mRNA_H-canaliculatus_F_contig12824.2357.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12824.2357.1
Unique NamemRNA_H-canaliculatus_F_contig12824.2357.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12824.2357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12824contigH-canaliculatus_F_contig12824:2677..3106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size431
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929013.2172067-CDS-H-canaliculatus_F_contig12824:2676..30511622929013.2172067-CDS-H-canaliculatus_F_contig12824:2676..3051Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12824 2677..3051 +
1696845647.181017-CDS-H-canaliculatus_F_contig12824:2676..30511696845647.181017-CDS-H-canaliculatus_F_contig12824:2676..3051Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12824 2677..3051 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929013.2312372-UTR-H-canaliculatus_F_contig12824:3051..31061622929013.2312372-UTR-H-canaliculatus_F_contig12824:3051..3106Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12824 3052..3106 +
1696845647.192108-UTR-H-canaliculatus_F_contig12824:3051..31061696845647.192108-UTR-H-canaliculatus_F_contig12824:3051..3106Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12824 3052..3106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12824.2357.1prot_H-canaliculatus_F_contig12824.2357.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12824 2677..3051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12824.2357.1

>prot_H-canaliculatus_F_contig12824.2357.1 ID=prot_H-canaliculatus_F_contig12824.2357.1|Name=mRNA_H-canaliculatus_F_contig12824.2357.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
TTITNSFKPFPFNPQRLFHAWEARNSVRSSAVALRPVDVEASTVSNSACI
CPSNSTSTTSTTRTSANAGDGATVSPRPRRSANVLLISRRRTLARRPRTA
SVPRQHSSTFLGPCSSNAVEIDTR*
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mRNA from alignment at H-canaliculatus_F_contig12824:2677..3106+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12824.2357.1 ID=mRNA_H-canaliculatus_F_contig12824.2357.1|Name=mRNA_H-canaliculatus_F_contig12824.2357.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=430bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12824:2677..3106+ (Hapterophycus canaliculatus Oshoro5f female)
ACCACCATCACCAACTCCTTCAAGCCCTTCCCGTTCAACCCCCAGCGATT
GTTCCACGCCTGGGAAGCCCGCAACTCCGTTCGCTCGAGCGCCGTCGCTC
TCCGCCCCGTAGACGTCGAGGCCTCGACCGTCAGTAACAGCGCCTGCATC
TGCCCCAGCAACAGCACCAGCACCACCAGCACCACCAGGACTAGCGCCAA
CGCCGGCGACGGGGCCACCGTCTCCCCTCGCCCGAGACGCAGCGCCAACG
TCCTCCTCATCTCCCGCAGGCGCACTCTCGCCCGCAGACCCAGAACCGCG
AGTGTGCCCCGGCAACACAGCAGCACCTTCCTCGGTCCCTGCTCCAGCAA
CGCCGTCGAAATCGACACTCGCTAGTCGTCGCCCAGCCCGCCGACGAGGA
GACTTCCACACCATGGCCTCGGGCAGCCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12824:2677..3106+

>mRNA_H-canaliculatus_F_contig12824.2357.1 ID=mRNA_H-canaliculatus_F_contig12824.2357.1|Name=mRNA_H-canaliculatus_F_contig12824.2357.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12824:2677..3106+ (Hapterophycus canaliculatus Oshoro5f female)
ACCACCATCACCAACTCCTTCAAGCCCTTCCCGTTCAACCCCCAGCGATT
GTTCCACGCCTGGGAAGCCCGCAACTCCGTTCGCTCGAGCGCCGTCGCTC
TCCGCCCCGTAGACGTCGAGGCCTCGACCGTCAGTAACAGCGCCTGCATC
TGCCCCAGCAACAGCACCAGCACCACCAGCACCACCAGGACTAGCGCCAA
CGCCGGCGACGGGGCCACCGTCTCCCCTCGCCCGAGACGCAGCGCCAACG
TCCTCCTCATCTCCCGCAGGCGCACTCTCGCCCGCAGACCCAGAACCGCG
AGTGTGCCCCGGCAACACAGCAGCACCTTCCTCGGTCCCTGCTCCAGCAA
CGCCGTCGAAATCGACACTCGCTAGACCACCATCACCAACTCCTTCAAGC
CCTTCCCGTTCAACCCCCAGCGATTGTTCCACGCCTGGGAAGCCCGCAAC
TCCGTTCGCTCGAGCGCCGTCGCTCTCCGCCCCGTAGACGTCGAGGCCTC
GACCGTCAGTAACAGCGCCTGCATCTGCCCCAGCAACAGCACCAGCACCA
CCAGCACCACCAGGACTAGCGCCAACGCCGGCGACGGGGCCACCGTCTCC
CCTCGCCCGAGACGCAGCGCCAACGTCCTCCTCATCTCCCGCAGGCGCAC
TCTCGCCCGCAGACCCAGAACCGCGAGTGTGCCCCGGCAACACAGCAGCA
CCTTCCTCGGTCCCTGCTCCAGCAACGCCGTCGAAATCGACACTCGCTAG
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