mRNA_H-canaliculatus_F_contig12827.2358.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12827.2358.1
Unique NamemRNA_H-canaliculatus_F_contig12827.2358.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12827.2358.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.590e-55
Identity = 188/412 (45.63%), Postives = 214/412 (51.94%), Query Frame = 1 
Query:    1 VTLTCTWCSYSRRRRELYRDFSLDIPDSEAQPHHAGEGRAGSAVGGEVEGKGTRGGVFGLETLLEGFFQPSELNLLCERCGHDQVRAEHSLAELPGALVLHVKRFKPVLTSFLEAAPKPKPK-------AASPPGSSSQSPLAVGSRKPT----ETATXXXXXXXXAVVDISQDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGESSRSGGDGGSGSGSHGGVLRSYGGVSYVKLRTPVSVPLVLDLEQFCTEYTGNAPSETLGKGVDSLDGLGIPSSP-SPSCPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRARPSDDGVSVDLSMREGWSSGRQAAAAAGRGQAGDXXXXXXXXXXDEGASNKPGGALWDSTNRRS-----GGGSRGVRETATEKGRRVAK 1185
             TLTCT CSYSRRRRELYRDFSLD+P+  A+                       GGV  L  LL+ FFQPSEL+L CERCGHD+VRAEHSLAELPGALVLH+KRFKPV ++     P PK K       A  P   S++SPL++            +T        A V   +D            XXXXXXXXXXXXXXXXXXXXX                      RSYGGVSYVKL +PVSVPL LDLE+FC+ YTGNAP+E LGK VDSLDGLGIP  P SPS  A                            GG  RP+D GVSVDL  REGWSS     A  G G  G             G + +  G L ++TN        G   RG+RET  E+  RVAK
Sbjct:  753 ATLTCTKCSYSRRRRELYRDFSLDVPEP-ARRXXXXXXXXXXXXXXXXXXXXXDGGVSELGDLLDNFFQPSELSLRCERCGHDRVRAEHSLAELPGALVLHIKRFKPVASAPPPQLPPPKAKVVDSSSEAKLPVAGSAESPLSLPXXXXXXXVGRPSTAPAGAFAIAGVASPEDDAGCATAVEAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGGVSYVKLASPVSVPLELDLERFCSGYTGNAPAEDLGKQVDSLDGLGIPRVPRSPSAFASLRAAGTGLCAANRSGPNPAGG------GGEKRPTD-GVSVDLFAREGWSSTSSGQAGVGEGGGGGSVAP--------GVNRRALGPLGETTNSSXXXXGIGDRRRGIRETVAERRERVAK 1148
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BLAST of mRNA_H-canaliculatus_F_contig12827.2358.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.470e-45
Identity = 183/407 (44.96%), Postives = 209/407 (51.35%), Query Frame = 1 
Query:    1 VTLTCTWCSYSRRRRELYRDFSLDIPDSEAQPHHAGEGRAGSAVGGEVEGKGTR-GGVFGLETLLEGFFQPSELNLLCERCGHDQVRAEHSLAELPGALVLHVKRFKPVLTSFLEAAPKPKPKAASPPGSSSQSPLAVGSRKPTETATXXXXXXXXAVVDISQDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGESSRSGGDGGSGSGSHGGVL----------RSYGGVSYVKLRTPVSVPLVLDLEQFCTEYTGNAPSETLGKGVDSLDGLGI-PSSP-SPSCPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRARPSDDGVSVDLSMREGWSSGRQAAAAAGRGQAGDXXXXXXXXXXDEGASNKPGGALWDSTNRRS-----GGGSRGVRETATEK 1167
             TLTCT CSYSRRRRELYRDFSLD+P+   +                        GGV GL  LL+ FFQPSEL+L CERCGHD+VRAEHSLAELPGALVLHVKRFKP  ++                 S + SP+A           XXX     A    S  AG          XXXXXXXXXXXXXXXXXXXXX                                RSYGGVSYVKL +PVSVPL LDLE+FC+ YTGNAP+E LGK VDSLDGLGI P +P SPS  A                    XXXXXXXX      + D VSVDL  REGWSS   +  ++GR   G+            G + +  G L ++TN        G   RG+RET  E+
Sbjct:  653 ATLTCTKCSYSRRRRELYRDFSLDVPEPARRXXXXXXXXXXXXXXXXXXXXXXXDGGVSGLGDLLDSFFQPSELSLRCERCGHDRVRAEHSLAELPGALVLHVKRFKPAASAXXXXXXXXXXXXXXXXASEATSPVAGSXXXXXXXXXXXXGRSSIAPAGASATAGVPSPEDDAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGGVSYVKLSSPVSVPLELDLERFCSGYTGNAPAEDLGKQVDSLDGLGILPRAPRSPSAFASLRAAGTGLCAAIRAAPKSAXXXXXXXXXXXXXRASDDVSVDLFAREGWSS-TSSLTSSGRDGVGEGGGGGSAAP---GVNRRALGPLGETTNSSXXXXXIGDRRRGIRETVAER 1055
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12827.2358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUE2_9PHAE1.590e-5545.63USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2P5_ECTSI1.470e-4544.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12827contigH-canaliculatus_F_contig12827:1452..3345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue5.6e-44
Seed eggNOG ortholog2880.D7G2P5
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2EX8U@1,2SYYR@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1187
Cds size1185
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12827.2358.1prot_H-canaliculatus_F_contig12827.2358.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12827 1452..3345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929013.2843435-CDS-H-canaliculatus_F_contig12827:1451..15491622929013.2843435-CDS-H-canaliculatus_F_contig12827:1451..1549Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12827 1452..1549 -
1696845647.202779-CDS-H-canaliculatus_F_contig12827:1451..15491696845647.202779-CDS-H-canaliculatus_F_contig12827:1451..1549Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12827 1452..1549 -
1622929013.296701-CDS-H-canaliculatus_F_contig12827:1786..26601622929013.296701-CDS-H-canaliculatus_F_contig12827:1786..2660Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12827 1787..2660 -
1696845647.2123199-CDS-H-canaliculatus_F_contig12827:1786..26601696845647.2123199-CDS-H-canaliculatus_F_contig12827:1786..2660Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12827 1787..2660 -
1622929013.316724-CDS-H-canaliculatus_F_contig12827:3132..33451622929013.316724-CDS-H-canaliculatus_F_contig12827:3132..3345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12827 3133..3345 -
1696845647.223407-CDS-H-canaliculatus_F_contig12827:3132..33451696845647.223407-CDS-H-canaliculatus_F_contig12827:3132..3345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12827 3133..3345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12827.2358.1

>prot_H-canaliculatus_F_contig12827.2358.1 ID=prot_H-canaliculatus_F_contig12827.2358.1|Name=mRNA_H-canaliculatus_F_contig12827.2358.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=395bp
VTLTCTWCSYSRRRRELYRDFSLDIPDSEAQPHHAGEGRAGSAVGGEVEG
KGTRGGVFGLETLLEGFFQPSELNLLCERCGHDQVRAEHSLAELPGALVL
HVKRFKPVLTSFLEAAPKPKPKAASPPGSSSQSPLAVGSRKPTETATAAA
AAAAPAVVDISQDAGGGPAAPGAAAAGGGSDGGVTPPPPAIVGGGSTGES
SRSGGDGGSGSGSHGGVLRSYGGVSYVKLRTPVSVPLVLDLEQFCTEYTG
NAPSETLGKGVDSLDGLGIPSSPSPSCPAGAGAMVNATPKKTATAAARGG
GGGGGGVGGRARPSDDGVSVDLSMREGWSSGRQAAAAAGRGQAGDDDWAA
AGGDGDEGASNKPGGALWDSTNRRSGGGSRGVRETATEKGRRVAK
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mRNA from alignment at H-canaliculatus_F_contig12827:1452..3345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12827.2358.1 ID=mRNA_H-canaliculatus_F_contig12827.2358.1|Name=mRNA_H-canaliculatus_F_contig12827.2358.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1894bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12827:1452..3345- (Hapterophycus canaliculatus Oshoro5f female)
GTTACTCTGACTTGCACGTGGTGCTCCTACTCGAGGCGGCGGCGTGAGCT
GTACCGCGATTTTTCTCTGGACATTCCGGACTCAGAAGCGCAGCCACACC
ACGCAGGAGAGGGGAGAGCGGGGAGCGCTGTTGGGGGAGAGGTCGAAGGC
AAGGGAACGCGAGGCGGCGTCTTTGGACTGGAAACCCTTCTGGAGGGATT
TTTCCAGCCGTCGGTGAGCGCGCAGGTCGCGCTTGTCTGCCTTCTTGCCA
GCTTTCAGTTTTCCGACCCGCGCGGGAACGGCTTCAGGTGCATGCTGTAG
GCTGTTTGTTTTTGCCAAGATCTGTGTTTTCCCTGGGTCCCTGGGTCCGG
CGGTCTACTCATCACTTGGCCTGTGTAACTTGGCTTCGTATTGCGATAGC
CAACGAAGCATCATCCCGTACCCCGCCAGCCTGGCTACATACCCCCCCGA
ACGGACCACCGTTCTCGCCGCACAGCTGATTATCTGGTAGCAGCCACCCT
TGGTGTGATTTACCTTTCGTGTCTTCTCTGCACTGTGTCCGCGTCGCGAC
GGACGGACGAGTCCCTATTTAGCTGCTACTGCTGCTGCTGCTGCTGCTGC
TGCCGATGCCGCTTCTGATGCCACCGCTGTTGCTCCTCTCCCATCCCGCT
CCCCCCTTCAACTCTCCGCTTCCTCCCTTCCACAGGAGTTGAACCTCCTG
TGCGAGCGCTGCGGCCACGACCAAGTCCGCGCGGAGCACTCCCTCGCCGA
GCTGCCGGGAGCCCTGGTCCTTCACGTCAAGCGCTTCAAGCCCGTCCTCA
CGTCCTTCCTGGAAGCGGCGCCGAAGCCCAAGCCAAAGGCCGCCTCCCCC
CCCGGGAGCTCGTCGCAGTCGCCCCTGGCGGTGGGATCGCGAAAGCCGAC
GGAGACCGCTACTGCTGCTGCGGCCGCTGCCGCCCCTGCGGTCGTTGACA
TTTCGCAGGACGCCGGGGGCGGCCCTGCCGCCCCCGGTGCCGCCGCCGCT
GGTGGTGGTTCCGACGGAGGCGTCACTCCTCCTCCGCCCGCCATTGTGGG
AGGAGGGAGCACGGGAGAGAGCAGTCGGAGCGGCGGCGACGGCGGCAGCG
GCAGCGGCAGCCATGGAGGGGTCCTCCGTTCCTACGGAGGCGTGTCGTAC
GTGAAGCTGAGGACGCCGGTCTCCGTCCCGCTGGTGCTGGACCTAGAGCA
GTTCTGCACGGAGTACACCGGAAACGCCCCCTCGGAAACCCTGGGGAAGG
GGGTGGACTCGCTGGACGGCCTCGGTATCCCCTCGTCCCCGTCCCCGTCG
TGCCCGGCAGGTGCCGGCGCGATGGTTAACGCGACGCCGAAGAAAACTGC
GACAGCGGCGGCGAGAGGCGGCGGCGGCGGCGGCGGAGGTGTTGGGGGGC
GGGCGCGGCCTTCCGATGACGGAGTCTCGGTGGATCTGTCCATGCGAGAG
GGGTGGTCGTCCGGGAGGCAGGCGGCAGCGGCGGCTGGACGGGGTCAAGC
TGGGGATGACGACTGGGCCGCCGCCGGCGGGGACGGGGATGAGGGCGCGA
GCAACAAGCGTTCCTCCAGAAGTGGAGGCGGTAGCAGCGAGATGGGAGGT
GGTAGCGAGATCGACCAGTACGCCTCCTTTGAGACACCCTCGCCTTTGGA
GACGTTGCATGAGGAAGGCGAAGGCCGGGGCGCAGGGAGCGACGCGAGCA
CGAGCATCGGCGGCAACGGGTACGGCGGCGGTGCGAGAAGCTCCTCCACG
CTCGGCTCCTCGGGGGTGAAGCGGAAAGCGGAAGCTCCGGACAAAGCCGG
CGGCGCTCTGTGGGATTCCACAAACAGACGCAGCGGCGGCGGCAGCAGGG
GCGTTCGGGAGACGGCCACCGAGAAGGGCCGGCGGGTTGCCAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12827:1452..3345-

>mRNA_H-canaliculatus_F_contig12827.2358.1 ID=mRNA_H-canaliculatus_F_contig12827.2358.1|Name=mRNA_H-canaliculatus_F_contig12827.2358.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2370bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12827:1452..3345- (Hapterophycus canaliculatus Oshoro5f female)
GTTACTCTGACTTGCACGTGGTGCTCCTACTCGAGGCGGCGGCGTGAGCT
GTACCGCGATTTTTCTCTGGACATTCCGGACTCAGAAGCGCAGCCACACC
ACGCAGGAGAGGGGAGAGCGGGGAGCGCTGTTGGGGGAGAGGTCGAAGGC
AAGGGAACGCGAGGCGGCGTCTTTGGACTGGAAACCCTTCTGGAGGGATT
TTTCCAGCCGTCGGTTACTCTGACTTGCACGTGGTGCTCCTACTCGAGGC
GGCGGCGTGAGCTGTACCGCGATTTTTCTCTGGACATTCCGGACTCAGAA
GCGCAGCCACACCACGCAGGAGAGGGGAGAGCGGGGAGCGCTGTTGGGGG
AGAGGTCGAAGGCAAGGGAACGCGAGGCGGCGTCTTTGGACTGGAAACCC
TTCTGGAGGGATTTTTCCAGCCGTCGGAGTTGAACCTCCTGTGCGAGCGC
TGCGGCCACGACCAAGTCCGCGCGGAGCACTCCCTCGCCGAGCTGCCGGG
AGCCCTGGTCCTTCACGTCAAGCGCTTCAAGCCCGTCCTCACGTCCTTCC
TGGAAGCGGCGCCGAAGCCCAAGCCAAAGGCCGCCTCCCCCCCCGGGAGC
TCGTCGCAGTCGCCCCTGGCGGTGGGATCGCGAAAGCCGACGGAGACCGC
TACTGCTGCTGCGGCCGCTGCCGCCCCTGCGGTCGTTGACATTTCGCAGG
ACGCCGGGGGCGGCCCTGCCGCCCCCGGTGCCGCCGCCGCTGGTGGTGGT
TCCGACGGAGGCGTCACTCCTCCTCCGCCCGCCATTGTGGGAGGAGGGAG
CACGGGAGAGAGCAGTCGGAGCGGCGGCGACGGCGGCAGCGGCAGCGGCA
GCCATGGAGGGGTCCTCCGTTCCTACGGAGGCGTGTCGTACGTGAAGCTG
AGGACGCCGGTCTCCGTCCCGCTGGTGCTGGACCTAGAGCAGTTCTGCAC
GGAGTACACCGGAAACGCCCCCTCGGAAACCCTGGGGAAGGGGGTGGACT
CGCTGGACGGCCTCGGTATCCCCTCGTCCCCGTCCCCGTCGTGCCCGGCA
GGTGCCGGCGCGATGGTTAACGCGACGCCGAAGAAAACTGCGACAGCGGC
GGCGAGAGGCGGCGGCGGCGGCGGCGGAGGTGTTGGGGGGCGGGCGCGGC
CTTCCGATGACGGAGTCTCGGTGGATCTGTCCATGCGAGAGGGGTGGTCG
TCCGGGAGGCAGGCGGCAGCGGCGGCTGGACGGGGTCAAGCTGGGGATGA
CGACTGGGCCGCCGCCGGCGGGGACGGGGATGAGGGCGCGAGCAACAAGC
GAGTTGAACCTCCTGTGCGAGCGCTGCGGCCACGACCAAGTCCGCGCGGA
GCACTCCCTCGCCGAGCTGCCGGGAGCCCTGGTCCTTCACGTCAAGCGCT
TCAAGCCCGTCCTCACGTCCTTCCTGGAAGCGGCGCCGAAGCCCAAGCCA
AAGGCCGCCTCCCCCCCCGGGAGCTCGTCGCAGTCGCCCCTGGCGGTGGG
ATCGCGAAAGCCGACGGAGACCGCTACTGCTGCTGCGGCCGCTGCCGCCC
CTGCGGTCGTTGACATTTCGCAGGACGCCGGGGGCGGCCCTGCCGCCCCC
GGTGCCGCCGCCGCTGGTGGTGGTTCCGACGGAGGCGTCACTCCTCCTCC
GCCCGCCATTGTGGGAGGAGGGAGCACGGGAGAGAGCAGTCGGAGCGGCG
GCGACGGCGGCAGCGGCAGCGGCAGCCATGGAGGGGTCCTCCGTTCCTAC
GGAGGCGTGTCGTACGTGAAGCTGAGGACGCCGGTCTCCGTCCCGCTGGT
GCTGGACCTAGAGCAGTTCTGCACGGAGTACACCGGAAACGCCCCCTCGG
AAACCCTGGGGAAGGGGGTGGACTCGCTGGACGGCCTCGGTATCCCCTCG
TCCCCGTCCCCGTCGTGCCCGGCAGGTGCCGGCGCGATGGTTAACGCGAC
GCCGAAGAAAACTGCGACAGCGGCGGCGAGAGGCGGCGGCGGCGGCGGCG
GAGGTGTTGGGGGGCGGGCGCGGCCTTCCGATGACGGAGTCTCGGTGGAT
CTGTCCATGCGAGAGGGGTGGTCGTCCGGGAGGCAGGCGGCAGCGGCGGC
TGGACGGGGTCAAGCTGGGGATGACGACTGGGCCGCCGCCGGCGGGGACG
GGGATGAGGGCGCGAGCAACAAGCCCGGCGGCGCTCTGTGGGATTCCACA
AACAGACGCAGCGGCGGCGGCAGCAGGGGCGTTCGGGAGACGGCCACCGA
GAAGGGCCGGCGGGTTGCCAAGCCGGCGGCGCTCTGTGGGATTCCACAAA
CAGACGCAGCGGCGGCGGCAGCAGGGGCGTTCGGGAGACGGCCACCGAGA
AGGGCCGGCGGGTTGCCAAG
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