mRNA_H-canaliculatus_F_contig1283.2361.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1283.2361.1
Unique NamemRNA_H-canaliculatus_F_contig1283.2361.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1283.2361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1283contigH-canaliculatus_F_contig1283:15467..16054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size588
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1283.2361.1prot_H-canaliculatus_F_contig1283.2361.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1283 15513..15812 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929013.464222-UTR-H-canaliculatus_F_contig1283:15466..155121622929013.464222-UTR-H-canaliculatus_F_contig1283:15466..15512Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1283 15467..15512 +
1696845647.2693546-UTR-H-canaliculatus_F_contig1283:15466..155121696845647.2693546-UTR-H-canaliculatus_F_contig1283:15466..15512Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1283 15467..15512 +
1622929013.4892037-UTR-H-canaliculatus_F_contig1283:15812..160541622929013.4892037-UTR-H-canaliculatus_F_contig1283:15812..16054Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1283 15813..16054 +
1696845647.2899835-UTR-H-canaliculatus_F_contig1283:15812..160541696845647.2899835-UTR-H-canaliculatus_F_contig1283:15812..16054Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1283 15813..16054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929013.4767675-CDS-H-canaliculatus_F_contig1283:15512..158121622929013.4767675-CDS-H-canaliculatus_F_contig1283:15512..15812Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1283 15513..15812 +
1696845647.2796292-CDS-H-canaliculatus_F_contig1283:15512..158121696845647.2796292-CDS-H-canaliculatus_F_contig1283:15512..15812Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1283 15513..15812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1283.2361.1

>prot_H-canaliculatus_F_contig1283.2361.1 ID=prot_H-canaliculatus_F_contig1283.2361.1|Name=mRNA_H-canaliculatus_F_contig1283.2361.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
MTAEAVAVKAAAAAAGTADGAPCASRRPLSHSDRREDCLRTRPVLSGSAP
CSTGMVLERRTPRLMWQPREHEPAVSLPASCCHRGCGTFIHMAGPQFDT*
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mRNA from alignment at H-canaliculatus_F_contig1283:15467..16054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1283.2361.1 ID=mRNA_H-canaliculatus_F_contig1283.2361.1|Name=mRNA_H-canaliculatus_F_contig1283.2361.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1283:15467..16054+ (Hapterophycus canaliculatus Oshoro5f female)
CGGCAGGCTTTGCCTCGCGCTTGTAGGAGCGCGAGCGCTCTCTCCTATGA
CAGCTGAAGCCGTTGCTGTCAAGGCCGCTGCTGCAGCCGCCGGCACTGCT
GACGGCGCTCCGTGCGCATCTCGAAGGCCTCTTAGTCACTCCGATCGAAG
GGAAGACTGTCTTCGTACAAGGCCCGTTCTATCTGGGAGCGCTCCTTGTT
CAACGGGAATGGTTCTTGAACGGCGCACGCCGAGGCTGATGTGGCAACCC
CGAGAGCATGAACCAGCGGTATCTTTGCCGGCATCGTGCTGTCATCGCGG
CTGTGGTACTTTCATTCATATGGCAGGTCCGCAGTTTGATACATAGTGGC
AGCGCGAAAGGTACACCGGCGTCGTGGTAAAGTGCCGCAATTCGTACTAC
CAGGTACAGTACAGGATTACTCTAGTACAAGTTATTCCGCTCTCATTTGA
TAATGCGCCTCCAATCATTTTCGAGGCTTTCCAAACAAACATACTGTACA
CAAAACCACACAAACACTTGAGTGATCACGACGGTTGTATAGAAAGTTTG
GTGAATTCAGGAGGGTACTTGAGGTCCCTTTCTTTCAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1283:15467..16054+

>mRNA_H-canaliculatus_F_contig1283.2361.1 ID=mRNA_H-canaliculatus_F_contig1283.2361.1|Name=mRNA_H-canaliculatus_F_contig1283.2361.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1283:15467..16054+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACAGCTGAAGCCGTTGCTGTCAAGGCCGCTGCTGCAGCCGCCGGCAC
TGCTGACGGCGCTCCGTGCGCATCTCGAAGGCCTCTTAGTCACTCCGATC
GAAGGGAAGACTGTCTTCGTACAAGGCCCGTTCTATCTGGGAGCGCTCCT
TGTTCAACGGGAATGGTTCTTGAACGGCGCACGCCGAGGCTGATGTGGCA
ACCCCGAGAGCATGAACCAGCGGTATCTTTGCCGGCATCGTGCTGTCATC
GCGGCTGTGGTACTTTCATTCATATGGCAGGTCCGCAGTTTGATACATAG
ATGACAGCTGAAGCCGTTGCTGTCAAGGCCGCTGCTGCAGCCGCCGGCAC
TGCTGACGGCGCTCCGTGCGCATCTCGAAGGCCTCTTAGTCACTCCGATC
GAAGGGAAGACTGTCTTCGTACAAGGCCCGTTCTATCTGGGAGCGCTCCT
TGTTCAACGGGAATGGTTCTTGAACGGCGCACGCCGAGGCTGATGTGGCA
ACCCCGAGAGCATGAACCAGCGGTATCTTTGCCGGCATCGTGCTGTCATC
GCGGCTGTGGTACTTTCATTCATATGGCAGGTCCGCAGTTTGATACATAG
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