mRNA_H-canaliculatus_F_contig1282.2353.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1282.2353.1
Unique NamemRNA_H-canaliculatus_F_contig1282.2353.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1282.2353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1282contigH-canaliculatus_F_contig1282:1096..8979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size190
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.252846-CDS-H-canaliculatus_F_contig1282:1095..11821622929012.252846-CDS-H-canaliculatus_F_contig1282:1095..1182Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1282 1096..1182 +
1696845646.8914711-CDS-H-canaliculatus_F_contig1282:1095..11821696845646.8914711-CDS-H-canaliculatus_F_contig1282:1095..1182Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1282 1096..1182 +
1622929012.2676415-CDS-H-canaliculatus_F_contig1282:8877..89791622929012.2676415-CDS-H-canaliculatus_F_contig1282:8877..8979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1282 8878..8979 +
1696845646.9006839-CDS-H-canaliculatus_F_contig1282:8877..89791696845646.9006839-CDS-H-canaliculatus_F_contig1282:8877..8979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1282 8878..8979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1282.2353.1prot_H-canaliculatus_F_contig1282.2353.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1282 1096..8979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1282.2353.1

>prot_H-canaliculatus_F_contig1282.2353.1 ID=prot_H-canaliculatus_F_contig1282.2353.1|Name=mRNA_H-canaliculatus_F_contig1282.2353.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=63bp
ASQGLLLVSFASKHLWYEKTSLLEEGQQETMQKRLAKERAKREQEKKLAK
LLGFKGGRGRGR*
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mRNA from alignment at H-canaliculatus_F_contig1282:1096..8979+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1282.2353.1 ID=mRNA_H-canaliculatus_F_contig1282.2353.1|Name=mRNA_H-canaliculatus_F_contig1282.2353.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7884bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1282:1096..8979+ (Hapterophycus canaliculatus Oshoro5f female)
GCATCCCAAGGGTTACTGCTCGTCTCGTTCGCATCCAAACACCTGTGGTA
TGAAAAAACATCATTGCTGGAGGAAGGACAACAGGAGGTAGGAAGGGGGC
GAGCGCGTGCTTGACACAACTGTCTAAGTGCTACGATCCTGTTTTCGAGC
AGTTTCACCCTGCAACAGGTTTCCACAAATCGCACGAAATGGAGGCATGC
CCGAAGCACAACAGCGGGATGCGATTCTTCGTTGGGGCATCGGGGTGAGT
TTGTTTCGAATGGACTTTTGGTTTGAAAACGACTCTCGGGCGGCATCGCC
AACAGGCAAGAGTGACTTGGGGCTGGTAGCAAATCAACAACATCTGAGAC
AATTTGCTGTAATCTTTTATGTCCCCACAGCGGAGAGTAGAGTACTGAGC
CAGCCGCTTAACTCGAATGGGAAGATCGATGTCCTATTAGGTTGGTCGGT
GTGGTTGCCGCCGTCCAAGGTTTAAGACTTCGCTCTTTCACCCCTTCAGA
ATCTCCCCCCCCACTCATCCGTACTTCAGCCATATGGCTCGAACGCATTT
TATACACGGCAGACATTTCCTTTCCCAATTGTGTGTTTGGCTTGGGTTTG
TTCGCTCCTTGCTATCGCGTGCAATTTTTACGGGCCTGCCGAGGGGGAGG
CTCCTCCTCAAAAAACAACAGAGATCCTCGAAGTTCCTCTGATGCCTCGG
TTTGTTTTGACTACAAGTACTTCTACTCGTATTTCGTCTTGTATTTTCCT
ACCCAACATACCCTCCCGTTCACGATGTACCGGTTCGAGGAAGGAACATG
TGCGGCAAAACACGCCGACATGTTCACCGCCGTCCCATCTTCTACAGCAT
AGCAGTTGCGAAAACACACGCTCTCCCCGAAAACATGTACTCGGTACAAG
AAGTCGGCACCACTTTCTTGGTTTCTTTTAGTGCCATCACTGCGAAAGTC
CGCACAGTCGTTTTGACGACCCTGCAGTGTACATGGCACATCGACCTTTA
TGTTTGATGAGCTGAACGTGGTGTTGACGAGGCCGCACGGCAGCGGAGAT
GAAATTCCAGCATCGTGGTGTAGAAAGCCTCGTGCCAAGCGATGAAAGCG
TTGCCAACTTGCAGCATGAATAAGCAGTACAAATTGTGAATGACCAGGAG
GACAACTGACCTTGTCATCGTTCATGATTCACGATGATACCGTTCCACCA
AATCTTTTTCAGCGCTGCTGTCTATTCAAGAATCGCTAGTAAGAACTGAA
CCCGTTCGCGGTAAATGTTTTTGGCCAAGGCAACAGCGCAGAAGGTTGAT
GGATGAGGCTTCGGGAACAAGAAACGAACCCATCCGCATGTCGTACATCA
GCTTTCGATATGCGCGTAGTATCCCCAAATGATTTAGACAGAGGTGTCCA
CAGTAGTAGTACGAGCAACGAAAACGCAGCGTCGAATCGTATGCCTTCAT
CTCCGGTGCGTCGGCAAGGACTCGGCCTAGCCCATAAATGAGGACTCCAG
CGCCGAGAAAGACGAGCTTGCTGATCAGCAGTGTAGACAGCATTGTGGAG
TGCTAGGCCTTAATTTCCGCTACGGATCTGCAGGACTCGCTCCTTTCAAG
CATAGCGTGTCTCCCGTGTTACCTGATTGCAGAGGCATGCATGCCATTTC
CTGAACAGGGGAGTGCGAGAAAAATCAAAGGAGGGAGGGGAAGGGCAAAG
TGACAGCCATAACAAGGGGAACGAAGCTATGCACAGCAGAACGCTTGGTG
CATGCGTTACTCCTGCAGTTCACTTCCGAAAGTTCACGATAGTCGCTGAA
GTCGTTTACAACCTGAGGCAGCGAGTCGTGAGGGAACACGCTGCGGTCTA
TCCAGAGAGGTGAAAGGACGCCCACAAAGCGTTCATGAACATTCTGGTGT
GAACCATCGGCCGAGCGGGGGCAGAAAGTGTGCTGCCTGCACATCAGACG
CTCGCTATACCTTTGCGTCGCCTTGCCGCGTTTTCTTATTCATTTAAGAA
GTACCGTTTGGCCGTCAGACCAAAACTGGTTTTCCAGAATTGAAAAGCTA
GCTTTTCGACGCAGCCGGCTCCCCAATTAATTTTTGGTACAGTGGAGATG
ACGGGGCGCGCGCCACTTGTAGTCGCGAGCCTCAATCCTCCCCCCGAATC
GGTGAAAGGGCACCGGTGGAGGCGAATTGAGACTGCAATCGACCGATTTG
TGTTTCTTACTACTGTATTGGTTTTACGATTACCGCAGGTCTAATTTTAT
TCATGGGCGATATCCCACTTGGAAATCGACCAAAAATTAAACACCGGGAC
GAAAACCGGGTCTGCACCATCAACGTAACTATTTGAGTTTTCAAATCATG
TACACAAGCCTAACAGAGCGTAAGATGATACCAAGATGCATGTGTTGAGG
TTGGTATCATACGCTCGTAGACGTAAAGTTCGCGCAGCATATGCACACCC
GTGAAAACTCCTACATCCAACCGGAAGAGCTTAGGGGCTACACGAACAAT
ACAAATACCCTTCCCCGCGCTCTCCTGATAATTGCATATTGACTTTTTGT
CCCCCCCCTTTCCTCTCCCCATATTTTTTTATCTCGTGATTGTGGCTATT
CGGCTCGACTACAATACAGCAAGGACAAACCTCAGGTTGCCCCACAGCAC
TGTCGGCCTCGTGTATCGCTAGTACACCAGACCACTAAACACCTACAAGC
ATCTTTGCAAGATCGACGAATTGTGGCAGGCTCAGATCTCGACTTTTCTT
CCATGTCGCTTGCTACGGACTCAGAGATGGCTCGATTCGATGGACAATCG
ACGTCTCGATGCGAACAAGTTGCTTGTACCCCATTTTGCTATGATAACTC
GACAGTACTTTGTTGCCCAACGCGTGATAGTAGAATCATCAGGTAGGGCA
GAAATATCAGTCATCAACACCAGCAAGTTCGTCGGCCGAATTTCTTTCTC
ATGCGTGCGAACTGGCTTGGCACACGCACGTACAAGGTACCAAAGTAATA
GCATGAGGGACTTGGTCACAAGTTTTTGAGGCTTCTCTTCACTCCGATGC
GAATGCGGTAGGCGTACCCAGGGGAGCTCAAGTACGAAAAACTGACTCAT
TCTTACTGTGAAGACAGTTGATTATCTTGGTGGGTTTGTTTGCTTGTCGC
GTCAGGATGCGTAGAGAGGAGCCACCGTCAAGATGGATTGCGAAGACTGC
TCTCCTTCTAGCAAGCAGAGGGAAAGCTCAGAGAAGCAATCGAAAGAGAT
GGTGATTCAAACACGAGTGGCAAAGTTGACACACCTGAGGTACCTATGGA
TTGCGAGCACATGCAAGTAATCTGCCGCGCTTTGTTTGGATAGGATTGGA
CGGCGAGAGAGGATAAAAGGTGAAAAGCACATCCCTTTGATACGAGGAGA
GAATTTCACAGCGAAGCCGCCAAATCACTCCGGTGTGGCCTTACCATGAT
GATCCCCAAACCAACGTGGAACAATGCATCGAGTGCGCACAGTCGTGTGT
GCAAGTGGGTTGGAGAGTGGGGCGGCGAGCGAGGTTTGTTCTGTGAACTC
AGCCTTCCCACTTCCGATAGCCACGTGTGCGTTGATCACTGCATTTCTAA
AAATTCCTGGTGCATAGCTAAAAATCCAGCAGCGAGTCAACCATTGATTT
GTGTAACATCTTTGTCCTGATGACTGAACAAATTATTCTTTGTTTTCATC
CGTTGTGTGCAACGCGGGCAACGGCTCTACATGCGGTGCTTTCACAACAA
CAGTATTGTACTCCCACCTTGGGTCCCTTGGGATCTACACCGACTGCAAT
ACCGAACGGCGTATCGCTGATTTCGTAAGGGGCCTCAAGCGCAAGCGGTT
GAACATAAAACAAAAGCGGACGAATAAAGTGTCAAAGAAGAACCGAGGTT
TGTTCCGATGGGTGTAAAGCACAATAACGCCACTTCGTATCCTTGAGTCA
CAGAATCTCAAGCCGTTCTTTCACCCTCTCCACGTCCATCCTTCCTGCAC
ACACCACGGCCGCAGTACGTTTTATCACTGCCTCTTCGTATCACGCATCT
TTTCCGGCGATTGGATATCTTCACCTAACAGCGGCTGTTGACATCCTTCC
TTTCCTAATAGCATCAAAGAGAGACTAGCGGTCAAACGCGACCAAAAACG
GGTATACCCGATCCATGTGTGGCCAAAATCGGTAACCCCTTTACGTGTCG
AAGTAAACTAGAGGAATCTCATTGGCCAACGTAGGCCACCACCCGCCCTT
GTTGGCATTTCCGAGGGGCAGACCCGGTTGCGCACGCCCTTGTGCGGCTG
TTCATTACCCGAAGTGTCCCGGGTTCCTAATCGCACTGTCTGGTGCATCA
TGTGTGCATGCGAAATCTTGGTGCTGTGCCCCCAAATTAAGCATGCAATG
ATCGGAAGGAGACGTTACGTTGGGCAGCACAGGGCACCCTGCCATGGATT
GCAAGTGGATTGTCTCACAGCTGCGCGATCAAATGGGTGCGGGTAGGGTG
GAAGACCTCTTTTTCTGACGACGACGAGTTGAGGACAAGCACCAAAAAGA
CCAGCATGGATGGGAGGACCTTTCTCTTCGGCGAACCCGTACAGTATGAT
TTCAAAATATACAGCAGCAAGCAGCGGTGGTAACAATATTGTCGGTAGAC
GTTACAGCAGTTGTGCATTTTGTCCCCCCTCGTTGTACGTGCGTAGAAGG
CGCAGGAAGTGTTGAGACCTCGGGCGCACATACTTGCCCGTATGCTATGT
TTCCCCTGGATTGTTTTGTAGCCTATAGTCGCAGAAACCATGCGGCTGAG
ATAAGCGGGAAGTGTGCTTGATAGACGGCGGGCGAAAAGCAGCATATCAT
TACCACGTAGGACGGGATTTGTTTTTCAGATTGTCTTTCGGGAGTTTCAG
CATGTTGCGCGTCACACGATGTTCGGACACATTTGCTTGAGTGACAGATC
CAAGCCGTTTCGTCGAGAGGGATCACTATTTTTCAAGCCAGTTTTTTCGG
CCATCCTTTCTAATAAGCCTGACATTTTCCCTGTATCGACCTGTATGTTC
TTATGATCATCTCTTTTCATCCACTCTCGCTTTTGTTGGGTGTGTGTGGC
AGTGCGAGTGACAACACTCTTTTCGCTCAAGTCTCCTGCCGATATTTATC
CTAGAGCTGTTATGGAATGTTGGCATTGGTTGATGTCGTGAGGCCGCAGG
TGAAGCTCCGTCAGCGCATTGGTGTCCGGAGGTAAGGATTGACGCACGTG
TAGGGGCGTGTGCGTAGAATCTGCGGTATTGGACTACGATCATACGCGGC
ACGATTACTCCATGCCTCCGTATTACAATTGAAAAAGCTTACGGATTCTG
GCGCGGACTTGTTTCTTGACGCACTTCCAAGTACTCCGTGCTTGCTCCCT
CGTTTTTCGTTTTGCTTGAACTGTTCGGGAAATGTCATACCGACAAAAGA
GAAAAGTCGGACCGCTCTTCTTCTACTGAAAGCGTGCGTGTTGGTGGTCG
TACAAACAGCTTGAGTAGATCCAGTAAAACGGCATCGCAAGGTCGCCAAG
GCAGCCAAGTGATCGATTTGTGAGTGGTTGGCTGTCCATGTTAGGCGCGC
CCTGCCGACGAAGTGAAATTCATACAGCGTCTCGTTCTTGCGTGCACGTG
GCAGGTACGCCTTTGAACCACAATCGACAACTTGGTAATTCTGTCAAAAG
TGAATCGATTCTGGGAGGTATTCGTGACTAGGGTTGTTCGATTGGCCTCT
TTCTACGCTTCTTTCGTGGCAACCCAATCACGAAGTGCTTTTCGCAGGCA
GATCAAGGCAACCAAGAGGAAGTGCAAGTCAATTAGGCAGGCGTCATAAT
GATACTAGCGCTGCGCGGTACTAAGCAGTTATGGGGTGCGATCGCGCGTG
TGTGCAAAAGGAGATGAGAGGAGCTTCTTAGCCGCATGTACTGTCATCTT
CTTTCGGGATTTTGACCAAGGCAAGGAAGCCCGGCGCAAGCAGCACGTCC
TTCTTCTAGCTTCGACAGCAAAATGTGCAGCCATCAGCAGTGAACTCCCT
GCCGCATGTGCTACCGTCGTACGAGTCCGGCAGTCAGGCCTCCCCAGGCA
AGTATCTGTCCCTTCGGGACACGTTTGCGGAAGTAGCTGCTAGCATTACC
CAAGGTTCGATATTGGTCGCTGGAGCTTTTCTACTTTCTCCCGTTCGGAT
GGTCAGAGATACAAACGTCCGTAGCAGGTTTCGTCGTGACAACTTCGCTT
GTGTTAGGGCCATTCCTGTTGGAAGTGTTTAGCGGCAGACGTAACCACCG
AGGAATCCCCACGAAGAAAGTTAGTTGTGGTCGGCAGATCAGTCAGATGT
ATTCTGAGTATGTGAGAGTGCGGATGGTTTCTCTTCTCGAACGGGAGTCG
GGGAAATTCCATAAGTTCCATCTTGTTCTGATAGCTCAGTTACTTGCGGC
TGCACCGCAAGTTGCTCAGGTTTGCTTAGCAGGTTTGGCTTAGTTGGCCG
ATATCTTCGACTTATCTCAAAAATGTATTTATCTCGTGTTTTGACACGAT
GGTGCCCGCGCTCTAAAGCGCTGTGAACCTTTCGTCCCGTTCGGTGAGTT
GCTCGTTCGAACCGTTCAACGGTTTCTTGCTAAAAACCGTTCGTCCGAAA
AGCTTCATAGACGAAACGCATGACCCGTAGCACACGCAGCAGAGAGAGCA
TGATCGACTTCGCGCTTGCTCGTAAATATATTTTGAAGTGGGATGAGAGT
GTTTTACAAGTCTGTATCTTGAGCAAAAGCAGTACTACCGCCGAGGGTCT
ACGAGAGCAGTGGCGCAACTGAACGATAAAACACGTGTAGACGTGTAGAA
CTCCTCTTTTTACCTTGCTGCGCACTTGCAGCAGCAGGGGACTTGTGTAG
TACGAAGTAGATGTTGATAAAGAAGAATGACGCTCGTTTTTATCATTTCT
TCGATAGGAACAAGCGCTGGGGTGGGGGCGCGTACTTGTACAACAAATAA
AAATGACACTTTTGTGGAAATAGAAGGTCATGTTTGTATGTATCAATCGT
CACAATCAATCGTCTTCTCAGCAAAAATAACGCGCCTACACAAATGGGAT
CACCTGTCCCCGTCCCTCTTGCCACCCATTTATAATAAATATGCCCCCTA
ACTCAATTTCCTCTTGTACGCACGTAATCGTGCTGGAAACTCGATTACAC
GCCCGATTATTGAAGTGTTTGAAGTGAAAGTCGATGGTCTTGAGTTTTCG
GCAAGGCATTTCAAAATCGTCGATCACATCTACGGGGACTTGAGTCAGAA
AAGTGCAAGGTTTTCAGTGTGGCCCGCTACAGAAGCTCTTGTAAACAAGA
ACCTGACCGATGGCTCAGGCTCACGCCAACGAAACATGTTGAGAGTGTCG
GCACGAAGTGGACCGATCCACTTGTTGATTTTATCTTGGCGTGACTGAAT
CACTCGAAGGTGTGCTGTGTACGACCTTGTTGGTACATCTCATCCTGAGG
GAGTACAGCAACAGAAGGCATCCAAGCACCACTGAAGTGCCATGTAGGGC
AATAAGGGGAAGGGAAACCCATCATTTGAGCCGTGGCGAACTTTTGCATG
CCTATTTGCAGGGCCAGCTGTTTACCTGTGCTGAGCCATGTCTTCCATCC
TGGTCGTTCGTTCAGACGAAAGCACGAACGCCCGCTTGTCCTGATAGTGA
GCAGCTTTGAACGACAATTTTAACGCACCCTTTCATTTCCACCTTCTTTC
GCCGAATGTACGGCGCCTCGACTCTTTTGCAGACGATGCAGAAGAGACTT
GCGAAAGAACGTGCCAAGCGCGAACAAGAGAAGAAGCTAGCCAAGCTGCT
CGGTTTCAAGGGCGGTAGAGGCAGAGGAAGATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1282:1096..8979+

>mRNA_H-canaliculatus_F_contig1282.2353.1 ID=mRNA_H-canaliculatus_F_contig1282.2353.1|Name=mRNA_H-canaliculatus_F_contig1282.2353.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=378bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1282:1096..8979+ (Hapterophycus canaliculatus Oshoro5f female)
GCATCCCAAGGGTTACTGCTCGTCTCGTTCGCATCCAAACACCTGTGGTA
TGAAAAAACATCATTGCTGGAGGAAGGACAACAGGAGGCATCCCAAGGGT
TACTGCTCGTCTCGTTCGCATCCAAACACCTGTGGTATGAAAAAACATCA
TTGCTGGAGGAAGGACAACAGGAGACGATGCAGAAGAGACTTGCGAAAGA
ACGTGCCAAGCGCGAACAAGAGAAGAAGCTAGCCAAGCTGCTCGGTTTCA
AGGGCGGTAGAGGCAGAGGAAGATGAACGATGCAGAAGAGACTTGCGAAA
GAACGTGCCAAGCGCGAACAAGAGAAGAAGCTAGCCAAGCTGCTCGGTTT
CAAGGGCGGTAGAGGCAGAGGAAGATGA
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