mRNA_H-canaliculatus_F_contig1284.2367.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1284.2367.1
Unique NamemRNA_H-canaliculatus_F_contig1284.2367.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1284.2367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1284contigH-canaliculatus_F_contig1284:11925..12613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size591
Cds size591
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929014.2589064-CDS-H-canaliculatus_F_contig1284:11924..122191622929014.2589064-CDS-H-canaliculatus_F_contig1284:11924..12219Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1284 11925..12219 +
1696845647.571507-CDS-H-canaliculatus_F_contig1284:11924..122191696845647.571507-CDS-H-canaliculatus_F_contig1284:11924..12219Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1284 11925..12219 +
1622929014.2741523-CDS-H-canaliculatus_F_contig1284:12317..126131622929014.2741523-CDS-H-canaliculatus_F_contig1284:12317..12613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1284 12318..12613 +
1696845647.580948-CDS-H-canaliculatus_F_contig1284:12317..126131696845647.580948-CDS-H-canaliculatus_F_contig1284:12317..12613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1284 12318..12613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1284.2367.1prot_H-canaliculatus_F_contig1284.2367.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1284 11925..12613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1284.2367.1

>prot_H-canaliculatus_F_contig1284.2367.1 ID=prot_H-canaliculatus_F_contig1284.2367.1|Name=mRNA_H-canaliculatus_F_contig1284.2367.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=197bp
MEVRVLVHVPFPVRGTMSIDCLACARVCRVLVCLSTFAALCARVVYVMCT
YAHEDVCVYGLCARVWDLVCERERAQYRPASKKLEFRPRLAFLTQLYGGV
LTYFCVCIDVRVRNVECSVLRPRTCSYGVVVPSLKKAWGVCAVLLRPLLK
CQEASIHPHAHVKLPNYGAILAFRRRTTSEPVPSHTSSWVDPHSIP*
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mRNA from alignment at H-canaliculatus_F_contig1284:11925..12613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1284.2367.1 ID=mRNA_H-canaliculatus_F_contig1284.2367.1|Name=mRNA_H-canaliculatus_F_contig1284.2367.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=689bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1284:11925..12613+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGTGCGTGTGCTCGTCCACGTGCCTTTCCCTGTGCGTGGGACTAT
GTCGATTGATTGTCTTGCTTGTGCTCGCGTTTGTCGTGTGTTGGTGTGTT
TGTCCACGTTTGCTGCTTTGTGTGCCCGTGTCGTGTATGTCATGTGCACT
TATGCGCACGAAGACGTATGTGTTTATGGATTGTGTGCTCGTGTTTGGGA
TCTTGTGTGTGAGAGAGAGAGAGCACAGTACCGGCCCGCTAGTAAGAAGC
TGGAATTCCGGCCGAGGCTGGCGTTCTTAACGCAGTTATATGGTGGGTTT
TATCATCACACTCGCCACGGAGCCCCTTTTTTTCGTAAATCCGAGCCCAC
ATTTCTTATTATTGCGTTTCTTAGTAGCGGGCCGGTACTGTATGTGTTTT
GACGTATTTTTGTGTTTGTATCGATGTGCGTGTACGTAACGTGGAATGTA
GCGTTCTTCGCCCCAGGACGTGTTCCTACGGCGTTGTTGTGCCTTCCCTT
AAAAAAGCATGGGGCGTATGTGCCGTTTTGCTTCGTCCGCTCCTTAAATG
CCAGGAAGCATCAATACACCCTCACGCGCATGTGAAACTCCCGAACTATG
GCGCAATCCTCGCATTCAGACGAAGAACCACCAGCGAACCCGTTCCGTCC
CACACAAGCTCGTGGGTTGATCCGCACTCCATTCCCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1284:11925..12613+

>mRNA_H-canaliculatus_F_contig1284.2367.1 ID=mRNA_H-canaliculatus_F_contig1284.2367.1|Name=mRNA_H-canaliculatus_F_contig1284.2367.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1182bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1284:11925..12613+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGTGCGTGTGCTCGTCCACGTGCCTTTCCCTGTGCGTGGGACTAT
GTCGATTGATTGTCTTGCTTGTGCTCGCGTTTGTCGTGTGTTGGTGTGTT
TGTCCACGTTTGCTGCTTTGTGTGCCCGTGTCGTGTATGTCATGTGCACT
TATGCGCACGAAGACGTATGTGTTTATGGATTGTGTGCTCGTGTTTGGGA
TCTTGTGTGTGAGAGAGAGAGAGCACAGTACCGGCCCGCTAGTAAGAAGC
TGGAATTCCGGCCGAGGCTGGCGTTCTTAACGCAGTTATATGGTGATGGA
GGTGCGTGTGCTCGTCCACGTGCCTTTCCCTGTGCGTGGGACTATGTCGA
TTGATTGTCTTGCTTGTGCTCGCGTTTGTCGTGTGTTGGTGTGTTTGTCC
ACGTTTGCTGCTTTGTGTGCCCGTGTCGTGTATGTCATGTGCACTTATGC
GCACGAAGACGTATGTGTTTATGGATTGTGTGCTCGTGTTTGGGATCTTG
TGTGTGAGAGAGAGAGAGCACAGTACCGGCCCGCTAGTAAGAAGCTGGAA
TTCCGGCCGAGGCTGGCGTTCTTAACGCAGTTATATGGTGGTGTTTTGAC
GTATTTTTGTGTTTGTATCGATGTGCGTGTACGTAACGTGGAATGTAGCG
TTCTTCGCCCCAGGACGTGTTCCTACGGCGTTGTTGTGCCTTCCCTTAAA
AAAGCATGGGGCGTATGTGCCGTTTTGCTTCGTCCGCTCCTTAAATGCCA
GGAAGCATCAATACACCCTCACGCGCATGTGAAACTCCCGAACTATGGCG
CAATCCTCGCATTCAGACGAAGAACCACCAGCGAACCCGTTCCGTCCCAC
ACAAGCTCGTGGGTTGATCCGCACTCCATTCCCTGAGTGTTTTGACGTAT
TTTTGTGTTTGTATCGATGTGCGTGTACGTAACGTGGAATGTAGCGTTCT
TCGCCCCAGGACGTGTTCCTACGGCGTTGTTGTGCCTTCCCTTAAAAAAG
CATGGGGCGTATGTGCCGTTTTGCTTCGTCCGCTCCTTAAATGCCAGGAA
GCATCAATACACCCTCACGCGCATGTGAAACTCCCGAACTATGGCGCAAT
CCTCGCATTCAGACGAAGAACCACCAGCGAACCCGTTCCGTCCCACACAA
GCTCGTGGGTTGATCCGCACTCCATTCCCTGA
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