mRNA_H-canaliculatus_F_contig12854.2382.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12854.2382.1
Unique NamemRNA_H-canaliculatus_F_contig12854.2382.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12854.2382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12854contigH-canaliculatus_F_contig12854:823..1398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size577
Cds size519
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.7822895-UTR-H-canaliculatus_F_contig12854:822..8791622929016.7822895-UTR-H-canaliculatus_F_contig12854:822..879Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12854 823..879 +
1696845648.5353148-UTR-H-canaliculatus_F_contig12854:822..8791696845648.5353148-UTR-H-canaliculatus_F_contig12854:822..879Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12854 823..879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.794487-CDS-H-canaliculatus_F_contig12854:879..13981622929016.794487-CDS-H-canaliculatus_F_contig12854:879..1398Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12854 880..1398 +
1696845648.550622-CDS-H-canaliculatus_F_contig12854:879..13981696845648.550622-CDS-H-canaliculatus_F_contig12854:879..1398Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12854 880..1398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12854.2382.1prot_H-canaliculatus_F_contig12854.2382.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12854 880..1398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12854.2382.1

>prot_H-canaliculatus_F_contig12854.2382.1 ID=prot_H-canaliculatus_F_contig12854.2382.1|Name=mRNA_H-canaliculatus_F_contig12854.2382.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=173bp
MPPRPSVPTPWLAATATTPTGGLTSEASLHPSPPTRPPSLLAPGNPRCAA
AMAVTEAPSTVTGNVEPPICPFVLELVVAATVGATERTVSSVLSSSTSSS
IAVTTTAGGGGADPCRSPATVAAAAGPLMKPVSAGFFLAGAGATVAHGDV
DAAADALLSASTIIGAPGVGLTY
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mRNA from alignment at H-canaliculatus_F_contig12854:823..1398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12854.2382.1 ID=mRNA_H-canaliculatus_F_contig12854.2382.1|Name=mRNA_H-canaliculatus_F_contig12854.2382.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=576bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12854:823..1398+ (Hapterophycus canaliculatus Oshoro5f female)
CCACCCTCCTTCCCCTCCTCCCCTCCCGCTTGACCCATCGCTGGCGTCAA
GAAGGAAATGCCGCCACGGCCGTCCGTGCCAACACCCTGGCTGGCGGCGA
CGGCTACTACACCAACGGGAGGTCTGACCTCGGAGGCATCGCTCCACCCG
AGTCCCCCGACGAGGCCCCCATCGCTGCTGGCACCGGGAAATCCACGCTG
TGCGGCCGCCATGGCGGTCACGGAGGCTCCTTCGACCGTCACCGGGAACG
TTGAACCGCCGATCTGTCCGTTCGTCCTGGAACTTGTGGTCGCCGCCACT
GTGGGTGCGACCGAGCGTACAGTGTCCTCCGTTTTGTCTTCCTCTACGTC
CTCCTCCATCGCCGTGACGACCACGGCAGGAGGAGGCGGAGCCGATCCAT
GTCGAAGCCCCGCCACTGTTGCGGCTGCCGCTGGCCCGTTGATGAAGCCA
GTTTCCGCCGGATTTTTCCTCGCGGGTGCGGGAGCTACTGTGGCCCACGG
GGACGTAGATGCCGCCGCCGATGCTTTGCTCTCTGCCTCAACAATCATCG
GCGCTCCGGGAGTCGGCCTCACATAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12854:823..1398+

>mRNA_H-canaliculatus_F_contig12854.2382.1 ID=mRNA_H-canaliculatus_F_contig12854.2382.1|Name=mRNA_H-canaliculatus_F_contig12854.2382.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1038bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12854:823..1398+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGCCACGGCCGTCCGTGCCAACACCCTGGCTGGCGGCGACGGCTAC
TACACCAACGGGAGGTCTGACCTCGGAGGCATCGCTCCACCCGAGTCCCC
CGACGAGGCCCCCATCGCTGCTGGCACCGGGAAATCCACGCTGTGCGGCC
GCCATGGCGGTCACGGAGGCTCCTTCGACCGTCACCGGGAACGTTGAACC
GCCGATCTGTCCGTTCGTCCTGGAACTTGTGGTCGCCGCCACTGTGGGTG
CGACCGAGCGTACAGTGTCCTCCGTTTTGTCTTCCTCTACGTCCTCCTCC
ATCGCCGTGACGACCACGGCAGGAGGAGGCGGAGCCGATCCATGTCGAAG
CCCCGCCACTGTTGCGGCTGCCGCTGGCCCGTTGATGAAGCCAGTTTCCG
CCGGATTTTTCCTCGCGGGTGCGGGAGCTACTGTGGCCCACGGGGACGTA
GATGCCGCCGCCGATGCTTTGCTCTCTGCCTCAACAATCATCGGCGCTCC
GGGAGTCGGCCTCACATATATGCCGCCACGGCCGTCCGTGCCAACACCCT
GGCTGGCGGCGACGGCTACTACACCAACGGGAGGTCTGACCTCGGAGGCA
TCGCTCCACCCGAGTCCCCCGACGAGGCCCCCATCGCTGCTGGCACCGGG
AAATCCACGCTGTGCGGCCGCCATGGCGGTCACGGAGGCTCCTTCGACCG
TCACCGGGAACGTTGAACCGCCGATCTGTCCGTTCGTCCTGGAACTTGTG
GTCGCCGCCACTGTGGGTGCGACCGAGCGTACAGTGTCCTCCGTTTTGTC
TTCCTCTACGTCCTCCTCCATCGCCGTGACGACCACGGCAGGAGGAGGCG
GAGCCGATCCATGTCGAAGCCCCGCCACTGTTGCGGCTGCCGCTGGCCCG
TTGATGAAGCCAGTTTCCGCCGGATTTTTCCTCGCGGGTGCGGGAGCTAC
TGTGGCCCACGGGGACGTAGATGCCGCCGCCGATGCTTTGCTCTCTGCCT
CAACAATCATCGGCGCTCCGGGAGTCGGCCTCACATAT
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