mRNA_H-canaliculatus_F_contig1286.2385.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1286.2385.1
Unique NamemRNA_H-canaliculatus_F_contig1286.2385.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1286.2385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1286contigH-canaliculatus_F_contig1286:9031..10610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.1490245-CDS-H-canaliculatus_F_contig1286:9032..91821622929017.1490245-CDS-H-canaliculatus_F_contig1286:9032..9182Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1286 9033..9182 -
1696845648.596772-CDS-H-canaliculatus_F_contig1286:9032..91821696845648.596772-CDS-H-canaliculatus_F_contig1286:9032..9182Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1286 9033..9182 -
1622929017.1741328-CDS-H-canaliculatus_F_contig1286:10457..106101622929017.1741328-CDS-H-canaliculatus_F_contig1286:10457..10610Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1286 10458..10610 -
1696845648.6076994-CDS-H-canaliculatus_F_contig1286:10457..106101696845648.6076994-CDS-H-canaliculatus_F_contig1286:10457..10610Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1286 10458..10610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1286.2385.1prot_H-canaliculatus_F_contig1286.2385.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1286 9033..10610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1286.2385.1

>prot_H-canaliculatus_F_contig1286.2385.1 ID=prot_H-canaliculatus_F_contig1286.2385.1|Name=mRNA_H-canaliculatus_F_contig1286.2385.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
GKGGCDRCASCGTGGGGEAGASGDFSGDRAAGGGRFGQTVEMDYHHHSAE
PQPRTTAAHSFAQGTSSVSSSGRGGRGTETCRGESTRNATSRRGSRRLDD
S
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mRNA from alignment at H-canaliculatus_F_contig1286:9031..10610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1286.2385.1 ID=mRNA_H-canaliculatus_F_contig1286.2385.1|Name=mRNA_H-canaliculatus_F_contig1286.2385.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1580bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1286:9031..10610- (Hapterophycus canaliculatus Oshoro5f female)
GGGAAAGGCGGGTGCGACCGCTGCGCTTCCTGCGGCACGGGCGGGGGAGG
GGAGGCGGGAGCGAGCGGAGACTTTTCGGGAGACAGGGCAGCGGGGGGAG
GAAGATTCGGACAGACTGTGGAAATGGATTACCATCATCATTCTGCTGAG
CCGGTGAGTGAAGACTGGCCCGACGCGGTCCTTCCTCCGGCCGTGCTCCT
TTCGGTGCAGCGAGATTGCGACACGTCCACGCGCAGGGTGGGGGGGGGGG
GCATTCGTACAAACTGAGGTGGTAGGTGTTGCCCCGTGCGGGCCGATCTC
GCCTCTACCGGCGCGTGAGGGCCCGTCCCTGCGAGCATCGATCGTCACCT
CCAGATAGGGAGACAGGAGCAGTGACGTCCGACCATTTTTCGCGCCTCAA
ATCGGGCTAGGCCGTTCCGAGCGAGCAAGGCGTTCCGCCGGGGAGGCAGG
CCCGGAGATAACTGACTCTGTTGTCGAGGCTTGGTGGCCTCGACCCCAGA
CAAGCACGATTTGGTGTCCCTTGATGCTGTCGCAAGGTTTTTGGCGTGTG
TAGAAGGGAAATTGGACCGGTCGGTTATTTGGCGGCGGCACTTCGCGCGG
TGGTTGACTTGGCGCCTGCCAGGGAGATGTCTCTCGTTCATCCCGATTAG
CGAGCGGCGGGCTCTGCTCTTCCGCGCCTGTCATCGGCTGAAGGGGAAAA
GAAGAATACGCTGCTTCCAACGAACTAAGCACCCGCGGATCCCAGCAACC
GCCCTTCATATGCTTCTAGTGGCAGACGGCCCGTCCATATTCGAGGGCGA
TTGCAATTCATCAGTGATTGATCGCGCTTGGTGTTTTTTGCTCTCTCTCT
TTCTCTCTCCTTTTTTTTGCCTCGGTGGGGATGCAGGTCTCTCTTCTCTC
TCTTCCCTCCCGCGCTGCTTTGCTCTTGGCGACGTTCGATCCCACAATCA
AATCGATCATGCTACAGCACACTTGTGCCACCTGGCTGTACATGCATATC
GTATCGACGTCCTTGGGTTGATGGCGGTGCACTTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGTGTGTGTGTACGTGT
GTGTGCATAAACGTGTGTGTGTGTATGTGTGAATGTGTACGTGCGTGCGT
GTGGCGTCTAGCGTGTGGCGTGTAGGCATCGGCATCCTGCAGCACAGGTG
CTCTTTCCCAAAGAAGACATGTCCCCCCCCCCTCCACCCTGCTGTAGTGA
TTTTAGCCAAGCCCCCCCCCCCGATCGTCCATGAAGCGGTTGCCTCGGCG
GCTGAAACCCCGCCATCCGATGGAGTTTCCACTCCCTCCGTTCCATCGAG
GCCCTGTCAAACAACCCCGCTCTCTCCGCTCACCCGCCGCATCCCACATC
TGCGTGCGCGCACGCTTTCGCCACGCAGCAACCTCGGACTACAGCAGCGC
ACAGCTTCGCCCAGGGCACGTCCAGCGTTTCCTCATCCGGTCGAGGGGGG
CGCGGGACGGAGACCTGTAGGGGCGAAAGCACCAGGAACGCTACGAGTAG
GCGAGGCTCTCGGCGACTGGACGACTCGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1286:9031..10610-

>mRNA_H-canaliculatus_F_contig1286.2385.1 ID=mRNA_H-canaliculatus_F_contig1286.2385.1|Name=mRNA_H-canaliculatus_F_contig1286.2385.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1286:9031..10610- (Hapterophycus canaliculatus Oshoro5f female)
GGGAAAGGCGGGTGCGACCGCTGCGCTTCCTGCGGCACGGGCGGGGGAGG
GGAGGCGGGAGCGAGCGGAGACTTTTCGGGAGACAGGGCAGCGGGGGGAG
GAAGATTCGGACAGACTGTGGAAATGGATTACCATCATCATTCTGCTGAG
CCGGGGAAAGGCGGGTGCGACCGCTGCGCTTCCTGCGGCACGGGCGGGGG
AGGGGAGGCGGGAGCGAGCGGAGACTTTTCGGGAGACAGGGCAGCGGGGG
GAGGAAGATTCGGACAGACTGTGGAAATGGATTACCATCATCATTCTGCT
GAGCCGCAACCTCGGACTACAGCAGCGCACAGCTTCGCCCAGGGCACGTC
CAGCGTTTCCTCATCCGGTCGAGGGGGGCGCGGGACGGAGACCTGTAGGG
GCGAAAGCACCAGGAACGCTACGAGTAGGCGAGGCTCTCGGCGACTGGAC
GACTCGCAACCTCGGACTACAGCAGCGCACAGCTTCGCCCAGGGCACGTC
CAGCGTTTCCTCATCCGGTCGAGGGGGGCGCGGGACGGAGACCTGTAGGG
GCGAAAGCACCAGGAACGCTACGAGTAGGCGAGGCTCTCGGCGACTGGAC
GACTCG
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