mRNA_H-canaliculatus_F_contig12833.2365.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12833.2365.1
Unique NamemRNA_H-canaliculatus_F_contig12833.2365.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12833.2365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12833contigH-canaliculatus_F_contig12833:3121..3445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size326
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929014.2169938-CDS-H-canaliculatus_F_contig12833:3120..34441622929014.2169938-CDS-H-canaliculatus_F_contig12833:3120..3444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12833 3121..3444 +
1696845647.5627518-CDS-H-canaliculatus_F_contig12833:3120..34441696845647.5627518-CDS-H-canaliculatus_F_contig12833:3120..3444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12833 3121..3444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12833.2365.1prot_H-canaliculatus_F_contig12833.2365.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12833 3121..3444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12833.2365.1

>prot_H-canaliculatus_F_contig12833.2365.1 ID=prot_H-canaliculatus_F_contig12833.2365.1|Name=mRNA_H-canaliculatus_F_contig12833.2365.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
LHADASHKIGLLEPVRGCFVGSLLRPLVHGLRAKAAAIRQSFGEREHLLP
NSVRVVIDIPLQIESGPCRAPTHRGVAEEICHGTELILRRHESGASNRPV
VVAAAASA
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mRNA from alignment at H-canaliculatus_F_contig12833:3121..3445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12833.2365.1 ID=mRNA_H-canaliculatus_F_contig12833.2365.1|Name=mRNA_H-canaliculatus_F_contig12833.2365.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=325bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12833:3121..3445+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCATGCCGACGCTAGCCACAAGATCGGCTTGTTGGAGCCCGTACGTGG
GTGTTTCGTGGGGTCGCTGCTTCGTCCACTTGTCCATGGGCTTCGTGCAA
AAGCAGCAGCTATCCGCCAGTCCTTTGGCGAGAGAGAGCACCTTCTCCCG
AACAGCGTCAGGGTTGTCATTGACATCCCTCTCCAGATCGAGAGCGGCCC
CTGTCGGGCTCCCACCCACCGCGGGGTGGCCGAGGAGATATGCCATGGCA
CCGAACTCATCCTCCGCCGTCACGAGAGTGGAGCTAGCAACCGACCCGTT
GTCGTCGCTGCAGCTGCCAGTGCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12833:3121..3445+

>mRNA_H-canaliculatus_F_contig12833.2365.1 ID=mRNA_H-canaliculatus_F_contig12833.2365.1|Name=mRNA_H-canaliculatus_F_contig12833.2365.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12833:3121..3445+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCATGCCGACGCTAGCCACAAGATCGGCTTGTTGGAGCCCGTACGTGG
GTGTTTCGTGGGGTCGCTGCTTCGTCCACTTGTCCATGGGCTTCGTGCAA
AAGCAGCAGCTATCCGCCAGTCCTTTGGCGAGAGAGAGCACCTTCTCCCG
AACAGCGTCAGGGTTGTCATTGACATCCCTCTCCAGATCGAGAGCGGCCC
CTGTCGGGCTCCCACCCACCGCGGGGTGGCCGAGGAGATATGCCATGGCA
CCGAACTCATCCTCCGCCGTCACGAGAGTGGAGCTAGCAACCGACCCGTT
GTCGTCGCTGCAGCTGCCAGTGCTCTCCATGCCGACGCTAGCCACAAGAT
CGGCTTGTTGGAGCCCGTACGTGGGTGTTTCGTGGGGTCGCTGCTTCGTC
CACTTGTCCATGGGCTTCGTGCAAAAGCAGCAGCTATCCGCCAGTCCTTT
GGCGAGAGAGAGCACCTTCTCCCGAACAGCGTCAGGGTTGTCATTGACAT
CCCTCTCCAGATCGAGAGCGGCCCCTGTCGGGCTCCCACCCACCGCGGGG
TGGCCGAGGAGATATGCCATGGCACCGAACTCATCCTCCGCCGTCACGAG
AGTGGAGCTAGCAACCGACCCGTTGTCGTCGCTGCAGCTGCCAGTGCT
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