mRNA_H-canaliculatus_F_contig12851.2381.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12851.2381.1
Unique NamemRNA_H-canaliculatus_F_contig12851.2381.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12851.2381.1 vs. uniprot
Match: A0A6H5JMA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.430e-12
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:  133 WTWQEAAAAELYETATALHHS*MASAGLRSLDRVGRTRTTRREATGIVERHLLHVKGLLRWCA 321
            WT + AAAA+LYE A+ALH S + SAGLR+LDRV R RT+RREA  + ERHLL   GL RW A
Sbjct: 2542 WTRRRAAAADLYEGASALHRSWILSAGLRALDRVARARTSRREAIVVAERHLLRFYGLGRWRA 2604
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BLAST of mRNA_H-canaliculatus_F_contig12851.2381.1 vs. uniprot
Match: D7G051_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G051_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.290e-12
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:  133 WTWQEAAAAELYETATALHHS*MASAGLRSLDRVGRTRTTRREATGIVERHLLHVKGLLRWCA 321
            WT + AAAA+LYE A+ALH S + SAG+R+LDRV R RT+RREA  + ERHLL   GL RW A
Sbjct:  278 WTRRRAAAADLYEGASALHRSWVLSAGMRALDRVARARTSRREAIVVAERHLLRFYGLGRWRA 340
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12851.2381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMA0_9PHAE1.430e-1263.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G051_ECTSI2.290e-1261.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12851contigH-canaliculatus_F_contig12851:2204..3435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size325
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12851.2381.1prot_H-canaliculatus_F_contig12851.2381.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12851 2248..3435 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.6436112-UTR-H-canaliculatus_F_contig12851:2203..22471622929016.6436112-UTR-H-canaliculatus_F_contig12851:2203..2247Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12851 2204..2247 +
1696845648.48088-UTR-H-canaliculatus_F_contig12851:2203..22471696845648.48088-UTR-H-canaliculatus_F_contig12851:2203..2247Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12851 2204..2247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.661604-CDS-H-canaliculatus_F_contig12851:2247..22951622929016.661604-CDS-H-canaliculatus_F_contig12851:2247..2295Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12851 2248..2295 +
1696845648.4886107-CDS-H-canaliculatus_F_contig12851:2247..22951696845648.4886107-CDS-H-canaliculatus_F_contig12851:2247..2295Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12851 2248..2295 +
1622929016.6799316-CDS-H-canaliculatus_F_contig12851:2495..26421622929016.6799316-CDS-H-canaliculatus_F_contig12851:2495..2642Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12851 2496..2642 +
1696845648.4964044-CDS-H-canaliculatus_F_contig12851:2495..26421696845648.4964044-CDS-H-canaliculatus_F_contig12851:2495..2642Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12851 2496..2642 +
1622929016.6970513-CDS-H-canaliculatus_F_contig12851:3351..34351622929016.6970513-CDS-H-canaliculatus_F_contig12851:3351..3435Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12851 3352..3435 +
1696845648.5045855-CDS-H-canaliculatus_F_contig12851:3351..34351696845648.5045855-CDS-H-canaliculatus_F_contig12851:3351..3435Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12851 3352..3435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12851.2381.1

>prot_H-canaliculatus_F_contig12851.2381.1 ID=prot_H-canaliculatus_F_contig12851.2381.1|Name=mRNA_H-canaliculatus_F_contig12851.2381.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
MYSTYTATVPGTSSPGVVLRRTAICLAGCLDLARSCGRRALRDGHGSAPF
LNGVGWLAIPGPGGEDENDQAGGYRYRRATPAACEGAAAMVRH
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mRNA from alignment at H-canaliculatus_F_contig12851:2204..3435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12851.2381.1 ID=mRNA_H-canaliculatus_F_contig12851.2381.1|Name=mRNA_H-canaliculatus_F_contig12851.2381.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1232bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12851:2204..3435+ (Hapterophycus canaliculatus Oshoro5f female)
TGCCAGCATTCGGACGGCGGTCGTGATGAAGAGGCCAAAACCTGATGTAC
TCCACTTACACGGCTACAGTCCCAGGCACCTCATCGCCCGGAGTAAGTGG
GTCGAACAGCGCAGCGGATCAAAACTGAGCGGTAGGAACGCACAGCATGG
CATGGCAGAGCACAGCATAGTACGACACGGCACGCCACTACGCAGCGTAG
GGGAGCGCAGTGAAGCAGTGCTAGACGAAGAGCACGGAGCACGGTAATGA
TGCGATACGCCGCACGACGACTGTCCTGTCGATCTGTTGCAGGTTGTTTT
GCGCCGGACAGCTATATGTCTCGCGGGTTGCCTGGACCTGGCAAGAAGCT
GCGGCCGCCGAGCTTTACGAGACGGCCACGGCTCTGCACCATTCCTGAAT
GGCGTCGGCTGGCTTGCGATCCCTGGACCGGGTGGGGAGGTACGGCTTGC
TCCGGTATGTGTCTGGTGCTCTGCGTGAAGTCGCGTCTCTCTTCGCTGCT
CCCCTCTCTGCTGTCCTCGGGGATGGTATGGTACCGCTGATGATATTCAT
GTGGAGCTTTCTCGCTTGTTTTTGTTGTGTACCATTTTGAATTCGGTGGT
TTGGGGAGGGGGTGCAGAGACTGCTGGAAGGGTACGTGGGAAAGTGGGTA
CAAGGATAGCTCCTACTCGTGTCGAACATGCCCCAGCTTTCACACGCCAG
TCAAGGCAAGGCCGTGCTTAAGGACCTCGTCTCATTTCATCGCTTCGGGG
TGAAGCGCGTCCACAAGACACTGGTTTGCGTAGCCGTAAGTTCTGTCATG
GGAACACGTTGGACCTCCTACACGAGCCTGTCCTGACTGTGCCTGTCAAA
GCTGTTCATGTGAAAGCCGCCTGTACGTTTTCCGGGGCGGGGGTCGTCTG
GTCGCCTAGACACACTCCTGACAAGGAGAAGAAGAAGGAGGTGTTATGTT
CTAGGGGCCAGGGAAGATAAGGGAGTATTCGGTACCTCTCCCCTTTAGCC
TGCCCGCTGCAAACCTGACCACCCATGGTCTTGAACGTGGCGAACCTTAT
TTCAGCAGCTTTGTCGACATTCACCCAATGTGATCCCAAATGATGCAACG
TAACACGAGTACTCGATGGATGATGGCTGGAACAATAACCCATGGCAGGA
CGAGAACGACCAGGCGGGAGGCTACAGGTATCGTCGAGCGACACCTGCTG
CATGTGAAGGGGCTGCTGCGATGGTGCGCCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12851:2204..3435+

>mRNA_H-canaliculatus_F_contig12851.2381.1 ID=mRNA_H-canaliculatus_F_contig12851.2381.1|Name=mRNA_H-canaliculatus_F_contig12851.2381.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12851:2204..3435+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTACTCCACTTACACGGCTACAGTCCCAGGCACCTCATCGCCCGGAAT
GTACTCCACTTACACGGCTACAGTCCCAGGCACCTCATCGCCCGGAGTTG
TTTTGCGCCGGACAGCTATATGTCTCGCGGGTTGCCTGGACCTGGCAAGA
AGCTGCGGCCGCCGAGCTTTACGAGACGGCCACGGCTCTGCACCATTCCT
GAATGGCGTCGGCTGGCTTGCGATCCCTGGACCGGGTGGGGAGGTTGTTT
TGCGCCGGACAGCTATATGTCTCGCGGGTTGCCTGGACCTGGCAAGAAGC
TGCGGCCGCCGAGCTTTACGAGACGGCCACGGCTCTGCACCATTCCTGAA
TGGCGTCGGCTGGCTTGCGATCCCTGGACCGGGTGGGGAGGACGAGAACG
ACCAGGCGGGAGGCTACAGGTATCGTCGAGCGACACCTGCTGCATGTGAA
GGGGCTGCTGCGATGGTGCGCCACGACGAGAACGACCAGGCGGGAGGCTA
CAGGTATCGTCGAGCGACACCTGCTGCATGTGAAGGGGCTGCTGCGATGG
TGCGCCAC
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