mRNA_H-canaliculatus_F_contig12863.2387.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12863.2387.1
Unique NamemRNA_H-canaliculatus_F_contig12863.2387.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12863.2387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12863contigH-canaliculatus_F_contig12863:2758..3372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size571
Cds size384
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12863.2387.1prot_H-canaliculatus_F_contig12863.2387.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12863 2962..3372 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.4010718-UTR-H-canaliculatus_F_contig12863:2757..28241622929017.4010718-UTR-H-canaliculatus_F_contig12863:2757..2824Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12863 2758..2824 -
1696845648.6914694-UTR-H-canaliculatus_F_contig12863:2757..28241696845648.6914694-UTR-H-canaliculatus_F_contig12863:2757..2824Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12863 2758..2824 -
1622929017.4173198-UTR-H-canaliculatus_F_contig12863:2842..29611622929017.4173198-UTR-H-canaliculatus_F_contig12863:2842..2961Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12863 2843..2961 -
1696845648.69987-UTR-H-canaliculatus_F_contig12863:2842..29611696845648.69987-UTR-H-canaliculatus_F_contig12863:2842..2961Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12863 2843..2961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.4318638-CDS-H-canaliculatus_F_contig12863:2961..30541622929017.4318638-CDS-H-canaliculatus_F_contig12863:2961..3054Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12863 2962..3054 -
1696845648.7078514-CDS-H-canaliculatus_F_contig12863:2961..30541696845648.7078514-CDS-H-canaliculatus_F_contig12863:2961..3054Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12863 2962..3054 -
1622929017.4486117-CDS-H-canaliculatus_F_contig12863:3067..32151622929017.4486117-CDS-H-canaliculatus_F_contig12863:3067..3215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12863 3068..3215 -
1696845648.716272-CDS-H-canaliculatus_F_contig12863:3067..32151696845648.716272-CDS-H-canaliculatus_F_contig12863:3067..3215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12863 3068..3215 -
1622929017.472902-CDS-H-canaliculatus_F_contig12863:3229..33721622929017.472902-CDS-H-canaliculatus_F_contig12863:3229..3372Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12863 3230..3372 -
1696845648.7254808-CDS-H-canaliculatus_F_contig12863:3229..33721696845648.7254808-CDS-H-canaliculatus_F_contig12863:3229..3372Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12863 3230..3372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12863.2387.1

>prot_H-canaliculatus_F_contig12863.2387.1 ID=prot_H-canaliculatus_F_contig12863.2387.1|Name=mRNA_H-canaliculatus_F_contig12863.2387.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=128bp
GGGGATLLPLVPCALAILTRVSARCVKIHPSRSILHLPDKFPEHKFPEGL
LKEEHGCGKQEYSRPASSGAKTAEINDGSENDVGTSIFVSIRKKHVAKVL
QSQQFTKGRQKTHSLHGTRGLLTSINT*
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mRNA from alignment at H-canaliculatus_F_contig12863:2758..3372-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12863.2387.1 ID=mRNA_H-canaliculatus_F_contig12863.2387.1|Name=mRNA_H-canaliculatus_F_contig12863.2387.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=615bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12863:2758..3372- (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGCGCGACGCTATTGCCGCTGGTTCCATGTGCCCTTGCTAT
ACTCACAAGAGTTTCTGCCCGTTGCGTGAAAATCCACCCCTCAAGGTCCA
TTCTCCACTTGCCGGACAAATTTCCAGAGCACAAATTTCCAGAGCACAAA
TTTCCAGAGGACTTTTAAAAGAAGAACACGGGTGCGGGAAACAAGAGTAC
TCGAGACCAGCCAGTTCGGGTGCAAAAACCGCAGAAATCAACGATGGCTC
CGAGAATGACGTTGGCACAAGCATTTTCGTGAGCATAAGGAAGAAGCATG
TCGCCGCAACGCTTTCAGAAGGTTCTGCAATCGCAACAGTTTACCAAGGG
ACGGCAAAAGACGCACTCTCTTCACGGCACCCGGGGGCTGCTGACATCAA
TCAACACTTAGAAGTGAGAACAAGGACTTCGCTAGGGAGAAGGTGGGGGA
AAGCCTGTCACCTCGTACCTCTGTGAGTTGCGAGTCTGTTGCGTCTACCT
GCAACGACGGCCACGAATGACAACAAAAGGGCGGGTGACTAGAAAAAGTA
CGGGTCCTTCACACCTTCTTGACGGCGTCCGGAAACTTAGCGGGGTGTGC
CGTCGCGAGCACGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12863:2758..3372-

>mRNA_H-canaliculatus_F_contig12863.2387.1 ID=mRNA_H-canaliculatus_F_contig12863.2387.1|Name=mRNA_H-canaliculatus_F_contig12863.2387.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=768bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12863:2758..3372- (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGCGCGACGCTATTGCCGCTGGTTCCATGTGCCCTTGCTAT
ACTCACAAGAGTTTCTGCCCGTTGCGTGAAAATCCACCCCTCAAGGTCCA
TTCTCCACTTGCCGGACAAATTTCCAGAGCACAAATTTCCAGAGGGGGGG
GGGGCGCGACGCTATTGCCGCTGGTTCCATGTGCCCTTGCTATACTCACA
AGAGTTTCTGCCCGTTGCGTGAAAATCCACCCCTCAAGGTCCATTCTCCA
CTTGCCGGACAAATTTCCAGAGCACAAATTTCCAGAAGGACTTTTAAAAG
AAGAACACGGGTGCGGGAAACAAGAGTACTCGAGACCAGCCAGTTCGGGT
GCAAAAACCGCAGAAATCAACGATGGCTCCGAGAATGACGTTGGCACAAG
CATTTTCGTGAGCATAAGGAAGAAGCATGTCGCCAGGACTTTTAAAAGAA
GAACACGGGTGCGGGAAACAAGAGTACTCGAGACCAGCCAGTTCGGGTGC
AAAAACCGCAGAAATCAACGATGGCTCCGAGAATGACGTTGGCACAAGCA
TTTTCGTGAGCATAAGGAAGAAGCATGTCGCCAAGGTTCTGCAATCGCAA
CAGTTTACCAAGGGACGGCAAAAGACGCACTCTCTTCACGGCACCCGGGG
GCTGCTGACATCAATCAACACTTAGAAGGTTCTGCAATCGCAACAGTTTA
CCAAGGGACGGCAAAAGACGCACTCTCTTCACGGCACCCGGGGGCTGCTG
ACATCAATCAACACTTAG
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