mRNA_H-canaliculatus_F_contig1284.2369.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1284.2369.1
Unique NamemRNA_H-canaliculatus_F_contig1284.2369.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1284.2369.1 vs. uniprot
Match: A0A6H5KMS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS2_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 5.430e-50
Identity = 168/260 (64.62%), Postives = 181/260 (69.62%), Query Frame = 2 
Query:   50 RRLPNWLGFGLLFLAQKEECLGFTASSAVQXXXXXXXXXXXXXXTGNHHAQPCSQLHRRTAGXXXXXXXXXXATTKIPTGALIPPCSAATPSSRTALRATGFGPPXXXXXXXXXXXXXXXXXXXXXXXXXHRSSGSIGSGSNTAADEGGVDGGDNSFPELNDARKVEEPRGIGTLFESEDEVIRELSSEEYLDLLRDWAPIASFASVEARDLEVKEEASRILTVLRGMAEWQPRRNADYTKLGSKWSFGAPIGAIKGGQV 829
            RR+P  L FG L L +KE C+GF A+ A Q     XXXXXXXXX                  XXXXXXXXX AT      A+         +SRTAL ATGFGP XXXXXXXXXXXXXXXXXXXXXXXXX         G          D G+  FP L DA+KVEEPRGIGTLFESEDE+IRELSSEEY +LLRDWAPIASFASVEA D +VKEEA+ ILTVLRGMAEWQP+RNADYTKLGSKWSFGAPIGAIKGGQV
Sbjct:    5 RRIPVRLVFGFLLLTRKEGCVGFVANLAAQQHPQQXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXTATRTAAHRAI---------ASRTALYATGFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDG----------DAGE-PFPRLEDAKKVEEPRGIGTLFESEDELIRELSSEEYTNLLRDWAPIASFASVEAIDTKVKEEAACILTVLRGMAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQV 238
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BLAST of mRNA_H-canaliculatus_F_contig1284.2369.1 vs. uniprot
Match: A0A0G4F895_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F895_VITBC)

HSP 1 Score: 88.2 bits (217), Expect = 4.460e-16
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 2 
Query:  557 RGIGTLFESEDEVIRELSSEEYLDLLRDWAPIASFASVEARDLEVKEEASRILTVLRGMAEWQPRRNADYTKLGSKWSFGAPIGAIKGGQV 829
            + +GTLF+SEDE IREL S+E+LD +R WAP+++F  V   +   +EE +    VL+ MAEW+P R+  Y      W FGAP+GA KGGQ+
Sbjct:   67 QALGTLFKSEDEEIRELGSDEFLDTMRLWAPMSNFV-VNEGNASSREEGNATRLVLQQMAEWKPPRSGSYLGKTPDWRFGAPVGAFKGGQL 156
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BLAST of mRNA_H-canaliculatus_F_contig1284.2369.1 vs. uniprot
Match: D7FI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI60_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 7.280e-11
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 2 
Query:  731 MAEWQPRRNADYTKLGSKWSFGAPIGAIKGGQV 829
            MAEWQP+RN+DYTK+GSKWSFGAPIGAIKGGQV
Sbjct:    1 MAEWQPKRNSDYTKVGSKWSFGAPIGAIKGGQV 33
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1284.2369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KMS2_9PHAE5.430e-5064.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4F895_VITBC4.460e-1648.35Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
D7FI60_ECTSI7.280e-1190.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1284contigH-canaliculatus_F_contig1284:25752..28095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003670.1
Exons2
Model size1585
Cds size1254
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1284.2369.1prot_H-canaliculatus_F_contig1284.2369.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1284 25792..27804 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929014.3044524-UTR-H-canaliculatus_F_contig1284:25751..257911622929014.3044524-UTR-H-canaliculatus_F_contig1284:25751..25791Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1284 25752..25791 +
1696845647.5894976-UTR-H-canaliculatus_F_contig1284:25751..257911696845647.5894976-UTR-H-canaliculatus_F_contig1284:25751..25791Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1284 25752..25791 +
1622929014.6014159-UTR-H-canaliculatus_F_contig1284:27804..280951622929014.6014159-UTR-H-canaliculatus_F_contig1284:27804..28095Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1284 27805..28095 +
1696845647.61567-UTR-H-canaliculatus_F_contig1284:27804..280951696845647.61567-UTR-H-canaliculatus_F_contig1284:27804..28095Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1284 27805..28095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929014.5734804-CDS-H-canaliculatus_F_contig1284:25791..264871622929014.5734804-CDS-H-canaliculatus_F_contig1284:25791..26487Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1284 25792..26487 +
1696845647.5980222-CDS-H-canaliculatus_F_contig1284:25791..264871696845647.5980222-CDS-H-canaliculatus_F_contig1284:25791..26487Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1284 25792..26487 +
1622929014.5888612-CDS-H-canaliculatus_F_contig1284:27246..278041622929014.5888612-CDS-H-canaliculatus_F_contig1284:27246..27804Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1284 27247..27804 +
1696845647.6066916-CDS-H-canaliculatus_F_contig1284:27246..278041696845647.6066916-CDS-H-canaliculatus_F_contig1284:27246..27804Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1284 27247..27804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1284.2369.1

>prot_H-canaliculatus_F_contig1284.2369.1 ID=prot_H-canaliculatus_F_contig1284.2369.1|Name=mRNA_H-canaliculatus_F_contig1284.2369.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=418bp
MADRRLPNWLGFGLLFLAQKEECLGFTASSAVQQQRQQQQQQRQRSHTGN
HHAQPCSQLHRRTAGAAGAAAAAPAATTKIPTGALIPPCSAATPSSRTAL
RATGFGPPPPERPRPKSSPDPTAYSPNEEEEENHRSSGSIGSGSNTAADE
GGVDGGDNSFPELNDARKVEEPRGIGTLFESEDEVIRELSSEEYLDLLRD
WAPIASFASVEARDLEVKEEASRILTVLRGMAEWQPRRNADYTKLGSKWS
FGAPIGAIKGGQVSPNSSSDPRLIYFGSFRRSMPCVPLFGFNDVVWWIAA
VMQSHVQINVPIPPLISFATRVWAWFSRLLMSELHVRNEQMRRYGTSAAS
PQARRAADQPACDLCRLGGPDPMASLYHFRRSPKSHNIAINLRRKAQSTN
RIAVEAFRTRLALRWNA*
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mRNA from alignment at H-canaliculatus_F_contig1284:25752..28095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1284.2369.1 ID=mRNA_H-canaliculatus_F_contig1284.2369.1|Name=mRNA_H-canaliculatus_F_contig1284.2369.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2344bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1284:25752..28095+ (Hapterophycus canaliculatus Oshoro5f female)
CTGCTCACATCACACCGGGGTGTTCAGGCCGCTGTGCAGGATGGCGGATC
GGCGGCTTCCAAACTGGCTTGGCTTTGGCCTCCTATTCCTGGCACAAAAG
GAGGAATGCTTGGGATTCACGGCCAGTTCAGCGGTGCAGCAGCAGCGCCA
ACAGCAACAACAACAACGCCAGAGGTCGCACACGGGAAATCATCATGCGC
AGCCTTGCTCGCAGCTGCACCGGAGAACGGCAGGAGCGGCGGGCGCGGCC
GCGGCAGCACCAGCTGCAACGACGAAAATACCAACGGGAGCGCTGATACC
ACCATGTTCGGCAGCAACGCCGTCGTCGAGGACCGCCCTCCGGGCAACAG
GGTTCGGCCCACCCCCTCCGGAGCGGCCGAGACCTAAATCCTCACCGGAC
CCTACGGCCTACTCCCCGAACGAAGAGGAGGAGGAAAACCACCGCAGCAG
CGGTAGTATCGGCAGCGGTAGCAACACCGCAGCAGACGAAGGAGGCGTAG
ACGGCGGCGACAACTCTTTCCCCGAGCTGAACGACGCGAGAAAAGTGGAG
GAGCCTAGAGGGATAGGGACGCTATTCGAGTCGGAGGACGAGGTTATCCG
CGAGCTCTCCAGCGAGGAATACCTGGACCTTCTGCGGGACTGGGCGCCGA
TCGCGTCGTTCGCGTCCGTCGAGGCGCGCGACCTCGAGGTCAAGGAGGAG
GCTTCCCGCATCCTTACGGTGTTGAGAGGCATGGCGGTGAGCGATCCTGC
GTGTTCGCCGGGCAGGCTGCTGTCTGGCATTGGTTCGTCGATGGCGAAGC
CTGCCTTGCGTGGACGCTCCGCCGCTCCGCGTGTACCCTTTCCACGTTCT
TACATCGACTTCTATCCTTTGAAGTACCACCGTACTATGATAGTTGTGCG
CCGCTGAATATCTGCGAACAAGGAAGACGTCGGTGCCCCCTTGCGTAGCT
CCAAGGCCGGAGACTGCACCTGCCGCGGTATATTAAGGCGCATGGGTCAG
CTGCATGCTTGTCCTGGAGATAACTGTTCGGCGAATGCTTCCGTAGAGCA
GGCTGTCCCCAACACACCGCGGTTGCTACCGATGTGGGTTCGCCAACTGA
TCAACAGCCGTAGCCGTGAAGTCGTTGCGACTGCTGTACCGTTCCGGGGA
TGCATTCCGATGGCATGCCGAAACCTCGTCGATATCGCGGGGCGCAACGT
ATCGCCCGCCTGCTAGCAGCTTGTTGCGATTCCAAAACCCTTGGACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCACGGGCAACTATTAATAG
CTGCTGTCATCGCCGCACGCCTCCCCGAGTGCCGTCTCTCAGCGGTAGCT
TCGCTCCTCACTATCTCTCTTTCCTGTCGTTGCCACGGCAATCTGATCAC
CGTGTGCTGAACCAAGCAGCGAAGAGAGTAATCTTCTGAAACGTTTGGTT
CGTGCACGTTTGCGCCGCCTCCTTTTTGTCAATTTTCCTGAGCAGGAGTG
GCAGCCGAGACGAAACGCCGACTACACCAAGCTGGGCTCGAAGTGGTCTT
TCGGTGCACCGATCGGGGCGATCAAGGGCGGCCAGGTATCTCCCAACTCA
TCTTCCGACCCACGACTTATATATTTCGGTTCGTTTCGGCGATCGATGCC
CTGCGTTCCGCTGTTTGGTTTCAACGACGTCGTCTGGTGGATCGCGGCGG
TGATGCAATCTCACGTTCAGATCAATGTTCCGATTCCGCCTTTGATTTCG
TTCGCTACACGCGTCTGGGCGTGGTTTAGTCGTCTCTTGATGAGCGAATT
GCATGTCCGCAACGAGCAAATGCGGAGGTACGGCACCTCCGCAGCCTCAC
CACAGGCGAGGAGAGCGGCAGACCAACCTGCTTGCGATCTCTGTCGTCTA
GGCGGCCCCGACCCCATGGCTTCGTTGTACCATTTCCGAAGAAGCCCAAA
GAGTCACAATATCGCCATTAACCTGCGGCGGAAAGCACAGTCAACCAACC
GGATTGCCGTGGAAGCATTCCGTACCCGCTTGGCTTTGCGTTGGAACGCG
TAAAAAATCACACTGTCGAACGAATGAGACAGTTCCAGGAGTTTCAGCCA
GGACCCGCCTCTGTTGCGGTTACTGGAGGGTTTCATTCCCGCCTGTATCC
ACGCATGCGTTCGTGCGTCTGCTGTTCGGATGTGAATCCCGATGGTGACC
TGAAAACAACAACATAAATGAACCGGCGCAAATGCAATTTCATTGGGTGC
GCACGCAGGTGGACGCTCTGGCGTGCCTCCAGGTGAGCGAGGACGACGGT
GTGGTCGTGGAGTGGATCTGCGGCAACCCGGTGACCCTTGGCAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1284:25752..28095+

>mRNA_H-canaliculatus_F_contig1284.2369.1 ID=mRNA_H-canaliculatus_F_contig1284.2369.1|Name=mRNA_H-canaliculatus_F_contig1284.2369.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2508bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1284:25752..28095+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGATCGGCGGCTTCCAAACTGGCTTGGCTTTGGCCTCCTATTCCT
GGCACAAAAGGAGGAATGCTTGGGATTCACGGCCAGTTCAGCGGTGCAGC
AGCAGCGCCAACAGCAACAACAACAACGCCAGAGGTCGCACACGGGAAAT
CATCATGCGCAGCCTTGCTCGCAGCTGCACCGGAGAACGGCAGGAGCGGC
GGGCGCGGCCGCGGCAGCACCAGCTGCAACGACGAAAATACCAACGGGAG
CGCTGATACCACCATGTTCGGCAGCAACGCCGTCGTCGAGGACCGCCCTC
CGGGCAACAGGGTTCGGCCCACCCCCTCCGGAGCGGCCGAGACCTAAATC
CTCACCGGACCCTACGGCCTACTCCCCGAACGAAGAGGAGGAGGAAAACC
ACCGCAGCAGCGGTAGTATCGGCAGCGGTAGCAACACCGCAGCAGACGAA
GGAGGCGTAGACGGCGGCGACAACTCTTTCCCCGAGCTGAACGACGCGAG
AAAAGTGGAGGAGCCTAGAGGGATAGGGACGCTATTCGAGTCGGAGGACG
AGGTTATCCGCGAGCTCTCCAGCGAGGAATACCTGGACCTTCTGCGGGAC
TGGGCGCCGATCGCGTCGTTCGCGTCCGTCGAGGCGCGCGACCTCGAGGT
CAAGGAGGAGGCTTCCCGCATCCTTACGGTGTTGAGAGGCATGGCGATGG
CGGATCGGCGGCTTCCAAACTGGCTTGGCTTTGGCCTCCTATTCCTGGCA
CAAAAGGAGGAATGCTTGGGATTCACGGCCAGTTCAGCGGTGCAGCAGCA
GCGCCAACAGCAACAACAACAACGCCAGAGGTCGCACACGGGAAATCATC
ATGCGCAGCCTTGCTCGCAGCTGCACCGGAGAACGGCAGGAGCGGCGGGC
GCGGCCGCGGCAGCACCAGCTGCAACGACGAAAATACCAACGGGAGCGCT
GATACCACCATGTTCGGCAGCAACGCCGTCGTCGAGGACCGCCCTCCGGG
CAACAGGGTTCGGCCCACCCCCTCCGGAGCGGCCGAGACCTAAATCCTCA
CCGGACCCTACGGCCTACTCCCCGAACGAAGAGGAGGAGGAAAACCACCG
CAGCAGCGGTAGTATCGGCAGCGGTAGCAACACCGCAGCAGACGAAGGAG
GCGTAGACGGCGGCGACAACTCTTTCCCCGAGCTGAACGACGCGAGAAAA
GTGGAGGAGCCTAGAGGGATAGGGACGCTATTCGAGTCGGAGGACGAGGT
TATCCGCGAGCTCTCCAGCGAGGAATACCTGGACCTTCTGCGGGACTGGG
CGCCGATCGCGTCGTTCGCGTCCGTCGAGGCGCGCGACCTCGAGGTCAAG
GAGGAGGCTTCCCGCATCCTTACGGTGTTGAGAGGCATGGCGGAGTGGCA
GCCGAGACGAAACGCCGACTACACCAAGCTGGGCTCGAAGTGGTCTTTCG
GTGCACCGATCGGGGCGATCAAGGGCGGCCAGGTATCTCCCAACTCATCT
TCCGACCCACGACTTATATATTTCGGTTCGTTTCGGCGATCGATGCCCTG
CGTTCCGCTGTTTGGTTTCAACGACGTCGTCTGGTGGATCGCGGCGGTGA
TGCAATCTCACGTTCAGATCAATGTTCCGATTCCGCCTTTGATTTCGTTC
GCTACACGCGTCTGGGCGTGGTTTAGTCGTCTCTTGATGAGCGAATTGCA
TGTCCGCAACGAGCAAATGCGGAGGTACGGCACCTCCGCAGCCTCACCAC
AGGCGAGGAGAGCGGCAGACCAACCTGCTTGCGATCTCTGTCGTCTAGGC
GGCCCCGACCCCATGGCTTCGTTGTACCATTTCCGAAGAAGCCCAAAGAG
TCACAATATCGCCATTAACCTGCGGCGGAAAGCACAGTCAACCAACCGGA
TTGCCGTGGAAGCATTCCGTACCCGCTTGGCTTTGCGTTGGAACGCGTAA
GAGTGGCAGCCGAGACGAAACGCCGACTACACCAAGCTGGGCTCGAAGTG
GTCTTTCGGTGCACCGATCGGGGCGATCAAGGGCGGCCAGGTATCTCCCA
ACTCATCTTCCGACCCACGACTTATATATTTCGGTTCGTTTCGGCGATCG
ATGCCCTGCGTTCCGCTGTTTGGTTTCAACGACGTCGTCTGGTGGATCGC
GGCGGTGATGCAATCTCACGTTCAGATCAATGTTCCGATTCCGCCTTTGA
TTTCGTTCGCTACACGCGTCTGGGCGTGGTTTAGTCGTCTCTTGATGAGC
GAATTGCATGTCCGCAACGAGCAAATGCGGAGGTACGGCACCTCCGCAGC
CTCACCACAGGCGAGGAGAGCGGCAGACCAACCTGCTTGCGATCTCTGTC
GTCTAGGCGGCCCCGACCCCATGGCTTCGTTGTACCATTTCCGAAGAAGC
CCAAAGAGTCACAATATCGCCATTAACCTGCGGCGGAAAGCACAGTCAAC
CAACCGGATTGCCGTGGAAGCATTCCGTACCCGCTTGGCTTTGCGTTGGA
ACGCGTAA
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