mRNA_H-canaliculatus_F_contig12845.2371.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12845.2371.1 vs. uniprot
Match: A0A6H5KUF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF6_9PHAE) HSP 1 Score: 272 bits (696), Expect = 7.530e-85 Identity = 135/234 (57.69%), Postives = 170/234 (72.65%), Query Frame = 1
Query: 160 RACTVDDLVP-----QDDGDDGDDVGLSDLWDQGTLVSPPFDCTCRTLKASYHCPHLGKGGYPKWNSRLVANGTCKPKNRSEFKDEPFPPDFKILFYGNSHLRQQVVESIVCAYSEALLSRRLNIVDFVDTIARDVNVAVDPGLQCRSCVSSRKLMSDFLLENECVSEDAVEEACRCHDNEGLFLFNNGAVLHYHFAHVEDNKQVEDALRVHGTEFSDYDAVVANPGNKPNMEV 846
RACTVDDLVP +D G DG LS +WD+ ++V+PPFDCTCRTLKASY CP+LG GGYPKWN+ +G C+ + RS ++EP PP F++LFYGNSHLRQ VVE IVCAYS ++ SR L +V ++A + + VD LQCR CV+S K + LLE+EC+SE+A +EAC C DNE +F F+NGA +HYHFAH E+NK+ EDAL+ GTE+S YD VV N GN P MEV
Sbjct: 91 RACTVDDLVPPHGNYEDGGGDGG-YDLSGMWDKSSMVAPPFDCTCRTLKASYFCPNLGTGGYPKWNT----SGACERRERSALQNEPLPPAFRVLFYGNSHLRQ-VVEGIVCAYSTSIRSRCLRVVVGGGSLAPE-DALVDEDLQCRGCVNSHK-QRNMLLEHECISEEAKKEACSCDDNESVFEFDNGAAIHYHFAHKEENKRFEDALKYRGTEYSFYDVVVGNLGNDPRMEV 316
BLAST of mRNA_H-canaliculatus_F_contig12845.2371.1 vs. uniprot
Match: D7G2P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P7_ECTSI) HSP 1 Score: 253 bits (646), Expect = 6.050e-78 Identity = 124/215 (57.67%), Postives = 158/215 (73.49%), Query Frame = 1
Query: 223 LSDLWDQGTLVSPPFDCTC-------RTLKASYHCPHLGKGGYPKWNSRLVANGTCKPKNRSEFKDEPFPPDFKILFYGNSHLRQQVVESIVCAYSEALLSRRLNIVDFVDTIARDVNVAVDPGLQCRSCVSSRKLMSDFLLENECVSEDAVEEACRCHDNEGLFLFNNGAVLHYHFAHVEDNKQVEDALRVHGTEFSDYDAVVANPGNKPNMEV 846
LS +WD+ ++V+PPFDCTC R L ASY CP+LG GGYPKW++ +G C+ + RS ++EP PP F++LFYGNSHLRQ VVE IVCAYS ++ SR L +V +++A++ + VD LQCRSCV SRKL LLE+EC+SEDA EEACRC D+E +F F+NGA +HYHFAH E+NK+ EDAL+ GTE+S YDAVV N GN P MEV
Sbjct: 113 LSGMWDKSSMVAPPFDCTCSGSGRAGRALNASYFCPNLGTGGYPKWST----SGGCERRERSALQNEPLPPGFRVLFYGNSHLRQ-VVEGIVCAYSSSIRSRCLRVVVDGESLAQE-DTLVDEDLQCRSCVYSRKLRRT-LLEHECISEDAKEEACRCDDDESVFEFDNGAAIHYHFAHKEENKRFEDALQYRGTEYSSYDAVVGNLGNDPRMEV 320
BLAST of mRNA_H-canaliculatus_F_contig12845.2371.1 vs. uniprot
Match: A0A6H5KAG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE) HSP 1 Score: 154 bits (389), Expect = 4.640e-40 Identity = 92/239 (38.49%), Postives = 125/239 (52.30%), Query Frame = 1
Query: 160 RACTVDDLVPQDDGDDGDDVGLSDLWDQGT--LVSPPFDCTCRTLKASYHCPHLGKGGYPKWNSRLVANGTCKPKNRSEFKDE--PFPPDFKILFYGNSHLRQQVVESIVCAYSEALLSRRLNIVDFVDTIARDVNVAVDPG-LQCRSCVSSRKLMSDFLLENECVSEDAVEEACRCHDNEGLFLF----NNGAVLHYHFAHVEDNKQVEDALRVHGTE-FSDYDAVVANPGNKPNMEV 846
R CTVD+L+P LS W QG + PP+ C C KA Y CP+LG G YP+W R V G C+ R E PFPPD K+LFYGNSH+RQ +E+I+C + + ++S+RL V T A + PG CR+C S D LL + C+ +NGAV+H++FA+ +++K++ DAL H E S Y AV ANPGNKP++E
Sbjct: 120 RYCTVDELLPLKKSPHS---ALSSEWSQGQGGVWKPPYGCDCAFSKARYFCPNLGSGVYPRWVPRAVTRGDCRSATREEMSSRGAPFPPDSKVLFYGNSHMRQ-TLEAILCLFQKDVVSKRLRFVSA--TNANETAYLEVPGDTPCRAC-SVWTFFKDTLLNSGCIGXXXXXXXXXXXXXXXXXXXXXXXSNGAVVHFYFANHDEDKRITDALAPHHKEDLSYYTAVFANPGNKPSVEA 351
BLAST of mRNA_H-canaliculatus_F_contig12845.2371.1 vs. uniprot
Match: A0A835Z986_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z986_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.880e-20 Identity = 66/208 (31.73%), Postives = 91/208 (43.75%), Query Frame = 1
Query: 235 WDQGTLVSPP-FDCTCRTLKASYHCPHLGKGGYPKWNSRLVANGTCKPKNRSEFKDEPFPPDFKILFYGNSHLRQQVVESIVCAYSEALLSRRLNIVDFVDTIARDVNVAVDPGLQCRSCVSSRKLMSDFLLENECVSEDAVEEAC----RCHDNEGLFLFNNGAVLHYHFAHVEDNKQVEDALR-VHGTEFSDYDAVVANPGNKPNM 840
W+Q T P +DC+C KA YHC P W R + G C+ + PP ++LF GNSH+RQ +VES +CA+ + R ++ V D + CR L + C E +V C D+ F +NGA + Y F H E NK ++ + GT DYD VVAN GN P+M
Sbjct: 59 WEQRTAHQEPLYDCSCPLAKARYHCHEFNAVDGPVWVPRALVKGECRALPHNPL----VPPGARVLFAGNSHMRQ-LVESGLCAHRHEVARRNVS-----------AGVLEDISIPCRGFRLKHYL-------DGCPYEPSVLGVAPGQLECSDDRATFTLSNGATVSYVFMHREVNKTIDQFIGPTFGTSLRDYDIVVANAGNAPDM 243 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12845.2371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12845.2371.1 >prot_H-canaliculatus_F_contig12845.2371.1 ID=prot_H-canaliculatus_F_contig12845.2371.1|Name=mRNA_H-canaliculatus_F_contig12845.2371.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=283bp MSPCGVATSLLLLLLLASAVVSADADPDLEWNGKSSSGSGSGSSSRRACTback to top mRNA from alignment at H-canaliculatus_F_contig12845:560..3197+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12845.2371.1 ID=mRNA_H-canaliculatus_F_contig12845.2371.1|Name=mRNA_H-canaliculatus_F_contig12845.2371.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2638bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12845:560..3197+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12845:560..3197+ >mRNA_H-canaliculatus_F_contig12845.2371.1 ID=mRNA_H-canaliculatus_F_contig12845.2371.1|Name=mRNA_H-canaliculatus_F_contig12845.2371.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1698bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12845:560..3197+ (Hapterophycus canaliculatus Oshoro5f female)back to top |