mRNA_H-canaliculatus_F_contig12851.2380.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12851.2380.1
Unique NamemRNA_H-canaliculatus_F_contig12851.2380.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12851.2380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12851contigH-canaliculatus_F_contig12851:3..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size505
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.7371643-CDS-H-canaliculatus_F_contig12851:2..3351622929016.7371643-CDS-H-canaliculatus_F_contig12851:2..335Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12851 3..335 +
1696845648.5135543-CDS-H-canaliculatus_F_contig12851:2..3351696845648.5135543-CDS-H-canaliculatus_F_contig12851:2..335Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12851 3..335 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.750437-UTR-H-canaliculatus_F_contig12851:335..5061622929016.750437-UTR-H-canaliculatus_F_contig12851:335..506Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12851 336..506 +
1696845648.5230472-UTR-H-canaliculatus_F_contig12851:335..5061696845648.5230472-UTR-H-canaliculatus_F_contig12851:335..506Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12851 336..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12851.2380.1prot_H-canaliculatus_F_contig12851.2380.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12851 3..335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12851.2380.1

>prot_H-canaliculatus_F_contig12851.2380.1 ID=prot_H-canaliculatus_F_contig12851.2380.1|Name=mRNA_H-canaliculatus_F_contig12851.2380.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=111bp
VRGPSSPGEAVVVAAALVRQARLQHCGRGVPRCKSIDVVGHQQHHIQSFG
AEVPNEPCLGACACGETARAWAAIGEVDIHIERTTRPTRVAAVVLGVVAA
GCPSDDNSPS*
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mRNA from alignment at H-canaliculatus_F_contig12851:3..506+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12851.2380.1 ID=mRNA_H-canaliculatus_F_contig12851.2380.1|Name=mRNA_H-canaliculatus_F_contig12851.2380.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=504bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12851:3..506+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCGCGGCCCATCTTCGCCTGGAGAAGCAGTGGTGGTGGCGGCTGCGCT
CGTGCGCCAGGCACGGCTACAGCATTGCGGGAGAGGCGTCCCAAGGTGCA
AGTCGATCGATGTTGTAGGTCACCAGCAGCATCATATCCAAAGCTTCGGC
GCAGAGGTGCCCAACGAGCCGTGCTTAGGAGCCTGTGCTTGTGGAGAGAC
CGCGAGGGCCTGGGCGGCCATTGGCGAAGTCGACATCCACATCGAGAGGA
CGACGAGGCCGACGAGAGTGGCGGCGGTGGTGCTGGGAGTTGTTGCTGCG
GGCTGTCCTTCGGACGATAACTCTCCGAGTTGACCATCGCGATATCGTAA
CTCTCCGCGAGTTGACCATAGGACGCCATGACCGAATGATACATTTCGTG
ACTCTTGCGTCTCCCAGGCACCCTGCGGCTGCCGCGAAAATAAATTTAAC
GCTTCTAGAGGAGTGCTCCACCATCAGGGACTCCCACGTTGCGTTCTACA
ATAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12851:3..506+

>mRNA_H-canaliculatus_F_contig12851.2380.1 ID=mRNA_H-canaliculatus_F_contig12851.2380.1|Name=mRNA_H-canaliculatus_F_contig12851.2380.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12851:3..506+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCGCGGCCCATCTTCGCCTGGAGAAGCAGTGGTGGTGGCGGCTGCGCT
CGTGCGCCAGGCACGGCTACAGCATTGCGGGAGAGGCGTCCCAAGGTGCA
AGTCGATCGATGTTGTAGGTCACCAGCAGCATCATATCCAAAGCTTCGGC
GCAGAGGTGCCCAACGAGCCGTGCTTAGGAGCCTGTGCTTGTGGAGAGAC
CGCGAGGGCCTGGGCGGCCATTGGCGAAGTCGACATCCACATCGAGAGGA
CGACGAGGCCGACGAGAGTGGCGGCGGTGGTGCTGGGAGTTGTTGCTGCG
GGCTGTCCTTCGGACGATAACTCTCCGAGTTGAGTGCGCGGCCCATCTTC
GCCTGGAGAAGCAGTGGTGGTGGCGGCTGCGCTCGTGCGCCAGGCACGGC
TACAGCATTGCGGGAGAGGCGTCCCAAGGTGCAAGTCGATCGATGTTGTA
GGTCACCAGCAGCATCATATCCAAAGCTTCGGCGCAGAGGTGCCCAACGA
GCCGTGCTTAGGAGCCTGTGCTTGTGGAGAGACCGCGAGGGCCTGGGCGG
CCATTGGCGAAGTCGACATCCACATCGAGAGGACGACGAGGCCGACGAGA
GTGGCGGCGGTGGTGCTGGGAGTTGTTGCTGCGGGCTGTCCTTCGGACGA
TAACTCTCCGAGTTGA
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