mRNA_H-canaliculatus_F_contig1283.2362.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1283.2362.1 vs. uniprot
Match: A0A6H5J7G1_9PHAE (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7G1_9PHAE) HSP 1 Score: 504 bits (1299), Expect = 3.730e-167 Identity = 239/271 (88.19%), Postives = 255/271 (94.10%), Query Frame = 3
Query: 288 MSTWDGSGMSQEDFMVKDEVIALDDNDQIVGHVNKYLSHRFVPGTPRGILHRAFSVFLFDQDGKLLLQKRAASKITFPNVWTNTCCSHPLYGYEPSEVDKPEDLKNGSVPGVKNAAVRKLDHELGIAAKDVPVDSFKFLTRLHYYAADVVTHGPNAPWGEHEIDYILFMQVDSSLQMKPHPDEVDAVKWVTLEEMDAMMADKDNLWSPWFRIIVERFAREWWLNLNETLKTDKYVDTVNIHRFDPPPEFRGGAGVTGVLEEEGAKAEANDK 1100
M+TWDGSGMSQEDFMVKDEVIALD++DQIVGHVNKYLSHRFVPGTPRGILHRAFSVFLFDQDGKLLLQKRAASKITFPNVWTNTCCSHPL+GY+ SEVDKPEDLK+GSVPGVKNAAVRKL HELGIAA+DVP+DSFKFLTRLHYYAAD VTHGPNAPWGEHEIDYILF+QVDSSL M PHPDEVDAVKWV+LEEMDAMM D NLWSPWFRII+ERFAREWWLNLN+ + TDKYVDTVNIHRFDPP + RGGAGVTG++EE GAKA DK
Sbjct: 1 MATWDGSGMSQEDFMVKDEVIALDEDDQIVGHVNKYLSHRFVPGTPRGILHRAFSVFLFDQDGKLLLQKRAASKITFPNVWTNTCCSHPLFGYDRSEVDKPEDLKDGSVPGVKNAAVRKLAHELGIAAEDVPIDSFKFLTRLHYYAADAVTHGPNAPWGEHEIDYILFVQVDSSLSMTPHPDEVDAVKWVSLEEMDAMMNDNANLWSPWFRIIMERFAREWWLNLNDAINTDKYVDTVNIHRFDPPAKHRGGAGVTGLVEE-GAKAATIDK 270
BLAST of mRNA_H-canaliculatus_F_contig1283.2362.1 vs. uniprot
Match: A0A835Z055_9STRA (Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z055_9STRA) HSP 1 Score: 372 bits (955), Expect = 7.500e-115 Identity = 173/264 (65.53%), Postives = 214/264 (81.06%), Query Frame = 3
Query: 297 WDGSGMSQEDFMVKDEVIALDDNDQIVGHVNKYLSHRFVPGTPRGILHRAFSVFLFDQDGKLLLQKRAASKITFPNVWTNTCCSHPLYGYEPSEVDKPEDLKNGSVPGVKNAAVRKLDHELGIAAKDVPVDSFKFLTRLHYYAADVVTHGPNAPWGEHEIDYILFMQVDSSLQMKPHPDEVDAVKWVTLEEMDAMMADKDNLWSPWFRIIVERFARE-WWLNLNETLKTDKYVDTVNIHRFDPPPEFRGGAGVTGVLEEEGAKA 1085
WDG+ M+Q++ M+KD+VI LDD+D I+G +K+ +HRFVPG PRGILHRAFSVFLF+ +GKLLLQ+RAA KITFPNVWTNTCCSHPL G+ P+EVD+PEDL +GSV GVK AAVRKLDHELGI A+ VP+ +FKFLTRLHYYAAD+VTHG ++PWGEHEIDYILF+Q+ + MK +P+EV +WV+ EE+ AMM + LWSPWFRII ER+ WW +L TL TD +VDT I+RFDPPPE RGGAGV G+ +E+ A +
Sbjct: 7 WDGNSMTQDEMMIKDQVIVLDDDDNIIGQGSKWETHRFVPGQPRGILHRAFSVFLFNGEGKLLLQQRAAEKITFPNVWTNTCCSHPLTGFTPTEVDRPEDLADGSVMGVKRAAVRKLDHELGIPAEAVPLSAFKFLTRLHYYAADIVTHGKHSPWGEHEIDYILFIQLSAEPAMKANPEEVSDTRWVSAEELVAMMKEPGLLWSPWFRIIAERWLLPLWWKDLGATLSTDVHVDTKQINRFDPPPEHRGGAGVCGLRDEKDASS 270
BLAST of mRNA_H-canaliculatus_F_contig1283.2362.1 vs. uniprot
Match: A0A8J5XJ99_DIALT (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJ99_DIALT) HSP 1 Score: 354 bits (909), Expect = 1.930e-114 Identity = 168/258 (65.12%), Postives = 197/258 (76.36%), Query Frame = 3
Query: 291 STWDGSGMSQEDFMVKDEVIALDDNDQIVGHVNKYLSHRFVPGTPRGILHRAFSVFLFDQDGKLLLQKRAASKITFPNVWTNTCCSHPLYGYEPSEVDKPEDLKNGSVPGVKNAAVRKLDHELGIAAKDVPVDSFKFLTRLHYYAADVVTHGPNAPWGEHEIDYILFMQVDSSLQMKPHPDEVDAVKWVTLEEMDAMMADKDNL-WSPWFRIIVERFAREWWLNLNETLKTDKYVDTVNIHRFDPPPEFRGGAGVTGV 1061
S WD M+QEDFM KDE I LD +D ++GH NK +SH F P TPR +LHRAFSVFLFD G+LLLQKRAASKITFPNVWTNTCCSHPLYG+ P+EVD P D+ NGSV GVK AA+RKLDHELG+A + V ++ FKFLTRLHY+AADVVTHGP++PWGEHEIDYILF + D +++ PHP+EVD VKWV+ E+ MM L WSPWFRIIVERF WW +L+ T TDK+VD I+RFDP E GG G G
Sbjct: 9 SGWD-KNMTQEDFMFKDECILLDKDDNVIGHANKKISHVFSPETPRALLHRAFSVFLFDSQGRLLLQKRAASKITFPNVWTNTCCSHPLYGFSPTEVDTPADVANGSVMGVKRAAIRKLDHELGVAPESVDINGFKFLTRLHYWAADVVTHGPDSPWGEHEIDYILFYRADG-VKVTPHPEEVDDVKWVSHAELLEMMKPASGLLWSPWFRIIVERFLVHWWADLDATFSTDKHVDCGKIYRFDPTTEHMGGGGKAGA 264
BLAST of mRNA_H-canaliculatus_F_contig1283.2362.1 vs. uniprot
Match: B6DX88_GUITH (Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Geminigeraceae TaxID=589343 RepID=B6DX88_GUITH) HSP 1 Score: 346 bits (888), Expect = 6.100e-111 Identity = 166/257 (64.59%), Postives = 195/257 (75.88%), Query Frame = 3
Query: 291 STWDGSGMSQEDFMVKDEVIALDDNDQIVGHVNKYLSHRFVPGTPRGILHRAFSVFLFDQDGKLLLQKRAASKITFPNVWTNTCCSHPLYGYEPSEVDKPEDLKNGSVPGVKNAAVRKLDHELGIAAKDVPVDSFKFLTRLHYYAADVVTHGPNAPWGEHEIDYILFMQVDSSLQMKPHPDEVDAVKWVTLEEMDAMMADKDNL-WSPWFRIIVERFAREWWLNLNETLKTDKYVDTVNIHRFDPPPEFRGGAGVTG 1058
+ W+G+GMSQ DFM KDE + LD D+IVGH NKY SH F P PRG LHRAFSVFLF+ G+LLLQ+RA KITFP VWTNTCCSHPL+GY+PSEVD PE++K G VPGVK AAVRKL+HELGI+ VP++ FKFLTRLHY+AADVVTHGP +PWGEHEIDYILF+QV +++KP+P+EV KWVT E+ MM NL WSPWFRII +F WW +L +TL TD + D NIHRFD E GGAG G
Sbjct: 5 TVWEGAGMSQLDFMHKDECVLLDMEDKIVGHDNKYESHIFCPERPRGKLHRAFSVFLFNDKGELLLQQRAKEKITFPGVWTNTCCSHPLFGYQPSEVDGPEEVKRGDVPGVKRAAVRKLEHELGISPSQVPIEDFKFLTRLHYWAADVVTHGPASPWGEHEIDYILFIQV-KDVELKPNPEEVMDTKWVTYVELLEMMMPSSNLLWSPWFRIIATKFLGTWWKDLPKTLSTDLHFDPDNIHRFDCSEEHMGGAGGAG 260
BLAST of mRNA_H-canaliculatus_F_contig1283.2362.1 vs. uniprot
Match: A0A7S2UWS2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWS2_9STRA) HSP 1 Score: 356 bits (914), Expect = 1.120e-108 Identity = 171/277 (61.73%), Postives = 206/277 (74.37%), Query Frame = 3
Query: 276 LNLKMSTWDG--SGMSQEDFMVKDEVIALDDNDQIVGHVNKYLSHRFVPGTPRGILHRAFSVFLFDQDGKLLLQKRAASKITFPNVWTNTCCSHPLYGYEPSEVDKPEDLKNGSVPGVKNAAVRKLDHELGIAAKDVPVDSFKFLTRLHYYAADVVTHGPNAPWGEHEIDYILFMQVDSSLQMKPHPDEVDAVKWVTLEEMDAMMADKDNLWSPWFRIIVERFAREWWLNLNETLKTDKYVDTVNIHRFDPPPEFRGGAGVTGVLEEEGAKAEANDK 1100
+ LK W G G SQ DFM KDE I +D++D + GH K+ HRFVPG PRG+LHRAFSVFLF+ G+LLLQ+RA KITFP VWTNTCCSHPLYG EPSE+D PE++K GS G K AAVRKL HELGI VP++ FKFLTRLHYYA+D VTHGPN WGEHEIDYILF+Q + + +KP+P+EV+ VK+VT+ E+D M+AD D LWSPWFRII ER+ WW +L TL TDK VD IHRFDPPP+ R AGV+G+LE+ +E + K
Sbjct: 70 MELKNHAWGGVADGASQTDFMYKDECIVVDEDDVVTGHDTKWNCHRFVPGQPRGVLHRAFSVFLFNSKGQLLLQQRAKDKITFPGVWTNTCCSHPLYGQEPSELDTPEEIKAGSCMGAKRAAVRKLLHELGIDPAQVPLNKFKFLTRLHYYASDAVTHGPNTVWGEHEIDYILFIQAE--VDLKPNPEEVEDVKYVTMAELDQMLADPDLLWSPWFRIIKERWLVGWWKSLKATLTTDKAVDVQGIHRFDPPPQHRCCAGVSGILEDGSGNSEKDVK 344
BLAST of mRNA_H-canaliculatus_F_contig1283.2362.1 vs. uniprot
Match: A0A7S1TT08_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TT08_9STRA) HSP 1 Score: 355 bits (911), Expect = 1.650e-108 Identity = 173/258 (67.05%), Postives = 200/258 (77.52%), Query Frame = 3
Query: 288 MSTWDGSGMSQEDFMVKDEVIALDDNDQIVGHVNKYLSHRFVPGTPRGILHRAFSVFLFDQDGKLLLQKRAASKITFPNVWTNTCCSHPLYGYEPSEVDKPEDLKNGSVPGVKNAAVRKLDHELGIAAKDVPVDSFKFLTRLHYYAADVVTHGPNAPWGEHEIDYILFMQVDSSLQMKPHPDEVDAVKWVTLEEMDAMMADKDNL-WSPWFRIIVERFAREWWLNLNETLKTDKYVDTVNIHRFDPPPEFRGGAGVTG 1058
M+TWD S MSQEDFM KDE I LD++D+IVGH +KY HRF T RGILHRAFSVFLF+++GKLLLQ+RAA KITFPNVWTNTCCSHPLYG++P+EVD P D+ G VPGVK AAVRKLDHELGI DVPV+S KFLTR+HY+AADVVTHG +PWGEHEIDYILF QVD +++ +P+EV KWVT +E+ MM L WSPWFRIIVERF WW +LN TL T+K+VD IHRFDP E GG G G
Sbjct: 1 MATWDAS-MSQEDFMYKDECIVLDEHDRIVGHESKYEVHRFNAATQRGILHRAFSVFLFNKEGKLLLQQRAADKITFPNVWTNTCCSHPLYGFDPTEVDTPLDVALGRVPGVKRAAVRKLDHELGIRPGDVPVESMKFLTRMHYWAADVVTHGKKSPWGEHEIDYILFAQVDD-VEINANPEEVQDTKWVTFQELKNMMKPSSGLLWSPWFRIIVERFVPAWWEDLNATLTTNKHVDVRTIHRFDPTREHMGGDGDAG 256
BLAST of mRNA_H-canaliculatus_F_contig1283.2362.1 vs. uniprot
Match: A0A6U3RM04_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3RM04_9STRA) HSP 1 Score: 347 bits (890), Expect = 4.490e-106 Identity = 160/251 (63.75%), Postives = 198/251 (78.88%), Query Frame = 3
Query: 291 STWDGSGMSQEDFMVKDEVIALDDNDQIVGHVNKYLSHRFVPGTPRGILHRAFSVFLFDQDGKLLLQKRAASKITFPNVWTNTCCSHPLYGYEPSEVDKPEDLKNGSVPGVKNAAVRKLDHELGIAAKDVPVDSFKFLTRLHYYAADVVTHGPNAPWGEHEIDYILFMQVDSSLQMKPHPDEVDAVKWVTLEEMDAMMADKDNL-WSPWFRIIVERFAREWWLNLNETLKTDKYVDTVNIHRFDPPPEFRG 1040
+TW G +SQEDFM+KDE I L+D D ++GH +K +H F TPRG+LHRAFSVFLFD +G+LLLQKRA+SKITFPNVWTNTCCSHPL+GY P+EVD P + G+ G K AAVRKL+HELGI A VP++ FKFLTRLHY+AAD +THGP+A WGEHEIDYILF+Q + MK +P+EVD VK+VTL E+++MM K L WSPWFRIIVERF ++WW +L++TL+TD++VDT IH FDPP G
Sbjct: 8 TTWQGQSLSQEDFMLKDECILLNDKDDVIGHASKKAAHVFSSDTPRGMLHRAFSVFLFDSEGRLLLQKRASSKITFPNVWTNTCCSHPLHGYSPTEVDDPSSVAQGNPMGAKRAAVRKLEHELGIPASQVPIEKFKFLTRLHYWAADTITHGPSAEWGEHEIDYILFIQTPVTT-MKSNPEEVDDVKYVTLSELESMMDPKSGLLWSPWFRIIVERFLKQWWKDLSKTLETDEFVDTKTIHYFDPPMHHVG 257
BLAST of mRNA_H-canaliculatus_F_contig1283.2362.1 vs. uniprot
Match: A0A1E7FAV7_9STRA (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAV7_9STRA) HSP 1 Score: 332 bits (850), Expect = 5.610e-106 Identity = 154/248 (62.10%), Postives = 197/248 (79.44%), Query Frame = 3
Query: 294 TWDGSGMSQEDFMVKDEVIALDDNDQIVGHVNKYLSHRFVPGTPRGILHRAFSVFLFDQD-GKLLLQKRAASKITFPNVWTNTCCSHPLYGYEPSEVDKPEDLKNGSVPGVKNAAVRKLDHELGIAAKDVPVDSFKFLTRLHYYAADVVTHGPNAPWGEHEIDYILFMQVDSS--LQMKPHPDEVDAVKWVTLEEMDAMMADKDNLWSPWFRIIVERFARE-WWLNLNETLKTDKYVDTVNIHRFDPP 1025
TWDG+ MSQED M KD V+ LDD+D ++G +K LSH+F PR ILHRAFSVFLFD+ G+LLLQ+RA++KITFPNVWTNTCCSHPL+G EPSEVD+P+D+ +G+ G K AA+RKLDHELGI ++ +P+++FKFLTRLHY+AAD VTHGP++ WGEHEIDY+LF+ V S L +KPHPDEVDAVKWVT + + MM DK L+SPWFR+I +++ + WW +L +T+ TDK+ D IH FDPP
Sbjct: 11 TWDGNAMSQEDMMKKDTVLVLDDDDNVIGSASKKLSHQFTMEQPRAILHRAFSVFLFDESTGELLLQQRASTKITFPNVWTNTCCSHPLHGMEPSEVDQPKDVADGTTMGAKEAAIRKLDHELGIPSEQLPINNFKFLTRLHYWAADTVTHGPDSEWGEHEIDYVLFLCVPSKSDLTVKPHPDEVDAVKWVTRQGLIDMMEDKSLLFSPWFRLICKKWLLDSWWKDLKQTMTTDKHCDYTTIHCFDPP 258
BLAST of mRNA_H-canaliculatus_F_contig1283.2362.1 vs. uniprot
Match: A0A7S3H547_9STRA (Isopentenyl-diphosphate Delta-isomerase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H547_9STRA) HSP 1 Score: 336 bits (861), Expect = 2.960e-104 Identity = 157/249 (63.05%), Postives = 191/249 (76.71%), Query Frame = 3
Query: 303 GSGMSQEDFMVKDEVIALDDNDQIVGHVNKYLSHRFVPGTPRGILHRAFSVFLFDQDGKLLLQKRAASKITFPNVWTNTCCSHPLYGYEPSEVDKPEDLKNGSVPGVKNAAVRKLDHELGIAAKDVPVDSFKFLTRLHYYAADVVTHGPNAPWGEHEIDYILFMQVDSSLQMKPHPDEVDAVKWVTLEEMDAMMADKDNLWSPWFRIIVERFAREWWLNLNETLKTDKYVDTVNIHRFDPPPEFRGGAG 1049
G GM+Q+D M KD VI +DDND+I+G+ +K SH F PRG LHRAFSVFLF+++GKLLLQ+RA KITFP VWTNTCCSHPL+GY+PSEVD P+D+ +G VPGVKNAA+RKL+HELGI D+ FKFLTRLHY+AADVVTHG APWGEHE+DYILF++ ++ K +P+EV K+VTL E+ MM KD LWSPWFRII E+F WW +L+ TL TD++VD IHRFDP E GGAG
Sbjct: 24 GQGMTQDDMMAKDMVILVDDNDEIIGNASKVASHTFSKKNPRGQLHRAFSVFLFNEEGKLLLQQRADDKITFPAVWTNTCCSHPLHGYDPSEVDSPKDVASGKVPGVKNAAIRKLEHELGINPNDLEHADFKFLTRLHYWAADVVTHGKKAPWGEHEVDYILFIK--KNVTFKANPEEVMDTKYVTLPELQKMMKKKDLLWSPWFRIIAEQFLVHWWKDLDATLTTDRFVDVTTIHRFDPTAEHMGGAG 270
BLAST of mRNA_H-canaliculatus_F_contig1283.2362.1 vs. uniprot
Match: A0A7S2NWK1_9STRA (Isopentenyl-diphosphate Delta-isomerase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWK1_9STRA) HSP 1 Score: 327 bits (838), Expect = 3.720e-104 Identity = 158/251 (62.95%), Postives = 195/251 (77.69%), Query Frame = 3
Query: 291 STWDGSGMSQEDFMVKDEVIALDDNDQIVGHVNKYLSHRF--VPGTPRGILHRAFSVFLFDQDGKLLLQKRAASKITFPNVWTNTCCSHPLYGYEPSEVDKPEDLKNGSVPGVKNAAVRKLDHELGIAAKDVPVDSFKFLTRLHYYAADVVTHGPNAPWGEHEIDYILFMQVDSS-LQMKPHPDEVDAVKWVTLEEMDAMMADKDNLWSPWFRIIVERFARE-WWLNLNETLKTDKYVDTVNIHRFDPPPE 1031
+TW GSG++Q D M KD V+ LD+ D ++G +K SH F T RGILHRAFSVFLF++ G+LLLQ+RAASKITFPNVWTNTCCSHPL+G EP EVD P+D+++GSV GVK+AAVRKL HELGI A+ VP++ FKFLTRLHY+AAD VTHG +PWGEHEIDY+LF+QV+ S L + PHPDEVDA+KWV+ E++ M K LWSPWFR+IV ++ WW +L TL+TD + D NIHRFDPP E
Sbjct: 15 ATWTGSGLTQSDLMTKDTVLVLDEADNVIGSASKKESHVFDATTNTQRGILHRAFSVFLFNERGELLLQQRAASKITFPNVWTNTCCSHPLHGLEPGEVDGPQDVQDGSVMGVKHAAVRKLWHELGIPAEQVPIEKFKFLTRLHYWAADTVTHGKESPWGEHEIDYVLFIQVEQSKLTINPHPDEVDAIKWVSKEQLIEEM--KVGLWSPWFRLIVNKWVIPVWWNDLKMTLETDVHCDYENIHRFDPPEE 263 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1283.2362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1283.2362.1 >prot_H-canaliculatus_F_contig1283.2362.1 ID=prot_H-canaliculatus_F_contig1283.2362.1|Name=mRNA_H-canaliculatus_F_contig1283.2362.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=331bp MSTWDGSGMSQEDFMVKDEVIALDDNDQIVGHVNKYLSHRFVPGTPRGILback to top mRNA from alignment at H-canaliculatus_F_contig1283:16305..20791+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1283.2362.1 ID=mRNA_H-canaliculatus_F_contig1283.2362.1|Name=mRNA_H-canaliculatus_F_contig1283.2362.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4487bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1283:16305..20791+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1283:16305..20791+ >mRNA_H-canaliculatus_F_contig1283.2362.1 ID=mRNA_H-canaliculatus_F_contig1283.2362.1|Name=mRNA_H-canaliculatus_F_contig1283.2362.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1986bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1283:16305..20791+ (Hapterophycus canaliculatus Oshoro5f female)back to top |