mRNA_H-canaliculatus_F_contig12857.2384.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12857.2384.1
Unique NamemRNA_H-canaliculatus_F_contig12857.2384.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12857.2384.1 vs. uniprot
Match: D8LQA2_ECTSI (Cationic amino acid transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA2_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 6.520e-35
Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:    1 QVVAIGELVSLPVVVLVSFLVQPRLLFVLANDGLLPKPLAETDARGVLRKATLLSGGAMVLVAAAVPFAGLDDLVSAGVLLCFAVTNSCAIVVRR 285
            Q+VA+GELVSLPVVVL SFLVQPRLLFVLA+DGLLPK LA TD RGVL  AT  +GG MV +A   PFA LDDLVSAGVLLCFA+TNSCAIV+RR
Sbjct:  326 QIVAVGELVSLPVVVLASFLVQPRLLFVLASDGLLPKSLASTDERGVLTTATTAAGGVMVAIATFAPFAVLDDLVSAGVLLCFAITNSCAIVIRR 420
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BLAST of mRNA_H-canaliculatus_F_contig12857.2384.1 vs. uniprot
Match: A0A835ZA89_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA89_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.230e-24
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    1 QVVAIGELVSLPVVVLVSFLVQPRLLFVLANDGLLPKPLAETDARGVLRKATLLSGGAMVLVAAAVPFAGLDDLVSAGVLLCFAVTNSCAIVVRR 285
            +V A+GE+V+LP+VVLVSF+ QPRLL+ +A DGLLPK  AE D  G L KA L+SG A V VAA VPF  +DD++SAGVLLCF  TNS  +V+R 
Sbjct:  373 EVTAVGEIVTLPLVVLVSFIAQPRLLYAMAEDGLLPKMFAEVDRNGTLFKAGLVSGLACVAVAACVPFNLVDDMISAGVLLCFNATNSSLLVMRH 467
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BLAST of mRNA_H-canaliculatus_F_contig12857.2384.1 vs. uniprot
Match: A0A7S2EQZ4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EQZ4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.350e-21
Identity = 49/94 (52.13%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 QVVAIGELVSLPVVVLVSFLVQPRLLFVLANDGLLPKPLAETDARGVLRKATLLSGGAMVLVAAAVPFAGLDDLVSAGVLLCFAVTNSCAIVVR 282
            Q+ A GE+++LPVVVL+  + QPRL + LA DGLLPK  +E D+ G L+K T+++G  M+LVA  VPF  +DDL+SAG+L+ F +T+S  I+VR
Sbjct:   14 QIAAAGEVITLPVVVLICLMAQPRLQYALAKDGLLPKLFSEVDSTGNLKKGTIVAGSVMILVATFVPFQYIDDLISAGILVAFNMTDSAVILVR 107
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BLAST of mRNA_H-canaliculatus_F_contig12857.2384.1 vs. uniprot
Match: A0A8J9S9B2_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S9B2_PHATR)

HSP 1 Score: 95.5 bits (236), Expect = 2.680e-21
Identity = 52/94 (55.32%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 QVVAIGELVSLPVVVLVSFLVQPRLLFVLANDGLLPKPLAETDARGVLRKATLLSGGAMVLVAAAVPFAGLDDLVSAGVLLCFAVTNSCAIVVR 282
            Q+ A+GELV+LPVVVLVS + QPRL F +A+DGLLP   A+ D+ G L+  TL+SG  M  VA  +PF  L+DL+SAG+LL F++TNSC +++R
Sbjct:  277 QLTALGELVTLPVVVLVSLMAQPRLTFGMASDGLLPAIFAQVDSTGNLQGGTLVSGLVMTFVATFIPFVYLNDLISAGILLAFSMTNSCLLLLR 370
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BLAST of mRNA_H-canaliculatus_F_contig12857.2384.1 vs. uniprot
Match: A0A7S4V2K1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V2K1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.200e-20
Identity = 49/94 (52.13%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 QVVAIGELVSLPVVVLVSFLVQPRLLFVLANDGLLPKPLAETDARGVLRKATLLSGGAMVLVAAAVPFAGLDDLVSAGVLLCFAVTNSCAIVVR 282
            Q+ A GE+++LPVVVL+  + QPRL + LA DGLLPK  +E D+ G L+K T+++G  M+LVA  VPF  +DDL+SAG+L+ F +T+S  I+VR
Sbjct:  367 QIAAAGEVITLPVVVLICLMAQPRLQYALAKDGLLPKLFSEVDSTGNLKKGTIVAGSVMILVATFVPFQYIDDLISAGILVAFNMTDSAVILVR 460
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BLAST of mRNA_H-canaliculatus_F_contig12857.2384.1 vs. uniprot
Match: A0A7S4VKJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VKJ5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.310e-20
Identity = 47/89 (52.81%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:   16 GELVSLPVVVLVSFLVQPRLLFVLANDGLLPKPLAETDARGVLRKATLLSGGAMVLVAAAVPFAGLDDLVSAGVLLCFAVTNSCAIVVR 282
            GE+++LPVVVL+  + QPRL + LA DGLLPK  +E D+ G L+K T+++G  M+LVA  VPF  +DDL+SAG+L+ F +T+S  I+VR
Sbjct:   50 GEVITLPVVVLICLMAQPRLQYALAKDGLLPKLFSEVDSTGNLKKGTIVAGSVMILVATFVPFQYIDDLISAGILVAFNMTDSAVILVR 138
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BLAST of mRNA_H-canaliculatus_F_contig12857.2384.1 vs. uniprot
Match: A0A7S1YZA9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZA9_TRICV)

HSP 1 Score: 92.4 bits (228), Expect = 2.110e-20
Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:    1 QVVAIGELVSLPVVVLVSFLVQPRLLFVLANDGLLPKPLAETDARGVLRKATLLSGGAMVLVAAAVPFAGLDDLVSAGVLLCFAVTNSCAIVVRR 285
            Q+VA GE+ ++PVVVL+S + QPRLL+  A DG+LP   A  D+ G LR  TL+SG +M +VA  VPF  LDDL+S+G+L+ F VT+S  I+ RR
Sbjct:  161 QIVAAGEVFTMPVVVLISLMAQPRLLYAAAEDGVLPAAFARADSTGNLRFGTLVSGVSMTIVATFVPFGFLDDLISSGILVAFCVTDSALILTRR 255
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BLAST of mRNA_H-canaliculatus_F_contig12857.2384.1 vs. uniprot
Match: A0A7S1CXR0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXR0_CYCTE)

HSP 1 Score: 92.8 bits (229), Expect = 3.730e-20
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    1 QVVAIGELVSLPVVVLVSFLVQPRLLFVLANDGLLPKPLAETDARGVLRKATLLSGGAMVLVAAAVPFAGLDDLVSAGVLLCFAVTNSCAIVVR 282
            Q+ A GE+++LPVVVL+S L QPRLL  +A DGLLP+ L   D  G LR   L+SG  M ++A+ VPF  L+DL+SAG+L+ F++TNSC +++R
Sbjct:  174 QITAAGEIITLPVVVLISMLAQPRLLQAMALDGLLPEFLGRVDNNGNLRMGALISGVGMTIIASCVPFRYLNDLISAGILVAFSMTNSCLVLLR 267
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BLAST of mRNA_H-canaliculatus_F_contig12857.2384.1 vs. uniprot
Match: A0A7S2MV97_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MV97_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.310e-20
Identity = 48/95 (50.53%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:    1 QVVAIGELVSLPVVVLVSFLVQPRLLFVLANDGLLPKPLAETDARGVLRKATLLSGGAMVLVAAAVPFAGLDDLVSAGVLLCFAVTNSCAIVVRR 285
            Q+ A GE+ +LP+VVL+S ++QPRL + LA DGLLP    E +A G LRK T+++G  M L+A  +PF  LDD VSAG+L+ F++TNS  +++RR
Sbjct:  466 QLTAAGEVFTLPIVVLISGVLQPRLQYALARDGLLPHMFCEVNAEGNLRKGTMVAGSLMTLIATFIPFEYLDDFVSAGILVAFSITNSSLVIMRR 560
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BLAST of mRNA_H-canaliculatus_F_contig12857.2384.1 vs. uniprot
Match: A0A7S1BKB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKB5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 7.760e-20
Identity = 47/94 (50.00%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 QVVAIGELVSLPVVVLVSFLVQPRLLFVLANDGLLPKPLAETDARGVLRKATLLSGGAMVLVAAAVPFAGLDDLVSAGVLLCFAVTNSCAIVVR 282
            Q+ + GE+ +LP+VVLVS + QPRL++ LA DGL+PK  A+ DA G L   T++SG  MV +A+ VPF  LDD++SAG+L+CF++TN+  +++R
Sbjct:  412 QLTSFGEVFTLPIVVLVSLMAQPRLMYALAKDGLVPKFFAKIDASGNLMNGTVISGLLMVFIASFVPFNKLDDMISAGILICFSLTNASLVLMR 505
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12857.2384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQA2_ECTSI6.520e-3577.89Cationic amino acid transporter-like protein n=2 T... [more]
A0A835ZA89_9STRA5.230e-2461.05Amino acid permease-domain-containing protein n=1 ... [more]
A0A7S2EQZ4_9STRA2.350e-2152.13Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A8J9S9B2_PHATR2.680e-2155.32Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S4V2K1_9STRA1.200e-2052.13Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4VKJ5_9STRA1.310e-2052.81Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1YZA9_TRICV2.110e-2052.63Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1CXR0_CYCTE3.730e-2052.13Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2MV97_9STRA4.310e-2050.53Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1BKB5_9STRA7.760e-2050.00Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12857contigH-canaliculatus_F_contig12857:254..1046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue4.7e-29
Seed eggNOG ortholog2880.D8LQA2
KEGG koko:K03294
KEGG TC2.A.3.2
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016020,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
EggNOG free text desc.amino acid transport
EggNOG OGsCOG0531@1,KOG1286@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptioncationic amino acid transporter-like protein
Ec32 orthologEc-26_005560.1
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.8808303-CDS-H-canaliculatus_F_contig12857:253..3131622929016.8808303-CDS-H-canaliculatus_F_contig12857:253..313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12857 254..313 +
1696845648.5724783-CDS-H-canaliculatus_F_contig12857:253..3131696845648.5724783-CDS-H-canaliculatus_F_contig12857:253..313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12857 254..313 +
1622929016.8998148-CDS-H-canaliculatus_F_contig12857:821..10461622929016.8998148-CDS-H-canaliculatus_F_contig12857:821..1046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12857 822..1046 +
1696845648.5854113-CDS-H-canaliculatus_F_contig12857:821..10461696845648.5854113-CDS-H-canaliculatus_F_contig12857:821..1046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12857 822..1046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12857.2384.1prot_H-canaliculatus_F_contig12857.2384.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12857 254..1046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12857.2384.1

>prot_H-canaliculatus_F_contig12857.2384.1 ID=prot_H-canaliculatus_F_contig12857.2384.1|Name=mRNA_H-canaliculatus_F_contig12857.2384.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
QVVAIGELVSLPVVVLVSFLVQPRLLFVLANDGLLPKPLAETDARGVLRK
ATLLSGGAMVLVAAAVPFAGLDDLVSAGVLLCFAVTNSCAIVVRR
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mRNA from alignment at H-canaliculatus_F_contig12857:254..1046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12857.2384.1 ID=mRNA_H-canaliculatus_F_contig12857.2384.1|Name=mRNA_H-canaliculatus_F_contig12857.2384.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=793bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12857:254..1046+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTTGTGGCGATCGGAGAGCTGGTCTCCCTGCCGGTGGTCGTCCTCGT
ATCTTTCCTGGTGAGCTGCACAAGTGGTACCACACTTTCAGGCGGTCAAA
GGGGCGCCGTTGATTGGAGTTTCTTGTGGAAGAAACCGTTGGGACGGCTG
AGGTTACGTCGTCGACTTCGGCGCGTAGGGAGGGACGGTGGACGATCCCG
AATAGCGTCGTGTCGCGTGCGATGCAGAGGTCGCTGCCGAAAACAAAGTT
CAAAGAGTGGCTGAGCCCTCATTCGCTGCTGCTGGAACCTGCTCGTGGTT
GCCCGTGAGGTCTTGACTCTCTCCGTACCTAGCCACGAATTATTTTTCAC
CATACGGAACCCTGACTGTACGGTAGAATTCACCACAATCTCCCCGAGTC
GACTACACTTCGTATCAGAGGGGGCTATTCCTTTGGTGTTGTTGACTCTT
CTTCATGAAAAAGATTAGTACCGGTACAATCAAACTTGAGAAACAGAAAA
CAAGCCGACCACTGACGCCCCACGTCCTTAAATACCCCCACCCCCATCAC
GACCGCCACCGCTGCTAGGTGCAACCCCGGCTCCTGTTCGTCCTCGCGAA
CGACGGCCTCCTGCCGAAGCCGCTGGCCGAGACGGACGCGCGAGGGGTGT
TGAGGAAGGCCACCCTGCTGTCGGGCGGGGCGATGGTGTTGGTAGCGGCC
GCGGTACCGTTCGCGGGGCTGGACGACTTGGTTTCGGCGGGGGTGCTGTT
GTGCTTCGCCGTGACGAACTCTTGCGCCATCGTCGTCAGAAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12857:254..1046+

>mRNA_H-canaliculatus_F_contig12857.2384.1 ID=mRNA_H-canaliculatus_F_contig12857.2384.1|Name=mRNA_H-canaliculatus_F_contig12857.2384.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12857:254..1046+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTTGTGGCGATCGGAGAGCTGGTCTCCCTGCCGGTGGTCGTCCTCGT
ATCTTTCCTGCAGGTTGTGGCGATCGGAGAGCTGGTCTCCCTGCCGGTGG
TCGTCCTCGTATCTTTCCTGGTGCAACCCCGGCTCCTGTTCGTCCTCGCG
AACGACGGCCTCCTGCCGAAGCCGCTGGCCGAGACGGACGCGCGAGGGGT
GTTGAGGAAGGCCACCCTGCTGTCGGGCGGGGCGATGGTGTTGGTAGCGG
CCGCGGTACCGTTCGCGGGGCTGGACGACTTGGTTTCGGCGGGGGTGCTG
TTGTGCTTCGCCGTGACGAACTCTTGCGCCATCGTCGTCAGAAGGGTGCA
ACCCCGGCTCCTGTTCGTCCTCGCGAACGACGGCCTCCTGCCGAAGCCGC
TGGCCGAGACGGACGCGCGAGGGGTGTTGAGGAAGGCCACCCTGCTGTCG
GGCGGGGCGATGGTGTTGGTAGCGGCCGCGGTACCGTTCGCGGGGCTGGA
CGACTTGGTTTCGGCGGGGGTGCTGTTGTGCTTCGCCGTGACGAACTCTT
GCGCCATCGTCGTCAGAAGG
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