mRNA_H-canaliculatus_F_contig1283.2359.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1283.2359.1
Unique NamemRNA_H-canaliculatus_F_contig1283.2359.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1283.2359.1 vs. uniprot
Match: D7G0Y7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y7_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 5.230e-18
Identity = 50/118 (42.37%), Postives = 65/118 (55.08%), Query Frame = 2 
Query:  212 DGLLRYLGDDVVLTITNTGSVLVMIGTHVVIEKHDPRRDTLALGWFKKLLRKVNLLRIIRDAVRRXXXXXXXXXXXXXXXXXDGAENVVISDEYSLHVVQNGFEVRLEEDFAWGWYVD 565
            DG L Y GD  VL +T TG V+V I   +VIE  +PR+     GWF+  +RK N +R + DA RR                     + ++S +YSLHVV+ GFEVRLE +F WGWY D
Sbjct:  544 DGPLPYWGDGTVLKVTETGDVVVSIAGEIVIEMANPRKAKKG-GWFRNHVRKHNPIRKVGDAFRRHLHSRRKGSSNSDPSDSVHDTDTIVSTDYSLHVVEKGFEVRLEGEFVWGWYTD 660
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BLAST of mRNA_H-canaliculatus_F_contig1283.2359.1 vs. uniprot
Match: D8LLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 3.540e-15
Identity = 52/122 (42.62%), Postives = 67/122 (54.92%), Query Frame = 2 
Query:  224 RYLGDDVVLTITNTGSVLVMIGTHVVIEKHDP-RRDTLAL-------GWFKKLLRKVNLLRIIRDAVRRXXXXXXXXXXXXXXXXXDGAENVVISDEYSLHVVQNGFEVRLEEDFAWGWYVD 565
            RY GDD+VL +T TG V+V IG  +V+EK +P RR    L        W +K LRK N L  +   +RR                 +GA+ +V S  YSLHVV+ GFEV+LE  F WGWY+D
Sbjct: 1568 RYFGDDIVLQVTKTGDVVVTIGGQIVMEKRNPLRRQAENLDQSGGRGNWVEKQLRKANSLATLGRIIRRHRLRRENEGGVDS----NGADEIV-SFGYSLHVVEKGFEVKLEGVFVWGWYLD 1684
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BLAST of mRNA_H-canaliculatus_F_contig1283.2359.1 vs. uniprot
Match: D8LLS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS3_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.570e-13
Identity = 54/118 (45.76%), Postives = 68/118 (57.63%), Query Frame = 2 
Query:  227 YLGDDVVLTITNTGSVLVMIGTHVVIEKHDPRRDTLALGWFKKL-----LRKVN-LLRIIRDAVRRXXXXXXXXXXXXXXXXXDGAENVVISDEYSLHVVQNGFEVRLEEDFAWGWYV 562
            Y GDDVVL +T+ G VLV +G  VV++K +P R    +GW KKL      +KV  + R +    +R     XXXXX       D  +  V S  YSLHVV+NGF+VRLE  F WGWYV
Sbjct: 1386 YWGDDVVLKVTDMGDVLVTVGDRVVVQKRNPNRK---VGWVKKLGNSRPAKKVKGIFRRLGRRGKRDKNDNXXXXXTRENNARDDDKGAVRSTLYSLHVVENGFQVRLEGVFVWGWYV 1500
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BLAST of mRNA_H-canaliculatus_F_contig1283.2359.1 vs. uniprot
Match: D7G9F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F6_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.500e-11
Identity = 43/126 (34.13%), Postives = 58/126 (46.03%), Query Frame = 2 
Query:  209 GDGLLRYLGDDVVLTITNTGSVLVMIGTHVVIEKHDPRRDTLALGWFKKLLRKVNLLRIIRDAVRRXXXXXXXXXXXXXXXXXD-------GAENVVISDEYSLHVVQNGFEVRLEEDFAWGWYVD 565
            GD   R    DV L +TNTG VLV +G  VV++K +P        W ++ + K   ++ I+D   R                 D         +   +S  YSLHVV+NG EVRLE  F WGWY +
Sbjct:  291 GDEARRXXXXDVALKVTNTGDVLVTVGDLVVVQKRNPMWTKKKESWLQRKVAKSKPVKKIKDVFGRLGRRGKGNGKTDNKARSDXXXXXXGNGDGAPVSTMYSLHVVENGLEVRLEGVFMWGWYAE 416
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BLAST of mRNA_H-canaliculatus_F_contig1283.2359.1 vs. uniprot
Match: D8LLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ5_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.270e-11
Identity = 50/125 (40.00%), Postives = 62/125 (49.60%), Query Frame = 2 
Query:  227 YLGDDVVLTITNTGSVLVMIGTHVVIEKHDPRRDTLALGWFKKL-----LRKVNLLRIIRDAVRRXXXXXXXXXXXXXXXXXDGA--------ENVVISDEYSLHVVQNGFEVRLEEDFAWGWYV 562
            Y GDDVVL +T+ G VLV +G  VV++K +P R    +GW KKL      +KV    I R   RR                 +          +  V S  YSLHVV+NGF+VRLE  F WGWYV
Sbjct: 1551 YWGDDVVLKVTDMGDVLVAVGDRVVVQKRNPNRK---VGWVKKLGNSRPAKKVK--GIFRRLGRRGKRDKNDIDNDSNTRENNAXXXXXXXDNKGAVRSTLYSLHVVENGFQVRLEGVFVWGWYV 1670
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BLAST of mRNA_H-canaliculatus_F_contig1283.2359.1 vs. uniprot
Match: A0A6H5L8D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D9_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.460e-10
Identity = 54/122 (44.26%), Postives = 69/122 (56.56%), Query Frame = 2 
Query:  224 RYLGDDVVLTITNTGSVLVMIGTHVVIEKHDPRRDTLALGWFKKL--LRKVNLLRIIRDAVRRXXXXXXXXXXXXXXXXXDGAEN-------VVISDEYSLHVVQNGFEVRLEEDFAWGWYV 562
            RY GDDVVL +T+ G VLV +G  VV++K +P R    +GW KKL   R   +++ I  ++ R         XXXXXXXX   +N        V S  YSLHVV+NG E+RL   F WGW V
Sbjct: 1511 RYWGDDVVLKVTDMGDVLVTVGDRVVVQKLNPNRK---VGWVKKLGESRPAKMIKGIFRSLGRRGKRDKSDNXXXXXXXXXTRDNKNRDDKGAVRSTLYSLHVVENGVEIRLGGVFVWGWNV 1629
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1283.2359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G0Y7_ECTSI5.230e-1842.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ0_ECTSI3.540e-1542.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLS3_ECTSI1.570e-1345.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G9F6_ECTSI1.500e-1134.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ5_ECTSI2.270e-1140.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8D9_9PHAE5.460e-1044.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1283contigH-canaliculatus_F_contig1283:2..1271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1051
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1283.2359.1prot_H-canaliculatus_F_contig1283.2359.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1283 138..788 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929013.5341554-UTR-H-canaliculatus_F_contig1283:1..1371622929013.5341554-UTR-H-canaliculatus_F_contig1283:1..137Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1283 2..137 +
1696845647.3066058-UTR-H-canaliculatus_F_contig1283:1..1371696845647.3066058-UTR-H-canaliculatus_F_contig1283:1..137Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1283 2..137 +
1622929013.56915-UTR-H-canaliculatus_F_contig1283:788..12711622929013.56915-UTR-H-canaliculatus_F_contig1283:788..1271Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1283 789..1271 +
1696845647.3395948-UTR-H-canaliculatus_F_contig1283:788..12711696845647.3395948-UTR-H-canaliculatus_F_contig1283:788..1271Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1283 789..1271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929013.5459857-CDS-H-canaliculatus_F_contig1283:137..2751622929013.5459857-CDS-H-canaliculatus_F_contig1283:137..275Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1283 138..275 +
1696845647.321164-CDS-H-canaliculatus_F_contig1283:137..2751696845647.321164-CDS-H-canaliculatus_F_contig1283:137..275Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1283 138..275 +
1622929013.556515-CDS-H-canaliculatus_F_contig1283:494..7881622929013.556515-CDS-H-canaliculatus_F_contig1283:494..788Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1283 495..788 +
1696845647.3303711-CDS-H-canaliculatus_F_contig1283:494..7881696845647.3303711-CDS-H-canaliculatus_F_contig1283:494..788Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1283 495..788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1283.2359.1

>prot_H-canaliculatus_F_contig1283.2359.1 ID=prot_H-canaliculatus_F_contig1283.2359.1|Name=mRNA_H-canaliculatus_F_contig1283.2359.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=144bp
MAEGGKDIGSGTIPKTNEAGSGSGGDGLLRYLGDDVVLTITNTGSVLVMI
GTHVVIEKHDPRRDTLALGWFKKLLRKVNLLRIIRDAVRRRRRRRRRDFS
NDDNSSSDGAENVVISDEYSLHVVQNGFEVRLEEDFAWGWYVD*
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mRNA from alignment at H-canaliculatus_F_contig1283:2..1271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1283.2359.1 ID=mRNA_H-canaliculatus_F_contig1283.2359.1|Name=mRNA_H-canaliculatus_F_contig1283.2359.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1270bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1283:2..1271+ (Hapterophycus canaliculatus Oshoro5f female)
ACGAACGCGTCGTCGCCGGGCTCCTCCGGTACAGGCAGACGTGACTGCGG
CGACAGGAACTGGAGTTGAAGCCGACGACAAAGAGGGCATCGCAGCAGAT
GCAAGCGCCGAAGAAGAAAATGGCAGCGACAACAGGATGGCTGAAGGAGG
AAAGGACATCGGATCGGGGACGATACCCAAGACGAACGAAGCAGGCAGCG
GCAGCGGCGGCGACGGGCTGCTGCGGTACTTGGGCGATGATGTTGTTCTC
ACGATTACCAACACCGGCAGCGTGGTGAGTGTGGTGGGAAGAATGACATC
GTGTCATAGGTCGGGTAGCACAGTGCATGTTGGAGCATGTTGAGACGCAC
GATGTTGTCGCAGCAACGCTGATTTTCAACGTCGGAAACTGCAGACGAAA
AACAACACCACCCAGATAGTCGATATCTCGTATAAAGCTTTCTCCGTGCC
CCATTCTCGGGCAACGTGTGCCACGCCAACTGCTTGCACCCAGCTGGTGA
TGATCGGGACTCACGTCGTCATCGAGAAGCACGACCCCAGGCGGGACACG
TTGGCGCTAGGGTGGTTCAAGAAACTCCTACGTAAGGTGAACCTGCTGCG
GATCATCAGGGACGCCGTTCGCCGTCGCCGACGCCGCCGCCGCCGCGACT
TCAGCAACGACGACAACAGCAGCAGCGATGGCGCGGAGAACGTCGTGATA
AGCGATGAGTATTCCCTGCATGTAGTCCAGAATGGCTTCGAGGTCCGATT
AGAAGAGGACTTCGCGTGGGGGTGGTACGTTGATTGAGTCAAGCTAGCAC
TCCCTCTCGCCGCCCTTGCATAAAAGACGGTACCTTGTTGTGTGTTTTTT
TCGCTGTGAGCACGTAACATAGGAAGTTTGAGTGCGCTCGTTTTCGCATC
TGTATGAGGAAGCTTGGCCGTCAAGATGTTCATTGTAGACTAGGTCTTCT
GCAATGCTGTTCCGTATTGACAGGCTATAAAAAATCAACTCGTCGATCTA
TTGTCGATCTGTTGTGCACCGATCTTCGAGACGTATGTTTCAAGCTATGG
TTGTTTTTTTCCCAAGTGGTGGAGGTGCCGTACAAGAATTAGGGGGCAGT
TGCCGATGATCGCGCCGGGTCGTTTCACTAGGACCGCCAGGGAAGTTGAA
GGATCAGGATGTGGCTTACAGGTTTGTTTTATGTGTTTCTGATTGTTGTT
TCGACTTTGGAAATTTTATTTTGGATGATTTATCACACTCCGCTGCAACA
CACGGATATTTGAAATGTTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1283:2..1271+

>mRNA_H-canaliculatus_F_contig1283.2359.1 ID=mRNA_H-canaliculatus_F_contig1283.2359.1|Name=mRNA_H-canaliculatus_F_contig1283.2359.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=864bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1283:2..1271+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTGAAGGAGGAAAGGACATCGGATCGGGGACGATACCCAAGACGAA
CGAAGCAGGCAGCGGCAGCGGCGGCGACGGGCTGCTGCGGTACTTGGGCG
ATGATGTTGTTCTCACGATTACCAACACCGGCAGCGTGATGGCTGAAGGA
GGAAAGGACATCGGATCGGGGACGATACCCAAGACGAACGAAGCAGGCAG
CGGCAGCGGCGGCGACGGGCTGCTGCGGTACTTGGGCGATGATGTTGTTC
TCACGATTACCAACACCGGCAGCGTGCTGGTGATGATCGGGACTCACGTC
GTCATCGAGAAGCACGACCCCAGGCGGGACACGTTGGCGCTAGGGTGGTT
CAAGAAACTCCTACGTAAGGTGAACCTGCTGCGGATCATCAGGGACGCCG
TTCGCCGTCGCCGACGCCGCCGCCGCCGCGACTTCAGCAACGACGACAAC
AGCAGCAGCGATGGCGCGGAGAACGTCGTGATAAGCGATGAGTATTCCCT
GCATGTAGTCCAGAATGGCTTCGAGGTCCGATTAGAAGAGGACTTCGCGT
GGGGGTGGTACGTTGATTGACTGGTGATGATCGGGACTCACGTCGTCATC
GAGAAGCACGACCCCAGGCGGGACACGTTGGCGCTAGGGTGGTTCAAGAA
ACTCCTACGTAAGGTGAACCTGCTGCGGATCATCAGGGACGCCGTTCGCC
GTCGCCGACGCCGCCGCCGCCGCGACTTCAGCAACGACGACAACAGCAGC
AGCGATGGCGCGGAGAACGTCGTGATAAGCGATGAGTATTCCCTGCATGT
AGTCCAGAATGGCTTCGAGGTCCGATTAGAAGAGGACTTCGCGTGGGGGT
GGTACGTTGATTGA
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