mRNA_H-canaliculatus_F_contig12867.2389.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12867.2389.1
Unique NamemRNA_H-canaliculatus_F_contig12867.2389.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12867.2389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12867contigH-canaliculatus_F_contig12867:1655..3070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1416
Cds size723
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12867.2389.1prot_H-canaliculatus_F_contig12867.2389.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12867 1676..2398 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.6419866-UTR-H-canaliculatus_F_contig12867:1654..16751622929017.6419866-UTR-H-canaliculatus_F_contig12867:1654..1675Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12867 1655..1675 +
1696845648.797333-UTR-H-canaliculatus_F_contig12867:1654..16751696845648.797333-UTR-H-canaliculatus_F_contig12867:1654..1675Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12867 1655..1675 +
1622929017.68217-UTR-H-canaliculatus_F_contig12867:2398..30701622929017.68217-UTR-H-canaliculatus_F_contig12867:2398..3070Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12867 2399..3070 +
1696845648.8235064-UTR-H-canaliculatus_F_contig12867:2398..30701696845648.8235064-UTR-H-canaliculatus_F_contig12867:2398..3070Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12867 2399..3070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.6566556-CDS-H-canaliculatus_F_contig12867:1675..23981622929017.6566556-CDS-H-canaliculatus_F_contig12867:1675..2398Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12867 1676..2398 +
1696845648.8116722-CDS-H-canaliculatus_F_contig12867:1675..23981696845648.8116722-CDS-H-canaliculatus_F_contig12867:1675..2398Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12867 1676..2398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12867.2389.1

>prot_H-canaliculatus_F_contig12867.2389.1 ID=prot_H-canaliculatus_F_contig12867.2389.1|Name=mRNA_H-canaliculatus_F_contig12867.2389.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=241bp
MPGLLLRMKEFRTTREAGPVGDNIPRHSLQLTEGPYCENNQQDFCGCRGG
QGGRTVISFPTSHLSSALMVSGRQDGPSYISDDSGMRLRQGHTSATAIRT
HGSSRGENKYPVRRPRAAHHAIAPRARPRLVNGVDLQRNRFIFRRIMKII
FDAELRPTNISTELAARKTNVSPKNAPTPAFSGVSPHPRANLPYFKPRWC
VMPRLAATAAQRFLLADWSTLASTRTHVPLTQQAAATLAS*
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mRNA from alignment at H-canaliculatus_F_contig12867:1655..3070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12867.2389.1 ID=mRNA_H-canaliculatus_F_contig12867.2389.1|Name=mRNA_H-canaliculatus_F_contig12867.2389.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1416bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12867:1655..3070+ (Hapterophycus canaliculatus Oshoro5f female)
CACACCACCACCGGAGGGAAAATGCCAGGCCTTCTTCTGCGGATGAAAGA
ATTCCGTACAACACGCGAAGCTGGTCCTGTAGGTGACAATATCCCTCGCC
ACTCGCTGCAACTCACGGAAGGACCCTACTGTGAAAATAATCAACAGGAT
TTTTGCGGGTGCCGGGGAGGGCAGGGTGGCCGTACGGTTATCTCATTTCC
CACATCGCATTTATCTTCTGCGCTCATGGTTTCTGGACGTCAAGATGGAC
CATCATACATTTCCGACGACAGCGGGATGCGATTGCGCCAAGGGCACACG
AGTGCTACTGCTATACGTACACACGGAAGCAGCAGAGGTGAAAACAAATA
TCCGGTACGTCGTCCGCGTGCCGCCCACCACGCAATCGCGCCGCGTGCTC
GACCACGCCTAGTCAACGGAGTTGATCTTCAGCGCAACCGCTTCATTTTC
CGCCGAATCATGAAGATCATCTTCGACGCCGAACTCCGCCCAACAAACAT
TTCAACAGAGCTCGCGGCTCGAAAGACCAACGTGTCGCCAAAAAACGCCC
CAACGCCGGCATTTTCAGGAGTATCCCCCCACCCCCGAGCCAACCTACCA
TACTTCAAACCCAGATGGTGTGTCATGCCGCGTCTCGCTGCTACAGCAGC
ACAACGCTTTCTTCTTGCTGATTGGTCTACATTGGCGTCTACACGAACCC
ACGTACCCCTCACGCAGCAAGCAGCGGCGACTCTTGCCTCGTGATTTTCG
TCATCGCTTCCAGCGCACGGCACACGGGTTCGGCCGGCAAGCTTTAACCC
TCTCCCGACCCCTTTCCACCCACGCCATCCCCGCCGAGACCCGTCGGTAA
AACCCCCCGCGTGGAGACGCCACACCGCACATCGGGAAACCAGCGGAGAT
GGCTCGTTTCGAAGCCGGCCTTCCTCAGGGAGCAGCCGCGCGATTCTCGG
CGAGGGTTTTCAGAGCCCGCAAGCAAGCTGAGCCGCGGTCGACGAAGCGC
GTGCTTAGGCCTTGCCCTTTAACCCTCTCGGTCCTCACCGCTCGGGCCAC
GTGCCTCCGTCCGACGCGAAGCCAGCCCAGACCCTCCCATCTTTCTATTG
GGTCTCCGTGCACCGAGCGTCTACGGCTCCCCTTCTCCCACCCCCGTGTG
CTTGCACTCTTCACGCGGCGTGCGCACGGCCGCCTCGTCCCCGCTCCGGA
AATCCGGAACCTCTTTTCCCGTCCGCTTCTCTCTTCTCACCCGCGACGCT
CTCCTCGTCGCCGACACAAAAATCGGTAGCGTCCCTGTCTTTTCGAACGT
TCTACAGGTTCTTCGCTTGTTCTTGGCTTACCTCGCTCTTACCATCCACA
CGTCTGCCCATCTTTTCTTGTGTCTTTCACGTTTGCCTCGAGAGGCCACC
TTCTTCAGCGCCTCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12867:1655..3070+

>mRNA_H-canaliculatus_F_contig12867.2389.1 ID=mRNA_H-canaliculatus_F_contig12867.2389.1|Name=mRNA_H-canaliculatus_F_contig12867.2389.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1446bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12867:1655..3070+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCAGGCCTTCTTCTGCGGATGAAAGAATTCCGTACAACACGCGAAGC
TGGTCCTGTAGGTGACAATATCCCTCGCCACTCGCTGCAACTCACGGAAG
GACCCTACTGTGAAAATAATCAACAGGATTTTTGCGGGTGCCGGGGAGGG
CAGGGTGGCCGTACGGTTATCTCATTTCCCACATCGCATTTATCTTCTGC
GCTCATGGTTTCTGGACGTCAAGATGGACCATCATACATTTCCGACGACA
GCGGGATGCGATTGCGCCAAGGGCACACGAGTGCTACTGCTATACGTACA
CACGGAAGCAGCAGAGGTGAAAACAAATATCCGGTACGTCGTCCGCGTGC
CGCCCACCACGCAATCGCGCCGCGTGCTCGACCACGCCTAGTCAACGGAG
TTGATCTTCAGCGCAACCGCTTCATTTTCCGCCGAATCATGAAGATCATC
TTCGACGCCGAACTCCGCCCAACAAACATTTCAACAGAGCTCGCGGCTCG
AAAGACCAACGTGTCGCCAAAAAACGCCCCAACGCCGGCATTTTCAGGAG
TATCCCCCCACCCCCGAGCCAACCTACCATACTTCAAACCCAGATGGTGT
GTCATGCCGCGTCTCGCTGCTACAGCAGCACAACGCTTTCTTCTTGCTGA
TTGGTCTACATTGGCGTCTACACGAACCCACGTACCCCTCACGCAGCAAG
CAGCGGCGACTCTTGCCTCGTGAATGCCAGGCCTTCTTCTGCGGATGAAA
GAATTCCGTACAACACGCGAAGCTGGTCCTGTAGGTGACAATATCCCTCG
CCACTCGCTGCAACTCACGGAAGGACCCTACTGTGAAAATAATCAACAGG
ATTTTTGCGGGTGCCGGGGAGGGCAGGGTGGCCGTACGGTTATCTCATTT
CCCACATCGCATTTATCTTCTGCGCTCATGGTTTCTGGACGTCAAGATGG
ACCATCATACATTTCCGACGACAGCGGGATGCGATTGCGCCAAGGGCACA
CGAGTGCTACTGCTATACGTACACACGGAAGCAGCAGAGGTGAAAACAAA
TATCCGGTACGTCGTCCGCGTGCCGCCCACCACGCAATCGCGCCGCGTGC
TCGACCACGCCTAGTCAACGGAGTTGATCTTCAGCGCAACCGCTTCATTT
TCCGCCGAATCATGAAGATCATCTTCGACGCCGAACTCCGCCCAACAAAC
ATTTCAACAGAGCTCGCGGCTCGAAAGACCAACGTGTCGCCAAAAAACGC
CCCAACGCCGGCATTTTCAGGAGTATCCCCCCACCCCCGAGCCAACCTAC
CATACTTCAAACCCAGATGGTGTGTCATGCCGCGTCTCGCTGCTACAGCA
GCACAACGCTTTCTTCTTGCTGATTGGTCTACATTGGCGTCTACACGAAC
CCACGTACCCCTCACGCAGCAAGCAGCGGCGACTCTTGCCTCGTGA
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