mRNA_H-canaliculatus_F_contig1285.2377.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1285.2377.1
Unique NamemRNA_H-canaliculatus_F_contig1285.2377.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1285.2377.1 vs. uniprot
Match: A0A6H5K3J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J5_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 4.180e-77
Identity = 168/236 (71.19%), Postives = 170/236 (72.03%), Query Frame = 1 
Query:   10 GLGSLGSFRGFKAHEFVAHASKTNCVAIGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTEGFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVQFSPDGYILASAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEFMELFCTTAPDTCPIR 717
            G  SLGSF GFKAHEFVAHA KTNCVA+GPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSS IESLRFDPTE FLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFVT                             TDVQFSPDG+ILASAAA                            XXXXXXXXXXXXXXXXXXXXXX EFMELFC TAPDTCP R
Sbjct:    5 GPSSLGSFAGFKAHEFVAHAGKTNCVAVGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSGIESLRFDPTEEFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFVTTGSMDCQV---------------------TDVQFSPDGHILASAAADGQVKLWDLRAGKPMHTFQACSGAVRAIXXXXXXXXXXXXXXXXXXXXXXXEFMELFCPTAPDTCPTR 219
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1285.2377.1 vs. uniprot
Match: D8LQ17_ECTSI (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ17_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 9.700e-77
Identity = 223/236 (94.49%), Postives = 225/236 (95.34%), Query Frame = 1 
Query:   10 GLGSLGSFRGFKAHEFVAHASKTNCVAIGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTEGFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVQFSPDGYILASAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEFMELFCTTAPDTCPIR 717
            G  SLGSF  FKAHEFVAHA KTNCVA+GPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTE FLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVQFSPDG+ILASAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EFMELFC TAPDTCP R
Sbjct:    5 GPSSLGSFAAFKAHEFVAHAGKTNCVAVGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTEEFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVQFSPDGHILASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFMELFCPTAPDTCPTR 240
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1285.2377.1 vs. uniprot
Match: A0A836CLK5_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK5_9STRA)

HSP 1 Score: 166 bits (419), Expect = 6.760e-44
Identity = 87/158 (55.06%), Postives = 104/158 (65.82%), Query Frame = 1 
Query:   37 GFKAHEFVAHASKTNCVAIGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTEGFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVQFSPDGYILASAA 510
            GFKAHEFVAH++K NCVAIGP  G VLATGG+DKRVNVW+IGRA+ IWSL GNSS IE + FD  E  L SGS+GGAVK +DL+ GKM R+FRGHMSNVT +  G+FD  ++                               +VQFSPDG++LAS A
Sbjct:   12 GFKAHEFVAHSTKVNCVAIGPH-GAVLATGGEDKRVNVWKIGRANHIWSLAGNSSPIECVCFDHAEENLYSGSSGGAVKQYDLTVGKMARNFRGHMSNVTALHSGAFDSAYLATGALDCVVKVWNTATKECVMAFKGHGAEVCEVQFSPDGFLLASGA 168
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1285.2377.1 vs. uniprot
Match: A0A1B6FE44_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6FE44_9HEMI)

HSP 1 Score: 102 bits (254), Expect = 3.570e-24
Identity = 46/98 (46.94%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:   40 FKAHEFVAHASKTNCVAIGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTEGFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNV 333
            +K  EF AH++  NC+A+G +SG+VL TGGDDK+VN+W IG+ + I SL G+ + +E++RF+ TE  + +GS+GG +K++DL A K+ R   GH S +
Sbjct:    9 WKVQEFKAHSANVNCLALGQKSGRVLVTGGDDKKVNLWAIGKNNCIMSLNGHITPVETVRFNHTEELVAAGSSGGVLKIWDLEATKIMRTLTGHRSGL 106
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1285.2377.1 vs. uniprot
Match: A0A482STH4_9ARCH (Katanin_con80 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STH4_9ARCH)

HSP 1 Score: 109 bits (272), Expect = 1.700e-23
Identity = 50/100 (50.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:   43 KAHEFVAHASKTNCVAIGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTEGFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVI 342
            +  EFVAH+++ NC+A+G +S QVLATGG+D +VN+WR+G  S+IW+L  N S IE L FD  E  +VSG+  G++K+FDL+ GK+ R+   H  NVT +
Sbjct:   11 RVQEFVAHSTQVNCLALGSKSSQVLATGGEDAKVNIWRVGSVSNIWTLGQNKSPIECLCFDADELCVVSGAMNGSLKVFDLNEGKLARNLGSHQVNVTSV 110
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1285.2377.1 vs. uniprot
Match: F0YMU1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMU1_AURAN)

HSP 1 Score: 103 bits (258), Expect = 3.120e-23
Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:   43 KAHEFVAHASKTNCVAIGPRSGQVLATGGDDKRVNVWRIGR----ASSIWSLTGNSSAIESLRFDPTEGFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNV 333
            K HE+VA  +   CVA+GPRS QVLA+GG+DKR NVWR+      A ++WSL GNSS I  L FD  E  LVSG+ GG+V+L+DL+ G+  R   GH + V
Sbjct:    5 KLHEWVASPAVVTCVALGPRSHQVLASGGEDKRANVWRLRPGDPGAQNVWSLGGNSSPISCLCFDDAENTLVSGAQGGSVRLYDLTEGRCARALNGHRNEV 105
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1285.2377.1 vs. uniprot
Match: A0A3B4BK80_9GOBI (Katanin p80 (WD repeat containing) subunit B 1 n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4BK80_9GOBI)

HSP 1 Score: 102 bits (253), Expect = 1.320e-22
Identity = 54/153 (35.29%), Postives = 84/153 (54.90%), Query Frame = 1 
Query:   52 EFVAHASKTNCVAIGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTEGFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVQFSPDGYILASAA 510
            EF AH S+ +C+++G  SG++LATGG+D RVN+W + +A+ I SLTG+ S +E L+ + +E  +V+GS  G++K++DL A K+ R   GH +N+T + C      F+                                + FSPDG  LASA+
Sbjct:   14 EFEAHTSRVSCLSLGKSSGRLLATGGEDCRVNIWAVSKANCIMSLTGSKSPVECLQLNASEEQVVAGSQSGSIKIWDLEAAKL-RTLMGHKANITSLGCHPLSENFLASSSMDTNIKLWDVRRKGYILRYQGHTDAVRSLAFSPDGKWLASAS 165
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1285.2377.1 vs. uniprot
Match: A0A7S2CHB8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2CHB8_9DINO)

HSP 1 Score: 98.6 bits (244), Expect = 4.080e-22
Identity = 46/106 (43.40%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:   28 SFRGFKAHEFVAHASKTNCVAIGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTEGFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVID 345
            S R +K  E+ AHA  T C  +G +SGQVLATGG+D+RVN+W++G+++++ SLTG++S +E L FD  E  LV G AGG++++++L   KM     GH +  + ++
Sbjct:   41 SKRVWKLQEYTAHAGCTRCARLGEKSGQVLATGGEDRRVNIWKVGKSNAMMSLTGHNSTVECLVFDKQEEVLVVGCAGGSMQVWNLEYRKMAGTLTGHRTGCSSVE 146
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1285.2377.1 vs. uniprot
Match: UPI000719CBEA (katanin p80 WD40 repeat-containing subunit B1-like isoform X1 n=7 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719CBEA)

HSP 1 Score: 104 bits (259), Expect = 8.950e-22
Identity = 47/112 (41.96%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:   25 GSFRGFKAHEFVAHASKTNCVAIGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTE-GFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSF 357
            G+ R +K  E+VAHA   NC+A+G +SG+V+ +GGDDK+VN+W +G+ + I SL+G+++ +E++RF  T+   +++GS  GA+K++DL A K+ R   GH +N+  +D   F
Sbjct:    7 GTKRAWKLQEYVAHAGNVNCLALGHKSGRVIVSGGDDKKVNLWLVGKPTCIMSLSGHTTPVEAVRFGGTDDSMVIAGSMSGALKIWDLEAAKIVRTLTGHKANIRSLDFHPF 118
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1285.2377.1 vs. uniprot
Match: A0A7R9CXC1_TIMCR (Hypothetical protein n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9CXC1_TIMCR)

HSP 1 Score: 101 bits (252), Expect = 6.100e-21
Identity = 46/102 (45.10%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:   40 FKAHEFVAHASKTNCVAIGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTEGFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVID 345
            F   +FVAH S  NC+A+G +SG+VL TGGDDK+VN+W +G+ + I SL+G+ + +E ++F  TE  + +GS  GA+K++DL A K+ R   GH +++  ID
Sbjct:  280 FGQEDFVAHGSNVNCLALGHKSGRVLVTGGDDKKVNLWAVGKHNCIMSLSGHITPVECVKFGHTEEHVCAGSQAGALKIWDLEAAKIVRTLTGHKASIRSID 381
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1285.2377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3J5_9PHAE4.180e-7771.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ17_ECTSI9.700e-7794.49Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
A0A836CLK5_9STRA6.760e-4455.06WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A1B6FE44_9HEMI3.570e-2446.94Uncharacterized protein (Fragment) n=2 Tax=Cicadel... [more]
A0A482STH4_9ARCH1.700e-2350.00Katanin_con80 domain-containing protein n=1 Tax=ar... [more]
F0YMU1_AURAN3.120e-2352.48Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A3B4BK80_9GOBI1.320e-2235.29Katanin p80 (WD repeat containing) subunit B 1 n=1... [more]
A0A7S2CHB8_9DINO4.080e-2243.40Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
UPI000719CBEA8.950e-2241.96katanin p80 WD40 repeat-containing subunit B1-like... [more]
A0A7R9CXC1_TIMCR6.100e-2145.10Hypothetical protein n=1 Tax=Timema cristinae TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1285contigH-canaliculatus_F_contig1285:23100..25614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score261.9
Seed ortholog evalue3e-67
Seed eggNOG ortholog2880.D8LQ17
Preferred nameKATNB1
KEGG koko:K18643
GOsGO:0000151,GO:0000226,GO:0000922,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005886,GO:0006605,GO:0006810,GO:0006886,GO:0006996,GO:0007010,GO:0007017,GO:0007026,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008352,GO:0009987,GO:0010638,GO:0010639,GO:0010720,GO:0010941,GO:0010942,GO:0010975,GO:0010976,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0016020,GO:0016043,GO:0022008,GO:0030154,GO:0030424,GO:0030426,GO:0030427,GO:0030496,GO:0030901,GO:0031110,GO:0031111,GO:0031112,GO:0031114,GO:0031117,GO:0031344,GO:0031346,GO:0031461,GO:0032501,GO:0032502,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033267,GO:0034613,GO:0036477,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043243,GO:0043244,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044877,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046907,GO:0046982,GO:0046983,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051013,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051493,GO:0051494,GO:0051495,GO:0051641,GO:0051649,GO:0051960,GO:0051962,GO:0060284,GO:0060322,GO:0065007,GO:0070507,GO:0070727,GO:0070840,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080008,GO:0097458,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120035,GO:0120038,GO:0150034,GO:1901879,GO:1901880,GO:1901881,GO:1902494,GO:1902903,GO:1902904,GO:1902905,GO:1990234,GO:2000026
EggNOG free text desc.microtubule severing
EggNOG OGsKOG0267@1,KOG0267@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size753
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1285.2377.1prot_H-canaliculatus_F_contig1285.2377.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1285 23100..25614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929016.2234108-CDS-H-canaliculatus_F_contig1285:23099..232371622929016.2234108-CDS-H-canaliculatus_F_contig1285:23099..23237Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1285 23100..23237 +
1696845648.2964196-CDS-H-canaliculatus_F_contig1285:23099..232371696845648.2964196-CDS-H-canaliculatus_F_contig1285:23099..23237Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1285 23100..23237 +
1622929016.2426703-CDS-H-canaliculatus_F_contig1285:24001..242591622929016.2426703-CDS-H-canaliculatus_F_contig1285:24001..24259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1285 24002..24259 +
1696845648.3068936-CDS-H-canaliculatus_F_contig1285:24001..242591696845648.3068936-CDS-H-canaliculatus_F_contig1285:24001..24259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1285 24002..24259 +
1622929016.2575285-CDS-H-canaliculatus_F_contig1285:24531..245941622929016.2575285-CDS-H-canaliculatus_F_contig1285:24531..24594Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1285 24532..24594 +
1696845648.3155313-CDS-H-canaliculatus_F_contig1285:24531..245941696845648.3155313-CDS-H-canaliculatus_F_contig1285:24531..24594Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1285 24532..24594 +
1622929016.273967-CDS-H-canaliculatus_F_contig1285:24868..249791622929016.273967-CDS-H-canaliculatus_F_contig1285:24868..24979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1285 24869..24979 +
1696845648.330875-CDS-H-canaliculatus_F_contig1285:24868..249791696845648.330875-CDS-H-canaliculatus_F_contig1285:24868..24979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1285 24869..24979 +
1622929016.2848656-CDS-H-canaliculatus_F_contig1285:25431..256141622929016.2848656-CDS-H-canaliculatus_F_contig1285:25431..25614Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1285 25432..25614 +
1696845648.3388104-CDS-H-canaliculatus_F_contig1285:25431..256141696845648.3388104-CDS-H-canaliculatus_F_contig1285:25431..25614Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1285 25432..25614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1285.2377.1

>prot_H-canaliculatus_F_contig1285.2377.1 ID=prot_H-canaliculatus_F_contig1285.2377.1|Name=mRNA_H-canaliculatus_F_contig1285.2377.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=251bp
MISGLGSLGSFRGFKAHEFVAHASKTNCVAIGPRSGQVLATGGDDKRVNV
WRIGRASSIWSLTGNSSAIESLRFDPTEGFLVSGSAGGAVKLFDLSAGKM
TRHFRGHMSNVTVIDCGSFDRRFVTTGSMDCQVKLWNVETKECAMAFKGH
NAEVTDVQFSPDGYILASAAADGQVKLWDLRAGKPMHTFQACSGPVRAIR
FNPQEFLLAAATSDRTVKLYDIEFMELFCTTAPDTCPIRQEGNVFRFPLN
*
back to top

mRNA from alignment at H-canaliculatus_F_contig1285:23100..25614+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1285.2377.1 ID=mRNA_H-canaliculatus_F_contig1285.2377.1|Name=mRNA_H-canaliculatus_F_contig1285.2377.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2515bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1285:23100..25614+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATTTCCGGCTTGGGTTCTCTCGGCTCTTTCAGGGGTTTCAAGGCGCA
TGAGTTCGTGGCCCACGCCAGCAAAACCAACTGCGTTGCCATCGGCCCGC
GGTCAGGCCAGGTCCTTGCTACCGGAGGAGATGATAAGGTGCGTGCGGGG
TACTAGACTCGTAGTTTCGTAGTTGACGAGTGATGAAGTCCGATCCACGT
CGATAGTAGCGCGCCGTAGATTGCGTTTGTTAAGACAGAAAACTCGATTT
CGTCCTAGTCGCGGGTCGCGGGGATCCTCTACTTTACAAGACTTCTTGGT
TTGGATGACGGGGGACCCTTGGGAACTGAGACGCTCACCCTGCTTTGTGC
CACGTTAACAACTTCGAACAACGCCTCACACGACGTACCTCAGGAGGCGT
TCTAACGGTGTTGTTATGTTTTCTTTAAAAATGCAACAACATGAGTGAAC
TGCAGCTGCACAGCATGGGAAGTAATAATAAACGAAGTGTGGGAAATATC
TTCTCGGTCGCGGTCTTTGTCCACGCAGTTACACCACAAATTACGTTGAT
CAAAGGAGGCCCGGCTGTGCTCTCTAGCTTGTTTGAACTTCGACATGAGG
GATGTGAGCGACTCCTGAACCCGCCGCCTCCTCAGAGGGGCTGCTGGTAT
CGTCTAGACGGCCATATCCTGCACAATCTGTTGGATAGAAAGTCCTTCGA
ACGGCAACAATGGCAGAGGACGTCGGGAGAGAACCGAGATTTCCCGTACT
GTAGTCCTACTGTAGGTGCACTGTTGTGCGTTGTGTGTGGTCAATCCACC
TGAAGGTCGCTACCATGTATTCGCCCGAAAGTTCTAGCGACACATGAAGC
ACAACTTCGGTCTCGGGTGCTGGCTATACTGCCGCAATACCCCTCGGAGC
AGAGGGTGAACGTGTGGAGAATCGGTCGAGCCAGCAGCATATGGAGCCTC
ACGGGGAACAGCTCGGCCATAGAGAGCCTGCGCTTCGACCCCACCGAGGG
GTTTCTAGTGAGCGGCAGCGCGGGGGGCGCGGTCAAGCTTTTCGACCTCA
GCGCCGGAAAGATGACTCGGCACTTCCGAGGGCACATGTCCAACGTGACC
GTCATCGACTGCGGGAGCTTCGATCGCCGGTTCGTCACCACGGGCTCGAT
GGACTGCCAGGTAGGATTCGACACGAGTAAAGGATTATCGCATAACATTC
GTGGGCGTACCAAGTATATGTTGAGCGCAACAGAGAAGTATGCGTGGACT
AGCTTAGCTCTGCTTTACATCTGCACTTGGTTCTGGCAGTGGGTGCTCGC
AACACAGTTGCTCGCCCGAAGCACCTCTGCCCCTGACACTCTGTGTCGAA
GATGAGAAGGGAAGGCGTCGTGGTCACTCGATCCGGATTATCGAAAGCAC
CGGTTCTTGGAATGCTTTTTTCCGCTTCGCAGGTAAAACTGTGGAACGTG
GAAACCAAGGAATGCGCCATGGCCTTTAAGGGACACAACGCAGAGGTAAG
CTACATGCGTCTGTTGTTTTACAGATCCAGATGTTGGGACTCATCGCGGT
GGTCTCATCCAAGCCTGGAATGTGGGAGAGTTTGCAAGTGCTCGGTCAAG
GTTCCAGTTCCCCGTGAACTCCGATTTCCTCTAGTCCTGTTGCTGAGGCC
GCTTCCACCGGTGCTTCAGCTTCATCGCTAGCATACGAAGGGTTTCACTG
CATTGAAACTATCAAAACTTTTGGGAGATCGCAGGAACTAAGCCCTCCGA
TCTTCTTTTTGGCTCACAGGTAACCGACGTTCAATTCAGCCCTGACGGTT
ACATCCTGGCCTCGGCAGCGGCGGACGGGCAAGTGAAGCTTTGGGACCTG
AGGGCTGGCAAGCCAATGCACACCTTTCAAGTGAGTGGTATAGGTAGCCT
TGATGAGCGGGGTTGCTAGGAACCTTGGCTTGATTTCTTAGCTGCAGCTT
GAAGCAGAAAATGAGCGTTTTTTTTGTGCAGCGGCTGCTGGTGAGACTGG
TGAATCTGAAGACGGCGTTTCCACGCGATTCATATGAGCTACGCCAAGGA
ATATCCTCGAAGAAGCGCTCGGAAGAAGTGTTAACTAGCTTCCCATGTCA
ACACTCCTTTTGCATCCGAGAGTGTTGAAATTGAAAGCACCCTGCGGCAA
CAATCAACCAAATTGCCAACCAACCAACGCGGTAAGCAATGAAGCGATTC
GATATCGATAAACAGGTTTTGAACGACCGCAACGCCTTTGTACGGCCAGA
AACATTCATTAATTTTATGTCGTAGAAGTCCCGTCACGTTCGTACCCCCC
CTCCCCCGTCTTTAACCACCGCCACGTTGTAGGCGTGTTCGGGGCCCGTG
CGCGCGATCCGATTCAATCCTCAGGAGTTCTTACTTGCAGCTGCTACGAG
CGACCGGACCGTGAAGCTTTACGATATCGAGTTCATGGAGTTGTTTTGTA
CCACCGCACCCGATACCTGCCCCATCAGGCAAGAAGGCAACGTCTTCAGA
TTTCCTCTCAATTAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1285:23100..25614+

>mRNA_H-canaliculatus_F_contig1285.2377.1 ID=mRNA_H-canaliculatus_F_contig1285.2377.1|Name=mRNA_H-canaliculatus_F_contig1285.2377.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1506bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1285:23100..25614+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATTTCCGGCTTGGGTTCTCTCGGCTCTTTCAGGGGTTTCAAGGCGCA
TGAGTTCGTGGCCCACGCCAGCAAAACCAACTGCGTTGCCATCGGCCCGC
GGTCAGGCCAGGTCCTTGCTACCGGAGGAGATGATAAGATGATTTCCGGC
TTGGGTTCTCTCGGCTCTTTCAGGGGTTTCAAGGCGCATGAGTTCGTGGC
CCACGCCAGCAAAACCAACTGCGTTGCCATCGGCCCGCGGTCAGGCCAGG
TCCTTGCTACCGGAGGAGATGATAAGAGGGTGAACGTGTGGAGAATCGGT
CGAGCCAGCAGCATATGGAGCCTCACGGGGAACAGCTCGGCCATAGAGAG
CCTGCGCTTCGACCCCACCGAGGGGTTTCTAGTGAGCGGCAGCGCGGGGG
GCGCGGTCAAGCTTTTCGACCTCAGCGCCGGAAAGATGACTCGGCACTTC
CGAGGGCACATGTCCAACGTGACCGTCATCGACTGCGGGAGCTTCGATCG
CCGGTTCGTCACCACGGGCTCGATGGACTGCCAGAGGGTGAACGTGTGGA
GAATCGGTCGAGCCAGCAGCATATGGAGCCTCACGGGGAACAGCTCGGCC
ATAGAGAGCCTGCGCTTCGACCCCACCGAGGGGTTTCTAGTGAGCGGCAG
CGCGGGGGGCGCGGTCAAGCTTTTCGACCTCAGCGCCGGAAAGATGACTC
GGCACTTCCGAGGGCACATGTCCAACGTGACCGTCATCGACTGCGGGAGC
TTCGATCGCCGGTTCGTCACCACGGGCTCGATGGACTGCCAGGTAAAACT
GTGGAACGTGGAAACCAAGGAATGCGCCATGGCCTTTAAGGGACACAACG
CAGAGGTAAAACTGTGGAACGTGGAAACCAAGGAATGCGCCATGGCCTTT
AAGGGACACAACGCAGAGGTAACCGACGTTCAATTCAGCCCTGACGGTTA
CATCCTGGCCTCGGCAGCGGCGGACGGGCAAGTGAAGCTTTGGGACCTGA
GGGCTGGCAAGCCAATGCACACCTTTCAAGTAACCGACGTTCAATTCAGC
CCTGACGGTTACATCCTGGCCTCGGCAGCGGCGGACGGGCAAGTGAAGCT
TTGGGACCTGAGGGCTGGCAAGCCAATGCACACCTTTCAAGCGTGTTCGG
GGCCCGTGCGCGCGATCCGATTCAATCCTCAGGAGTTCTTACTTGCAGCT
GCTACGAGCGACCGGACCGTGAAGCTTTACGATATCGAGTTCATGGAGTT
GTTTTGTACCACCGCACCCGATACCTGCCCCATCAGGCAAGAAGGCAACG
TCTTCAGATTTCCTCTCAATTAAGCGTGTTCGGGGCCCGTGCGCGCGATC
CGATTCAATCCTCAGGAGTTCTTACTTGCAGCTGCTACGAGCGACCGGAC
CGTGAAGCTTTACGATATCGAGTTCATGGAGTTGTTTTGTACCACCGCAC
CCGATACCTGCCCCATCAGGCAAGAAGGCAACGTCTTCAGATTTCCTCTC
AATTAA
back to top