mRNA_H-canaliculatus_F_contig12855.2383.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12855.2383.1
Unique NamemRNA_H-canaliculatus_F_contig12855.2383.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12855.2383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12855contigH-canaliculatus_F_contig12855:1620..1924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.8268106-CDS-H-canaliculatus_F_contig12855:1619..19221622929016.8268106-CDS-H-canaliculatus_F_contig12855:1619..1922Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12855 1620..1922 +
1696845648.5614262-CDS-H-canaliculatus_F_contig12855:1619..19221696845648.5614262-CDS-H-canaliculatus_F_contig12855:1619..1922Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12855 1620..1922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12855.2383.1prot_H-canaliculatus_F_contig12855.2383.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12855 1620..1922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12855.2383.1

>prot_H-canaliculatus_F_contig12855.2383.1 ID=prot_H-canaliculatus_F_contig12855.2383.1|Name=mRNA_H-canaliculatus_F_contig12855.2383.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
DKESWCGRVDGEQQQKIVHTAFFEAMHADATAIIGIEKHGAAQYYFPHDA
QDNLPRAVPSSAFGCTGPNSPSDEYQHPNQPVHPSIPAKLCTDPLTSAPW
R
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mRNA from alignment at H-canaliculatus_F_contig12855:1620..1924+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12855.2383.1 ID=mRNA_H-canaliculatus_F_contig12855.2383.1|Name=mRNA_H-canaliculatus_F_contig12855.2383.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=305bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12855:1620..1924+ (Hapterophycus canaliculatus Oshoro5f female)
GACAAGGAGAGTTGGTGTGGGAGGGTCGACGGGGAGCAACAGCAGAAGAT
TGTGCACACGGCATTCTTCGAGGCTATGCATGCGGATGCAACAGCAATAA
TCGGGATCGAGAAGCATGGGGCGGCTCAGTACTATTTTCCGCACGATGCG
CAAGACAACCTTCCACGAGCCGTACCAAGTTCAGCCTTCGGGTGCACTGG
CCCGAACAGCCCATCCGACGAGTACCAACATCCAAACCAGCCGGTACACC
CGTCAATTCCCGCAAAGCTTTGCACTGACCCCCTCACCTCTGCACCATGG
CGTCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12855:1620..1924+

>mRNA_H-canaliculatus_F_contig12855.2383.1 ID=mRNA_H-canaliculatus_F_contig12855.2383.1|Name=mRNA_H-canaliculatus_F_contig12855.2383.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12855:1620..1924+ (Hapterophycus canaliculatus Oshoro5f female)
GACAAGGAGAGTTGGTGTGGGAGGGTCGACGGGGAGCAACAGCAGAAGAT
TGTGCACACGGCATTCTTCGAGGCTATGCATGCGGATGCAACAGCAATAA
TCGGGATCGAGAAGCATGGGGCGGCTCAGTACTATTTTCCGCACGATGCG
CAAGACAACCTTCCACGAGCCGTACCAAGTTCAGCCTTCGGGTGCACTGG
CCCGAACAGCCCATCCGACGAGTACCAACATCCAAACCAGCCGGTACACC
CGTCAATTCCCGCAAAGCTTTGCACTGACCCCCTCACCTCTGCACCATGG
CGTGACAAGGAGAGTTGGTGTGGGAGGGTCGACGGGGAGCAACAGCAGAA
GATTGTGCACACGGCATTCTTCGAGGCTATGCATGCGGATGCAACAGCAA
TAATCGGGATCGAGAAGCATGGGGCGGCTCAGTACTATTTTCCGCACGAT
GCGCAAGACAACCTTCCACGAGCCGTACCAAGTTCAGCCTTCGGGTGCAC
TGGCCCGAACAGCCCATCCGACGAGTACCAACATCCAAACCAGCCGGTAC
ACCCGTCAATTCCCGCAAAGCTTTGCACTGACCCCCTCACCTCTGCACCA
TGGCGT
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