mRNA_H-canaliculatus_F_contig12868.2390.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12868.2390.1
Unique NamemRNA_H-canaliculatus_F_contig12868.2390.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12868.2390.1 vs. uniprot
Match: D7FPC4_ECTSI (Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC4_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.280e-11
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:  358 RVR-RRRYLDLEVFCDDEDGEELRLPPVRLDMRSAARGA 471
            RVR RRRYLDL+VFCDDEDGEELRLPPVRLDMRS+ARG+
Sbjct: 1039 RVRQRRRYLDLQVFCDDEDGEELRLPPVRLDMRSSARGS 1077
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BLAST of mRNA_H-canaliculatus_F_contig12868.2390.1 vs. uniprot
Match: A0A6H5KE41_9PHAE (UBA_e1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE41_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.010e-10
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:  364 RRRRYLDLEVFCDDEDGEELRLPPVRLDMRSAARGA 471
            RR RYLDL+VFCDDEDGEELRLPPVRLDMRS+ARG+
Sbjct:  657 RRSRYLDLQVFCDDEDGEELRLPPVRLDMRSSARGS 692
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12868.2390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPC4_ECTSI4.280e-1189.74Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus ... [more]
A0A6H5KE41_9PHAE1.010e-1088.89UBA_e1_C domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12868contigH-canaliculatus_F_contig12868:72..639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue4.3e-10
Seed eggNOG ortholog2880.D7FPC4
Preferred nameINTS1
KEGG koko:K03178,ko:K13138
KEGG Pathwayko04120,ko05012,map04120,map05012
GOsGO:0000428,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010466,GO:0010467,GO:0010605,GO:0010941,GO:0010951,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0030162,GO:0030880,GO:0031123,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032039,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034474,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040007,GO:0042795,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043628,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045861,GO:0046483,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0055029,GO:0060255,GO:0060548,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:2000116,GO:2000117
EggNOG free text desc.U2 snRNA 3'-end processing
EggNOG OGsCOG0476@1,KOG2012@2759,KOG4596@1,KOG4596@2759
EC6.2.1.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size557
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.7171412-CDS-H-canaliculatus_F_contig12868:72..1351622929017.7171412-CDS-H-canaliculatus_F_contig12868:72..135Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12868 73..135 -
1696845648.8425975-CDS-H-canaliculatus_F_contig12868:72..1351696845648.8425975-CDS-H-canaliculatus_F_contig12868:72..135Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12868 73..135 -
1622929017.73003-CDS-H-canaliculatus_F_contig12868:147..6391622929017.73003-CDS-H-canaliculatus_F_contig12868:147..639Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12868 148..639 -
1696845648.861684-CDS-H-canaliculatus_F_contig12868:147..6391696845648.861684-CDS-H-canaliculatus_F_contig12868:147..639Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12868 148..639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12868.2390.1prot_H-canaliculatus_F_contig12868.2390.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12868 73..639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12868.2390.1

>prot_H-canaliculatus_F_contig12868.2390.1 ID=prot_H-canaliculatus_F_contig12868.2390.1|Name=mRNA_H-canaliculatus_F_contig12868.2390.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=185bp
WATPAAPAAEGSEAAVAAPGDAVLSGSLPEAAATTATAGASASETQAEGC
RASRPLPPAAGSGGDGDGDGADVEGEAAGDEAWAREALEGWSDGDDDSDG
GGRTGAPPRTSRAVHERTPRVRRRRYLDLEVFCDDEDGEELRLPPVRLDM
RSAARGAGAGASLHAAAAAAAAVAEAASVGARESD
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mRNA from alignment at H-canaliculatus_F_contig12868:72..639-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12868.2390.1 ID=mRNA_H-canaliculatus_F_contig12868.2390.1|Name=mRNA_H-canaliculatus_F_contig12868.2390.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=568bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12868:72..639- (Hapterophycus canaliculatus Oshoro5f female)
TGGGCCACGCCCGCCGCACCCGCGGCAGAGGGATCGGAGGCCGCCGTAGC
AGCCCCGGGCGACGCCGTCCTCTCCGGCTCCCTTCCGGAGGCAGCGGCGA
CGACAGCGACAGCGGGCGCATCGGCGTCGGAGACGCAAGCCGAAGGCTGT
CGAGCGAGCCGTCCTCTCCCTCCTGCCGCAGGCAGCGGCGGCGACGGCGA
CGGCGACGGCGCGGACGTCGAGGGAGAGGCGGCGGGGGACGAGGCGTGGG
CGCGGGAAGCCCTGGAGGGTTGGAGCGACGGCGACGACGACTCCGACGGC
GGCGGGAGGACGGGGGCCCCGCCAAGGACGAGCCGCGCCGTCCACGAACG
GACGCCGAGAGTGCGGCGCAGGCGGTACCTGGACCTCGAAGTCTTCTGCG
ATGACGAGGACGGGGAGGAGCTGAGGCTGCCCCCTGTGCGGCTCGACATG
CGGAGCGCTGCGCGCGGAGCGGGGGCGGGGGCATCCCTGCATGTTACGGC
GGAGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCAGAAGCCGCGAGTGTAG
GTGCTCGAGAAAGCGATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12868:72..639-

>mRNA_H-canaliculatus_F_contig12868.2390.1 ID=mRNA_H-canaliculatus_F_contig12868.2390.1|Name=mRNA_H-canaliculatus_F_contig12868.2390.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1110bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12868:72..639- (Hapterophycus canaliculatus Oshoro5f female)
TGGGCCACGCCCGCCGCACCCGCGGCAGAGGGATCGGAGGCCGCCGTAGC
AGCCCCGGGCGACGCCGTCCTCTCCGGCTCCCTTCCGGAGGCAGCGGCGA
CGACAGCGACAGCGGGCGCATCGGCGTCGGAGACGCAAGCCGAAGGCTGT
CGAGCGAGCCGTCCTCTCCCTCCTGCCGCAGGCAGCGGCGGCGACGGCGA
CGGCGACGGCGCGGACGTCGAGGGAGAGGCGGCGGGGGACGAGGCGTGGG
CGCGGGAAGCCCTGGAGGGTTGGAGCGACGGCGACGACGACTCCGACGGC
GGCGGGAGGACGGGGGCCCCGCCAAGGACGAGCCGCGCCGTCCACGAACG
GACGCCGAGAGTGCGGCGCAGGCGGTACCTGGACCTCGAAGTCTTCTGCG
ATGACGAGGACGGGGAGGAGCTGAGGCTGCCCCCTGTGCGGCTCGACATG
CGGAGCGCTGCGCGCGGAGCGGGGGCGGGGGCATCCCTGCATTGGGCCAC
GCCCGCCGCACCCGCGGCAGAGGGATCGGAGGCCGCCGTAGCAGCCCCGG
GCGACGCCGTCCTCTCCGGCTCCCTTCCGGAGGCAGCGGCGACGACAGCG
ACAGCGGGCGCATCGGCGTCGGAGACGCAAGCCGAAGGCTGTCGAGCGAG
CCGTCCTCTCCCTCCTGCCGCAGGCAGCGGCGGCGACGGCGACGGCGACG
GCGCGGACGTCGAGGGAGAGGCGGCGGGGGACGAGGCGTGGGCGCGGGAA
GCCCTGGAGGGTTGGAGCGACGGCGACGACGACTCCGACGGCGGCGGGAG
GACGGGGGCCCCGCCAAGGACGAGCCGCGCCGTCCACGAACGGACGCCGA
GAGTGCGGCGCAGGCGGTACCTGGACCTCGAAGTCTTCTGCGATGACGAG
GACGGGGAGGAGCTGAGGCTGCCCCCTGTGCGGCTCGACATGCGGAGCGC
TGCGCGCGGAGCGGGGGCGGGGGCATCCCTGCATGCGGCGGCGGCGGCGG
CGGCGGCGGTGGCAGAAGCCGCGAGTGTAGGTGCTCGAGAAAGCGATGCG
GCGGCGGCGGCGGCGGCGGCGGTGGCAGAAGCCGCGAGTGTAGGTGCTCG
AGAAAGCGAT
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