N++ +AP ++ G+ + +S E V GR AL GA +++ + R G +Q + MG R GLP + ERYG SV+++WVQSPVAL+LERPRCKSV +AHLDQ A++EY+E + R AA +RR Q+ DG QGV G ++D G ++ +T G S+ L +E A +S + PP S+P S +LGG G G+F SC+ E D G R + D S+ DE L SE LG RS GARKVFKQTQRLLEALRTP+ SCQ DP TGARR CGGGN+GGHS + H G G GD+ G A + SD+ MWR PRG+R ARL EV C+A PH VRIECEIILH SL+R G R+G+GGTSGGG S TWDDFVFAWECL DGILAGRALSGYWEHAH D R QRAADDLLSDGLMRALLSTRCYRPPG DQLFVEWLDELLEVVR + RRAC RVP QHGLTAGLEWF+E
Sbjct: 12 DENGADDECLPTLRTHSLDGVVVPDSVLKEWRRRKGLGAPAEQAVQQSAVAKGGG----------TEVAIGGRFSSPASPRPGATLSRCLRRIKKMAPLDERGMWLLNNLLSQTRVEDQEELCWSVQDKLSKRKGALIRSKDRLKLECDRRCVFTRATNEVRTTSAMTAQANRCNILATVVKEHQNARRSNDQSRRHRQPPDNTNSAANTAPLAPPSTTADRRKEKGALRGKEVAKEKEVAR----EIISLNEKEGSNDRRVSKAEGRGSPPEYPSSILLSINMAKMRSSGEMVA------------------AGGDATLPRRAGRTRPNRTRNAPFARHGGLLQVAASEECVVPPASSSLHGRDVPALAEGAPVAVGK-TRGGRYQKKKPMGRVGRLGLPSISERYGTSVMENWVQSPVALKLERPRCKSVAIAHLDQPAYREYMEAVIRVRAAQTRRRWQQSTRDDTDGVGQGVTGCWKGTTNDCGIILTTQQEGKTTLGCSSHLCH--VEPRAFNSQN-----PPKISLPTSCSNLGGGGKGMFGRTSCEIEKRLHHGEDDERGEFGRARLRTLTKTTSHAPGHGSD-ISKIATADEILTSEGLGLRSKGARKVFKQTQRLLEALRTPSESCQYDPETGARRNCGGGNIGGHSSVVVHYHQS--HSGSGPATVGDRLHRGG----------------GGDPGGDAKVTDPKFSDSGMWRAPRGNRSARLKEVLDCVAPPHTVRIECEIILHESLSRAGDRREGNGGTSGGGGSGTWDDFVFAWECLGDGILAGRALSGYWEHAHQDGSDHTPTNGRLQRAADDLLSDGLMRALLSTRCYRPPGRDQLFVEWLDELLEVVRTHVRRACLRVPVQHGLTAGLEWFQE 840
BLAST of mRNA_H-canaliculatus_F_contig1287.2392.1 vs. uniprot
Match: A0A6H5KQT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQT4_9PHAE) HSP 1 Score: 333 bits (854), Expect = 8.350e-100 Identity = 284/702 (40.46%), Postives = 344/702 (49.00%), Query Frame = 1
Query: 514 MIAEINRCNVLATIVKDHNHATRRSGQKRRQKQLLGRMNSAATSVP---PS-TATHAHGESGSSKSYPEENNGSRARGESKEHRARQ------EKQSSKDTRGPRNEILVPLAVPPPPLLLSTKMAKAPTSGRMVSTSFDPASKADVAGAASASAHNDASCDRRAGNKS-----SAPQ--NEGVSHLPSSFEGVRSQIPLGSQGRGTSALLGAGLSIARRKRAGWHQNPRSMGGGRRFGLPPLDERYGESVVDSWVQSPVALRLERPRCKSVDVAHLDQQAHQEYIEGIFRAGAAAAQRRGQKRR----DGEEQGVMGEEAYNSSDLGSKSIATRQRRTKAGRSTRLISDPIEEEAGDSGDGGRALPPISSIPPSLPHLGGPGTGVFALASCDTEPTTGGMAH---DGGGPVVSDRSPDFPPWKTSCVSRADDGSSQRVNVDEKLKSEALGFRSDGARKVFKQTQRLLEALRTPAGSCQVDPRTGARRGCGGGNVGGHSXXXXXXXXNNLHHGPGA-------GIGGDKAXXXXXXXXXXXXXXXXXXDTSSTSAGAAFLNHLPESDTAMWRVPRGDRPARLAEVFRCIAAPHIVRIECEIILHNSLTRPGGGRDGDGGTSGGGSCTWDDFVFAWECLADGILAGRALSGYWEHAHHDHGGANSALARSQRAADDLLSDGLMRALLSTRCYRPPGLDQLFVE 2526
M AE NRCN+LATIVK+H +A R + Q RR L + NS AT+ P PS TA G+ R + +KE EK+ SKD R + E P + LS MAK +SG + + AG DA+ RRA K +AP + G+ + +S E V GR AL A R G ++ + G R GLP + ERYG SV+++WV SPV+L+LERPRCKSV +AHLDQ A++ Y+E I R GAA +RR ++ DG QGV G + + +I T Q++ KA +E +S P P++GG G G+F SC+ E G+ H D G + R + D SS DE L SE L RS GARKVFKQTQRLLEALRTP+ SCQ DP TGARR CGGGN+GGHS ++ GP G GGD G A + SD MWR PRGDR ARL EV C+A PH VRIE EIILH SL+R G GR+ + GTSGGGS TWDDFVFAWE DG DH N L QRAADDLLSDGLMRALLSTRCYRPPG DQLFVE
Sbjct: 1 MTAEANRCNMLATIVKEHQNARRCNDQSRRP---LDKTNSGATTAPLASPSFTADRRKGKGAL-----------RGKEAAKEKEVXXXXXXXXEKEGSKDRRVSKAEGRGSPPGRPSSIPLSIHMAKMQSSGEI-----------EAAGG-------DATLPRRAERKRPKRTRNAPLAGHGGLLQVAASEECVVPPAFFSLSGRDVPALAEGIPVTACGVRGGRYEKNKPTGRVARLGLPSISERYGASVIENWVLSPVSLKLERPRCKSVAIAHLDQPAYRAYMEEIVRVGAAQTRRRWRQSTLDDTDGVGQGVTG--CWKGTTNDCSNILTNQQQGKAAVGWSSHRCDVEPRV------------FNSKRP--PNIGGGGKGMFGRTSCEMEK---GLPHGEDDERGELGRTRLSTLTKTPSRAPGHGRD-SSTIATADEILTSEGLELRSKGARKVFKQTQRLLEALRTPSASCQYDPETGARRNCGGGNIGGHSSVVVHYHQSHSGSGPATVRDRLHRGGGGDPD-------------------------GDAKVTDPKFSDGGMWRAPRGDRSARLKEVLDCVAPPHTVRIESEIILHESLSRAGDGREDNEGTSGGGSGTWDDFVFAWE---DGS---------------DHTPTNGRL---QRAADDLLSDGLMRALLSTRCYRPPGRDQLFVE 604
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-27_005380.1 |
| Exons | 6 |
| Model size | 2640 |
| Cds size | 2640 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929018.0163462-CDS-H-canaliculatus_F_contig1287:19483..19597 | 1622929018.0163462-CDS-H-canaliculatus_F_contig1287:19483..19597 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1287 19484..19597 - |
| 1696845649.0454702-CDS-H-canaliculatus_F_contig1287:19483..19597 | 1696845649.0454702-CDS-H-canaliculatus_F_contig1287:19483..19597 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1287 19484..19597 - |
| 1622929018.0288324-CDS-H-canaliculatus_F_contig1287:20144..20342 | 1622929018.0288324-CDS-H-canaliculatus_F_contig1287:20144..20342 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1287 20145..20342 - |
| 1696845649.0598083-CDS-H-canaliculatus_F_contig1287:20144..20342 | 1696845649.0598083-CDS-H-canaliculatus_F_contig1287:20144..20342 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1287 20145..20342 - |
| 1622929018.044823-CDS-H-canaliculatus_F_contig1287:21117..21845 | 1622929018.044823-CDS-H-canaliculatus_F_contig1287:21117..21845 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1287 21118..21845 - |
| 1696845649.0699587-CDS-H-canaliculatus_F_contig1287:21117..21845 | 1696845649.0699587-CDS-H-canaliculatus_F_contig1287:21117..21845 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1287 21118..21845 - |
| 1622929018.0573235-CDS-H-canaliculatus_F_contig1287:22034..23167 | 1622929018.0573235-CDS-H-canaliculatus_F_contig1287:22034..23167 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1287 22035..23167 - |
| 1696845649.079135-CDS-H-canaliculatus_F_contig1287:22034..23167 | 1696845649.079135-CDS-H-canaliculatus_F_contig1287:22034..23167 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1287 22035..23167 - |
| 1622929018.071025-CDS-H-canaliculatus_F_contig1287:23647..23760 | 1622929018.071025-CDS-H-canaliculatus_F_contig1287:23647..23760 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1287 23648..23760 - |
| 1696845649.0976439-CDS-H-canaliculatus_F_contig1287:23647..23760 | 1696845649.0976439-CDS-H-canaliculatus_F_contig1287:23647..23760 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1287 23648..23760 - |
| 1622929018.0829787-CDS-H-canaliculatus_F_contig1287:24500..24854 | 1622929018.0829787-CDS-H-canaliculatus_F_contig1287:24500..24854 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1287 24501..24854 - |
| 1696845649.1110594-CDS-H-canaliculatus_F_contig1287:24500..24854 | 1696845649.1110594-CDS-H-canaliculatus_F_contig1287:24500..24854 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1287 24501..24854 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1287.2392.1 >prot_H-canaliculatus_F_contig1287.2392.1 ID=prot_H-canaliculatus_F_contig1287.2392.1|Name=mRNA_H-canaliculatus_F_contig1287.2392.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=880bp
MGRTLILLVDEHGVEYLPTLQTHSLDAVQVPDSVVKEWRRRKGVGTTKAV
AGTAVVPVGHAQNSKPVATTTENGEIGRHTPFATPHAVPRLSRCLRRIKK
MVPLDERGIWLLNHLLSQTDPEDQEELCRSVQEKLRKRKATLIRSKDRLK
LECDRRCVFTKAANEIRTASAMIAEINRCNVLATIVKDHNHATRRSGQKR
RQKQLLGRMNSAATSVPPSTATHAHGESGSSKSYPEENNGSRARGESKEH
RARQEKQSSKDTRGPRNEILVPLAVPPPPLLLSTKMAKAPTSGRMVSTSF
DPASKADVAGAASASAHNDASCDRRAGNKSSAPQNEGVSHLPSSFEGVRS
QIPLGSQGRGTSALLGAGLSIARRKRAGWHQNPRSMGGGRRFGLPPLDER
YGESVVDSWVQSPVALRLERPRCKSVDVAHLDQQAHQEYIEGIFRAGAAA
AQRRGQKRRDGEEQGVMGEEAYNSSDLGSKSIATRQRRTKAGRSTRLISD
PIEEEAGDSGDGGRALPPISSIPPSLPHLGGPGTGVFALASCDTEPTTGG
MAHDGGGPVVSDRSPDFPPWKTSCVSRADDGSSQRVNVDEKLKSEALGFR
SDGARKVFKQTQRLLEALRTPAGSCQVDPRTGARRGCGGGNVGGHSSIVV
HHHQNNLHHGPGAGIGGDKAKGGGVGGGGKGNGNGNGIDTSSTSAGAAFL
NHLPESDTAMWRVPRGDRPARLAEVFRCIAAPHIVRIECEIILHNSLTRP
GGGRDGDGGTSGGGSCTWDDFVFAWECLADGILAGRALSGYWEHAHHDHG
GANSALARSQRAADDLLSDGLMRALLSTRCYRPPGLDQLFVEWLDELLEV
VRAYARRACSRVPSQHGLTAGLEWFEEVR* back to topmRNA from alignment at H-canaliculatus_F_contig1287:19484..24854- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1287.2392.1 ID=mRNA_H-canaliculatus_F_contig1287.2392.1|Name=mRNA_H-canaliculatus_F_contig1287.2392.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5371bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1287:19484..24854- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGCGAACTCTAATACTGCTGGTCGATGAACACGGGGTCGAGTATTT
ACCGACTCTTCAGACACACTCCCTCGACGCAGTTCAAGTCCCAGATTCCG
TTGTGAAGGAATGGAGGCGACGCAAAGGGGTTGGGACGACGAAAGCAGTG
GCAGGGACGGCAGTAGTACCAGTGGGGCACGCGCAAAACTCGAAGCCGGT
GGCTACGACCACCGAAAATGGGGAAATAGGGCGTCATACTCCATTTGCTA
CTCCACACGCTGTGCCGAGGTTAAGTCGCTGCCTACGAAGAATAAAAAAG
ATGGTCCCATTGGATGAGCGGGGCATATGGCTCTTGAACCACCTCCTCTC
GCAGGTGAGACTTTACGATGGTCACGGAGCAAGTTCACCTTATCGCAGGC
ACGTGTCCATCTAGCACCGAATACTGCAGGCACGAGCTATGTATGGAACC
TGGCGGAGGAGATGCTCGGTACGTACGTTGCAAAATTACTGATCATTTAC
AACATGGGCCAGCCTCCCAGGGATCCCGGAAGAAGACGTGTAAAAGTATC
ATCGTAGATCCCGCGACCCCCGCGGAAGTTGATTATCTCGATTTCCTGTA
GTCTAGATTAAAAAGGCAATTTGGCGTGAGCTTGTTCCCATGTGACGAAT
CAGGTATACCAGGTAGTATTGTTCCTGCTTCCGTGCAGTTAACCCCTCCC
CATCCCGAAGGTCATGACCCCCCCCCCCCAGGGATTGGATAAGTATATTA
ATCCCCTGACTCGTGGGGATGACATTTCGCGAGAAAGCATACGACAATGT
TTTACGCAACACGTACCCGCCTAGCCCTTTGCGAGGGCTGATGGCATGCA
GCGTTCCTGAAGAACGCCAAAGCATTCATCGGTTGCACGTAGGGTGTGTA
TGATTTAATATGGATGACCCTGCACATAACCGAGCAATCGAGACACTTCA
GTCAGTTGCAGGAGAAAATTAACGATAATTTACAAAGCTGCAGGATGGGT
CTTTGGAGGAGACCAGCCAAAAGTTCCCACCATCTGGGTTGGGTTCAGGG
TTCCAAGAAACGAACGACACCCCAACTTATTATGTGCGTCGCAGACTGAT
CCAGAAGATCAGGAGGAACTCTGCCGGTCCGTCCAAGAAAAGCTTCGAAA
GCGCAAGGCTACTCTCATCCGTTCGAAGGACCGCCTCAAGCTCGAGTGTG
ATCGAAGGTACGATATCATTATTGGAGACGGCACGACCGTACTGGCCTAT
CCGAAGCTGTGCTCGTCTTTTTGACACCCGCCAACCCTTCTTTCTTGACC
CTTTGGACAAGCAAGCTGAAGAGTGTGAAAAATTTAGCAAGTCATGAACT
CCCAAGGTTAAGAGTTAGACCAATCTCTCACATGGATACACTGATGGTAT
CGATTTTTACCCCGTGGACTGTATACATGGGATTCTAATGACGCTGTCAA
CCCCAACATGTTGCGTCTGATCGCCTCCTTAGACGAGACTTTCTGCACTC
GTGTACATAACTGCCAACGGTACGCGTGGAACAATCGCCCTCCCTTGTGC
CTTGCTCCGTGAAGCGCGACCAGCATCCCGCATTGCCTCGCATCTTCACG
AATTATATAGAAGTATCGCTATTTTGTTGGCCTTTGTAAGATTCCATTCC
CTCTTTTTGACGAACGCCCGCTAAACTCCTCATCAAGATGCGTTTTCACG
AAAGCCGCGAACGAGATTCGCACCGCTAGTGCAATGATTGCCGAGATAAA
CCGCTGCAACGTCCTCGCGACGATCGTCAAGGACCACAACCACGCTACGC
GCCGCAGCGGCCAAAAGCGTCGGCAGAAGCAGCTTCTTGGCCGGATGAAC
TCTGCCGCAACTTCCGTCCCTCCCTCGACCGCCACCCATGCTCATGGGGA
ATCGGGATCGTCAAAATCTTATCCGGAGGAAAATAATGGGTCGAGAGCAC
GGGGGGAGTCGAAGGAACATCGAGCTAGACAGGAAAAACAAAGCTCGAAG
GATACGCGAGGTCCAAGAAACGAAATTCTCGTACCGTTGGCGGTGCCTCC
ACCACCCCTTCTCCTTTCGACAAAGATGGCGAAAGCCCCTACGTCCGGGA
GAATGGTATCAACGAGCTTTGATCCGGCCTCCAAAGCTGATGTTGCTGGT
GCTGCTTCTGCTTCTGCCCACAACGATGCCTCGTGCGACCGTCGAGCAGG
AAATAAATCGTCTGCTCCCCAAAACGAAGGTGTCTCACACCTGCCGTCTT
CCTTCGAGGGCGTTCGATCGCAGATACCTCTTGGCAGTCAGGGGCGAGGC
ACTTCAGCGCTCCTTGGGGCCGGGCTTTCCATCGCACGCCGGAAAAGAGC
GGGATGGCATCAGAACCCGAGATCGATGGGGGGGGGGCGGCGCTTCGGGT
TGCCTCCACTCGATGAGCGGTACGGCGAAAGTGTGGTAGATAGCTGGGTC
CAATCGCCCGTTGCGCTCAGGCTGGAGAGGCCTAGGTGCAAGAGCGTGGA
CGTCGCCCATCTTGATCAACAGGCTCACCAGGAGTACATCGAGGGAATTT
TTCGAGCGGGAGCGGCTGCGGCGCAGCGTCGCGGGCAAAAGCGCAGAGAC
GGCGAAGAGCAGGGGGTGATGGGTGAAGAGGCATATAACAGCAGCGACTT
GGGAAGCAAGTCGATCGCTACTCGGCAGCGAAGGACGAAGGCAGGTCGAT
CTACCCGACTGATCTCGGACCCCATCGAAGAAGAAGCTGGAGACAGCGGC
GATGGCGGGCGTGCTCTACCGCCCATTTCATCCATTCCCCCCTCGTTACC
CCACCTAGGCGGACCAGGCAGTAGTGACAAAGAAACGGGTGCCACTGCAG
CCGCAGAACAATCTCCGAATAAGAGTAAGCGTGAGGATGATGTCTATACG
CACGGAAACCTTGTCTGCGGGAGAGTTGACGGCAGCGAAGCCGTATCAGC
CTTGACCGCCGCTACCCTCCCGCGCACGGCATCCATTCGCCAGCTAACGG
GGGGTAGAGCAGGAGTATTTGCTCTCGCAAGCTGCGATACTGAGCCAACC
ACAGGTGGTATGGCACACGACGGTGGCGGTCCGGTCGTCAGTGACAGGAG
TCCAGATTTTCCGCCTTGGAAAACGTCCTGCGTTTCCCGTGCCGACGATG
GCAGCAGTCAAAGGGTGAACGTTGACGAAAAGCTCAAGTCCGAGGCCCTC
GGCTTCCGCTCCGATGGCGCGCGAAAAGTATTCAAGCAGACACAGCGTTT
ACTGGAAGCGTTGCGTACGCCCGCAGGGAGCTGCCAGGTCGACCCAAGGA
CAGGGGCTCGCAGGGGCTGCGGGGGCGGCAACGTCGGAGGGCACTCGAGC
ATCGTCGTCCACCATCACCAAAACAACTTACATCACGGGCCTGGGGCGGG
GATAGGAGGCGATAAGGCCAAGGGCGGTGGTGTTGGCGGAGGCGGGAAAG
GCAATGGCAACGGCAACGGCATTGATACAAGTAGCACCAGTGCCGGCGCG
GCATTTCTCAACCATCTTCCGGAGAGCGATACCGCGATGTGGCGAGTGCC
TCGAGGAGACAGGCCGGCGCGTCTAGCGGAGGTGTTCCGCTGTATCGCTG
CCCCTCACATCGTGCGCATTGAATGCGAAATCATCCTCCACAACTCTCTA
ACCAGGCCTGGCGGTGGGCGGGATGGGGACGGGGGAACAAGCGGCGGCGG
CAGCTGCACATGGGACGACTTTGTGTTTGCTTGGGAGGTGAGAGAACACG
TATACTTCCTGTGCTCGGTTGGGGGGCGACTTACTAGGTATCTTGTATCT
ACGAATGTCGCTCGACGTCTGCGCCACAGCCGTATGTAGTGCAACTTGAG
GGGTCCTGGTTCGAAGCGCCTTTGACCCCACGACTTCTCGCGCGATGACT
GTTTCTGAAGCGAGCAAGCCAACGAACACCACGCAAACAGGTGGAAGACT
TCCGAGCGGTTTGTGCCGTTTCGCCTTGCTCCCGATGGATCGGAGTGCTT
ATGCTGGGATATTCCGCCCACGGCCCCTCACCTCCGAGCTCAATTGCCGC
GGTCTACGGCAGTTCGAAAGAAAATATGACCAAGCTCAATCGCTTCGGTG
GGGTTGGTGCGGACTAGGAGCGCATGTCATGCACCTGCAAATGCGCATTT
CGCTGTCGTGAGTTGCAGTCGACTTGATTAAACACAAGGCATTTTTCTCT
TCTTGCTGAACACGTTTAAAATAACAGGACGCAAGGACTGGCTATGTTGG
TAGTGCCAAACTTGAGCGCTATTGGTGCGCAACGACCACGATAAAATGAG
CGTAGAATAGTGCGCTGAGCCATACGTACATCATGTCCGTTTGGACGTGA
ACCGCTGACGTTGTTGTAATTATTGGATAAACACAAAGGCAAGGAAGAAA
CGAAGAGGACATCCGCCAAAAGGGGAAGGGCTGGACGTATTGAGCGATTT
CCAAACCAAAAAGCATCAAGATGTGTCCCGTTCGCCGTAAACCCTTTCCG
CGGCTGTGGCAGTGTTTGGCAGACGGAATTCTCGCCGGACGAGCTCTGAG
CGGCTACTGGGAGCATGCGCACCACGACCACGGCGGGGCCAACTCTGCTC
TCGCTAGGTCGCAGCGAGCGGCGGACGATCTCCTCTCGGATGGACTGATG
CGCGCGCTACTGTCGACGAGGTGTTATCGGCCGCCGGGGTTGGACCAACT
TTTCGTTGAGGTGCGGGACTGGTTTGACTGTTGGCTCCGGTAGCTACTCG
AGACGAAGTCAAATTCTTGAAAGCTTTCCGCGCTTATCAAATAGTCCAAG
TCAATTCACATGGTTTTGCATGTACGGCATCATGTTCGTGTGTTGTTCGT
CATCCCACCGCTGGATTTTTGTCAGACCCTCTTCCAAATCTGAGTTTCCA
AGTTTGAGCATCGTTCAAAAGAGGGGGTTGCAGCATTCGAACCGCTTTGT
GGGCATATTGTTTTTGTCCCCTTTCCACGCCTCGGACGTTCGCGTTTGGC
AAGATGTTTGGCGTACGCGGCAACGACAAATCTGCTTACCCCTGGGTCTT
ACTATGTCTCTCTGTCTCCGTCTCATACGTACGCCTTGGGGAGCCGAGCA
GATCAGGGCCCCGCGTGCCAGTCTTCGGTCTTTCCCGCCGTGTTTCTGTC
CTCATGTACTCATATCTTCTTCTCTCTGTCTGTCCCTTCGCTCTCTCCTT
GTCTCTTCCTTCCGACAATTATTGCACCTTCGTCGATGGATCCCATGTTT
CGGTAAGTGGTTGGATGAGCTCTTGGAGGTGGTAAGGGCTTACGCGAGAC
GGGCCTGCTCGAGGGTTCCTTCGCAGCATGGCTTGACGGCCGGGTTGGAG
TGGTTTGAAGAGGTACGGTAG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1287:19484..24854- >mRNA_H-canaliculatus_F_contig1287.2392.1 ID=mRNA_H-canaliculatus_F_contig1287.2392.1|Name=mRNA_H-canaliculatus_F_contig1287.2392.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=5280bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1287:19484..24854- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGCGAACTCTAATACTGCTGGTCGATGAACACGGGGTCGAGTATTT
ACCGACTCTTCAGACACACTCCCTCGACGCAGTTCAAGTCCCAGATTCCG
TTGTGAAGGAATGGAGGCGACGCAAAGGGGTTGGGACGACGAAAGCAGTG
GCAGGGACGGCAGTAGTACCAGTGGGGCACGCGCAAAACTCGAAGCCGGT
GGCTACGACCACCGAAAATGGGGAAATAGGGCGTCATACTCCATTTGCTA
CTCCACACGCTGTGCCGAGGTTAAGTCGCTGCCTACGAAGAATAAAAAAG
ATGGTCCCATTGGATGAGCGGGGCATATGGCTCTTGAACCACCTCCTCTC
GCAGATGGGGCGAACTCTAATACTGCTGGTCGATGAACACGGGGTCGAGT
ATTTACCGACTCTTCAGACACACTCCCTCGACGCAGTTCAAGTCCCAGAT
TCCGTTGTGAAGGAATGGAGGCGACGCAAAGGGGTTGGGACGACGAAAGC
AGTGGCAGGGACGGCAGTAGTACCAGTGGGGCACGCGCAAAACTCGAAGC
CGGTGGCTACGACCACCGAAAATGGGGAAATAGGGCGTCATACTCCATTT
GCTACTCCACACGCTGTGCCGAGGTTAAGTCGCTGCCTACGAAGAATAAA
AAAGATGGTCCCATTGGATGAGCGGGGCATATGGCTCTTGAACCACCTCC
TCTCGCAGACTGATCCAGAAGATCAGGAGGAACTCTGCCGGTCCGTCCAA
GAAAAGCTTCGAAAGCGCAAGGCTACTCTCATCCGTTCGAAGGACCGCCT
CAAGCTCGAGTGTGATCGAAGACTGATCCAGAAGATCAGGAGGAACTCTG
CCGGTCCGTCCAAGAAAAGCTTCGAAAGCGCAAGGCTACTCTCATCCGTT
CGAAGGACCGCCTCAAGCTCGAGTGTGATCGAAGATGCGTTTTCACGAAA
GCCGCGAACGAGATTCGCACCGCTAGTGCAATGATTGCCGAGATAAACCG
CTGCAACGTCCTCGCGACGATCGTCAAGGACCACAACCACGCTACGCGCC
GCAGCGGCCAAAAGCGTCGGCAGAAGCAGCTTCTTGGCCGGATGAACTCT
GCCGCAACTTCCGTCCCTCCCTCGACCGCCACCCATGCTCATGGGGAATC
GGGATCGTCAAAATCTTATCCGGAGGAAAATAATGGGTCGAGAGCACGGG
GGGAGTCGAAGGAACATCGAGCTAGACAGGAAAAACAAAGCTCGAAGGAT
ACGCGAGGTCCAAGAAACGAAATTCTCGTACCGTTGGCGGTGCCTCCACC
ACCCCTTCTCCTTTCGACAAAGATGGCGAAAGCCCCTACGTCCGGGAGAA
TGGTATCAACGAGCTTTGATCCGGCCTCCAAAGCTGATGTTGCTGGTGCT
GCTTCTGCTTCTGCCCACAACGATGCCTCGTGCGACCGTCGAGCAGGAAA
TAAATCGTCTGCTCCCCAAAACGAAGGTGTCTCACACCTGCCGTCTTCCT
TCGAGGGCGTTCGATCGCAGATACCTCTTGGCAGTCAGGGGCGAGGCACT
TCAGCGCTCCTTGGGGCCGGGCTTTCCATCGCACGCCGGAAAAGAGCGGG
ATGGCATCAGAACCCGAGATCGATGGGGGGGGGGCGGCGCTTCGGGTTGC
CTCCACTCGATGAGCGGTACGGCGAAAGTGTGGTAGATAGCTGGGTCCAA
TCGCCCGTTGCGCTCAGGCTGGAGAGGCCTAGGTGCAAGAGCGTGGACGT
CGCCCATCTTGATCAACAGGCTCACCAGGAGTACATCGAGGGAATTTTTC
GAGCGGGAGCGGCTGCGGCGCAGCGTCGCGGGCAAAAGCGCAGAGACGGC
GAAGAGCAGGGGGTGATGGGTGAAGAGGCATATAACAGCAGCGACTTGGG
AAGCAAGTCGATCGCTACTCGGCAGCGAAGGACGAAGGCAGGTCGATCTA
CCCGACTGATCTCGGACCCCATCGAAGAAGAAGCTGGAGACAGCGGCGAT
GGCGGGCGTGCTCTACCGCCCATTTCATCCATTCCCCCCTCGTTACCCCA
CCTAGGCGGACCAGGCAATGCGTTTTCACGAAAGCCGCGAACGAGATTCG
CACCGCTAGTGCAATGATTGCCGAGATAAACCGCTGCAACGTCCTCGCGA
CGATCGTCAAGGACCACAACCACGCTACGCGCCGCAGCGGCCAAAAGCGT
CGGCAGAAGCAGCTTCTTGGCCGGATGAACTCTGCCGCAACTTCCGTCCC
TCCCTCGACCGCCACCCATGCTCATGGGGAATCGGGATCGTCAAAATCTT
ATCCGGAGGAAAATAATGGGTCGAGAGCACGGGGGGAGTCGAAGGAACAT
CGAGCTAGACAGGAAAAACAAAGCTCGAAGGATACGCGAGGTCCAAGAAA
CGAAATTCTCGTACCGTTGGCGGTGCCTCCACCACCCCTTCTCCTTTCGA
CAAAGATGGCGAAAGCCCCTACGTCCGGGAGAATGGTATCAACGAGCTTT
GATCCGGCCTCCAAAGCTGATGTTGCTGGTGCTGCTTCTGCTTCTGCCCA
CAACGATGCCTCGTGCGACCGTCGAGCAGGAAATAAATCGTCTGCTCCCC
AAAACGAAGGTGTCTCACACCTGCCGTCTTCCTTCGAGGGCGTTCGATCG
CAGATACCTCTTGGCAGTCAGGGGCGAGGCACTTCAGCGCTCCTTGGGGC
CGGGCTTTCCATCGCACGCCGGAAAAGAGCGGGATGGCATCAGAACCCGA
GATCGATGGGGGGGGGGCGGCGCTTCGGGTTGCCTCCACTCGATGAGCGG
TACGGCGAAAGTGTGGTAGATAGCTGGGTCCAATCGCCCGTTGCGCTCAG
GCTGGAGAGGCCTAGGTGCAAGAGCGTGGACGTCGCCCATCTTGATCAAC
AGGCTCACCAGGAGTACATCGAGGGAATTTTTCGAGCGGGAGCGGCTGCG
GCGCAGCGTCGCGGGCAAAAGCGCAGAGACGGCGAAGAGCAGGGGGTGAT
GGGTGAAGAGGCATATAACAGCAGCGACTTGGGAAGCAAGTCGATCGCTA
CTCGGCAGCGAAGGACGAAGGCAGGTCGATCTACCCGACTGATCTCGGAC
CCCATCGAAGAAGAAGCTGGAGACAGCGGCGATGGCGGGCGTGCTCTACC
GCCCATTTCATCCATTCCCCCCTCGTTACCCCACCTAGGCGGACCAGGCA
CAGGAGTATTTGCTCTCGCAAGCTGCGATACTGAGCCAACCACAGGTGGT
ATGGCACACGACGGTGGCGGTCCGGTCGTCAGTGACAGGAGTCCAGATTT
TCCGCCTTGGAAAACGTCCTGCGTTTCCCGTGCCGACGATGGCAGCAGTC
AAAGGGTGAACGTTGACGAAAAGCTCAAGTCCGAGGCCCTCGGCTTCCGC
TCCGATGGCGCGCGAAAAGTATTCAAGCAGACACAGCGTTTACTGGAAGC
GTTGCGTACGCCCGCAGGGAGCTGCCAGGTCGACCCAAGGACAGGGGCTC
GCAGGGGCTGCGGGGGCGGCAACGTCGGAGGGCACTCGAGCATCGTCGTC
CACCATCACCAAAACAACTTACATCACGGGCCTGGGGCGGGGATAGGAGG
CGATAAGGCCAAGGGCGGTGGTGTTGGCGGAGGCGGGAAAGGCAATGGCA
ACGGCAACGGCATTGATACAAGTAGCACCAGTGCCGGCGCGGCATTTCTC
AACCATCTTCCGGAGAGCGATACCGCGATGTGGCGAGTGCCTCGAGGAGA
CAGGCCGGCGCGTCTAGCGGAGGTGTTCCGCTGTATCGCTGCCCCTCACA
TCGTGCGCATTGAATGCGAAATCATCCTCCACAACTCTCTAACCAGGCCT
GGCGGTGGGCGGGATGGGGACGGGGGAACAAGCGGCGGCGGCAGCTGCAC
ATGGGACGACTTTGTGTTTGCTTGGGAGCAGGAGTATTTGCTCTCGCAAG
CTGCGATACTGAGCCAACCACAGGTGGTATGGCACACGACGGTGGCGGTC
CGGTCGTCAGTGACAGGAGTCCAGATTTTCCGCCTTGGAAAACGTCCTGC
GTTTCCCGTGCCGACGATGGCAGCAGTCAAAGGGTGAACGTTGACGAAAA
GCTCAAGTCCGAGGCCCTCGGCTTCCGCTCCGATGGCGCGCGAAAAGTAT
TCAAGCAGACACAGCGTTTACTGGAAGCGTTGCGTACGCCCGCAGGGAGC
TGCCAGGTCGACCCAAGGACAGGGGCTCGCAGGGGCTGCGGGGGCGGCAA
CGTCGGAGGGCACTCGAGCATCGTCGTCCACCATCACCAAAACAACTTAC
ATCACGGGCCTGGGGCGGGGATAGGAGGCGATAAGGCCAAGGGCGGTGGT
GTTGGCGGAGGCGGGAAAGGCAATGGCAACGGCAACGGCATTGATACAAG
TAGCACCAGTGCCGGCGCGGCATTTCTCAACCATCTTCCGGAGAGCGATA
CCGCGATGTGGCGAGTGCCTCGAGGAGACAGGCCGGCGCGTCTAGCGGAG
GTGTTCCGCTGTATCGCTGCCCCTCACATCGTGCGCATTGAATGCGAAAT
CATCCTCCACAACTCTCTAACCAGGCCTGGCGGTGGGCGGGATGGGGACG
GGGGAACAAGCGGCGGCGGCAGCTGCACATGGGACGACTTTGTGTTTGCT
TGGGAGTGTTTGGCAGACGGAATTCTCGCCGGACGAGCTCTGAGCGGCTA
CTGGGAGCATGCGCACCACGACCACGGCGGGGCCAACTCTGCTCTCGCTA
GGTCGCAGCGAGCGGCGGACGATCTCCTCTCGGATGGACTGATGCGCGCG
CTACTGTCGACGAGGTGTTATCGGCCGCCGGGGTTGGACCAACTTTTCGT
TGAGTGTTTGGCAGACGGAATTCTCGCCGGACGAGCTCTGAGCGGCTACT
GGGAGCATGCGCACCACGACCACGGCGGGGCCAACTCTGCTCTCGCTAGG
TCGCAGCGAGCGGCGGACGATCTCCTCTCGGATGGACTGATGCGCGCGCT
ACTGTCGACGAGGTGTTATCGGCCGCCGGGGTTGGACCAACTTTTCGTTG
AGTGGTTGGATGAGCTCTTGGAGGTGGTAAGGGCTTACGCGAGACGGGCC
TGCTCGAGGGTTCCTTCGCAGCATGGCTTGACGGCCGGGTTGGAGTGGTT
TGAAGAGGTACGGTAGTGGTTGGATGAGCTCTTGGAGGTGGTAAGGGCTT
ACGCGAGACGGGCCTGCTCGAGGGTTCCTTCGCAGCATGGCTTGACGGCC
GGGTTGGAGTGGTTTGAAGAGGTACGGTAG back to top
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