mRNA_H-canaliculatus_F_contig12815.2350.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12815.2350.1
Unique NamemRNA_H-canaliculatus_F_contig12815.2350.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12815.2350.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.440e-23
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:    4 GGTVPIQLLEFLDFLDRFHGRGAVILSDNPWMEPPESTVMEGSMAIRGYFVDLFAGPSQVQRNNLKIVVVGRASAGKTSLCRSMKAKKADPTGD 285
            GG +P QL   LD LDR  G G + L DNPW EPP S V +G  +IRGYF DL+   S+VQRN++KI++VG+  AGKTSL +SMKA  A PTG+
Sbjct:  175 GGQLPSQLCRLLDVLDRATG-GILGLDDNPWAEPPASIVSKGPTSIRGYFEDLYVESSRVQRNSVKIILVGQEGAGKTSLRQSMKANAAIPTGE 267
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BLAST of mRNA_H-canaliculatus_F_contig12815.2350.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.080e-14
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   97 MEPPESTVMEGSMAIRGYFVDLFAGPSQVQRNNLKIVVVGRASAGKTSLCRSMKAKKADPTGD 285
            ++  E  V +G+  IRGYF DLF+ P ++QRN++K+++VG+  AGKTSLCRSMKA KA PTG+
Sbjct:   27 LDGAEPIVAKGAKGIRGYFEDLFSEPCRIQRNSVKVILVGQEGAGKTSLCRSMKANKAAPTGE 89
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BLAST of mRNA_H-canaliculatus_F_contig12815.2350.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 5.750e-7
Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:   70 AVILSDNPWMEPPESTVMEGSMAIRGYFVDLF----AGPSQVQRNNLKIVVVGRASAGKTSLCRSMKAKKADPT 279
            ++ L  NPW+ PPE  V  G  A++ Y VD+     AG        LK+V+VG ASAGKTSL  S+ A +  PT
Sbjct:   25 SLYLHGNPWIMPPEGVVEAGLTAVKRYLVDVREAKKAGADVTSLQLLKVVLVGSASAGKTSLMHSIIAGRGSPT 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12815.2350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUC9_ECTSI3.440e-2356.38LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L846_9PHAE2.080e-1455.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8T1_9PHAE5.750e-743.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12815contigH-canaliculatus_F_contig12815:494..1171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.9e-22
Seed eggNOG ortholog2880.D7FUC3
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size286
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.077579-CDS-H-canaliculatus_F_contig12815:493..7321622929012.077579-CDS-H-canaliculatus_F_contig12815:493..732Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12815 494..732 +
1696845646.7516465-CDS-H-canaliculatus_F_contig12815:493..7321696845646.7516465-CDS-H-canaliculatus_F_contig12815:493..732Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12815 494..732 +
1622929012.0890746-CDS-H-canaliculatus_F_contig12815:1124..11701622929012.0890746-CDS-H-canaliculatus_F_contig12815:1124..1170Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12815 1125..1170 +
1696845646.7653754-CDS-H-canaliculatus_F_contig12815:1124..11701696845646.7653754-CDS-H-canaliculatus_F_contig12815:1124..1170Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12815 1125..1170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12815.2350.1prot_H-canaliculatus_F_contig12815.2350.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12815 494..1170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12815.2350.1

>prot_H-canaliculatus_F_contig12815.2350.1 ID=prot_H-canaliculatus_F_contig12815.2350.1|Name=mRNA_H-canaliculatus_F_contig12815.2350.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
SGGTVPIQLLEFLDFLDRFHGRGAVILSDNPWMEPPESTVMEGSMAIRGY
FVDLFAGPSQVQRNNLKIVVVGRASAGKTSLCRSMKAKKADPTGD
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mRNA from alignment at H-canaliculatus_F_contig12815:494..1171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12815.2350.1 ID=mRNA_H-canaliculatus_F_contig12815.2350.1|Name=mRNA_H-canaliculatus_F_contig12815.2350.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12815:494..1171+ (Hapterophycus canaliculatus Oshoro5f female)
TCAGGCGGGACGGTTCCTATTCAGCTGCTCGAGTTTTTGGACTTCCTTGA
TCGGTTTCATGGAAGAGGCGCTGTCATTCTCAGCGATAATCCGTGGATGG
AACCGCCAGAATCCACCGTGATGGAAGGGTCCATGGCCATCCGAGGCTAT
TTTGTAGACCTTTTCGCAGGACCTTCCCAGGTCCAGCGTAACAACCTGAA
GATCGTCGTCGTCGGGAGAGCAAGCGCGGGGAAGACAAGGTGGGTGCTCG
TTTCCTCTTCGCCGTAACTGAGCTACGCGTTGCCAGCAGGGAGACTGGCC
GTAACATTGGTTGTTGGCAGGGATTATCTGACCAGATCAAACAGTTTGAA
TCGAGGAGCATGGCCCCTATCGCTTGCCTGAAGGTGGTTGGAAACTTGCT
GGTTGAATTTCCCGTAGATGGTTGAAAATTCGCCTGTGTGACTGCTTCAG
GTTTCACCATGACTTTCCGAACTTGTGTGTCCTGACTTGCCGTTTTCAGC
AAGCAGCTTGCCGAGGGCTTAGAGAGGTATCGTGCTGAAGTCCGGTTCCG
TGGAAGCAGATTGCAAACTGACGTTCGATTGTGCGACTCTCCGTGCCGCC
TTCCACCATGTCTTTTTCCGTCACGGTGTAGCTTGTGCCGCAGCATGAAG
GCCAAGAAAGCTGATCCCACTGGCGATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12815:494..1171+

>mRNA_H-canaliculatus_F_contig12815.2350.1 ID=mRNA_H-canaliculatus_F_contig12815.2350.1|Name=mRNA_H-canaliculatus_F_contig12815.2350.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12815:494..1171+ (Hapterophycus canaliculatus Oshoro5f female)
TCAGGCGGGACGGTTCCTATTCAGCTGCTCGAGTTTTTGGACTTCCTTGA
TCGGTTTCATGGAAGAGGCGCTGTCATTCTCAGCGATAATCCGTGGATGG
AACCGCCAGAATCCACCGTGATGGAAGGGTCCATGGCCATCCGAGGCTAT
TTTGTAGACCTTTTCGCAGGACCTTCCCAGGTCCAGCGTAACAACCTGAA
GATCGTCGTCGTCGGGAGAGCAAGCGCGGGGAAGACAAGTCAGGCGGGAC
GGTTCCTATTCAGCTGCTCGAGTTTTTGGACTTCCTTGATCGGTTTCATG
GAAGAGGCGCTGTCATTCTCAGCGATAATCCGTGGATGGAACCGCCAGAA
TCCACCGTGATGGAAGGGTCCATGGCCATCCGAGGCTATTTTGTAGACCT
TTTCGCAGGACCTTCCCAGGTCCAGCGTAACAACCTGAAGATCGTCGTCG
TCGGGAGAGCAAGCGCGGGGAAGACAAGCTTGTGCCGCAGCATGAAGGCC
AAGAAAGCTGATCCCACTGGCGATCTTGTGCCGCAGCATGAAGGCCAAGA
AAGCTGATCCCACTGGCGAT
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