mRNA_H-canaliculatus_F_contig12814.2349.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12814.2349.1
Unique NamemRNA_H-canaliculatus_F_contig12814.2349.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12814.2349.1 vs. uniprot
Match: D7FXN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN3_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 4.870e-22
Identity = 105/260 (40.38%), Postives = 134/260 (51.54%), Query Frame = 1 
Query:    1 RPERPGKAKRTCPPPRTANDAFSVRSFGSSSS--SAAAAPFLNLRRAGAGS-AGGVGRGGCRFGGGTGRPLKCQRCGSDRVHLFATTATDSSRHPSLI---HPRGK-------HAGNSKKRRGSPPRGSRRTHGV--FAGSGGGYSGGCGEGGVGGGAGRLSPALVSDHPEHRSRTPQVSS---PDKVKLSGWSDTGRTVPVAAATATSPTPPFFGRRGGKNATNRAGGPQGGTPAVRSGRRASVRPPVGNGLPVPAHTP 726
            RPERPG+  RTCPPPRT +DAFSV SF SS S  S  ++P  N +RAG G+ + GVGR          RP+KCQRCGS RV LFATT   + R P+ +    PRG         AG++++  G    G  R  G   ++ +G G S  C +        RL  A VS+    R    +V+S   P +  L+G SDTGR      + A         R G +NA NR  G   G   V S R+ASVRPP G G+ +PA  P
Sbjct:  416 RPERPGQMNRTCPPPRTPSDAFSVVSFSSSGSALSPRSSPPANGQRAGGGTCSSGVGR----------RPVKCQRCGSGRVKLFATTVVSARRSPTHLLRQPPRGASSDSYCARAGHTRENAGG---GGSRNGGTPSYSVAGSGSSTSCTD--------RLRLAPVSNRHTQRGNARKVTSMLSPRRKNLAGLSDTGRISTGGVSLAEL-------RGGERNAANRPRGLMDGAAVVGS-RKASVRPPPGGGIIIPAPKP 646
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BLAST of mRNA_H-canaliculatus_F_contig12814.2349.1 vs. uniprot
Match: A0A6H5L7Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q0_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.020e-16
Identity = 102/253 (40.32%), Postives = 125/253 (49.41%), Query Frame = 1 
Query:    1 RPERPGKAKRTCPPPRTANDAFSVRSFGSSSS--SAAAAPFLNLRRAGAGS-AGGVGRGGCRFGGGTGRPLKCQRCGSDRVHLFATTATDSSRHPSLIHPRGKHAGNSKKRRGSPPRGSRRTHGVFAGSGGGYSGG----CGEG-GVGGGAGRLSPALVSDHPEHRSRTPQVSS---PDKVKLSGWSDTGRTVPVAAATATSPTPPFFGRRGGKNATNRAGGPQGGTPAVRSGRRASVRPPVGNGLPVPAHTP 726
            RPERPG+  RT PPPR   DAFSV SF SS S  S  ++P  N +R G G  + GVGR          RP+KCQRCGS RV LFATT   + R P+ +  R  H+G S     +  R +R   G   G GG  +GG    C  G G      RL    VS+  + +  T  V+S   P +  L+G SDTGR                  R G +NA NR  G   G   V S R+ASVRPP G G+ +PA  P
Sbjct:  501 RPERPGQMNRTRPPPRMPRDAFSVVSFSSSGSARSPCSSPPANGQRVGGGPCSSGVGR----------RPVKCQRCGSGRVKLFATTVASARRSPTHLL-RQPHSGASSDSFCARARHTRENAG---GGGGSRNGGIPTYCDAGSGSRSSTDRLRLGPVSNRHKQQRNTHLVTSMLSPWRKNLAGLSDTGRIGTGGELLGEL-------RGGERNAANRPRGLIDGAAVVGS-RKASVRPPPGGGIIIPAPKP 731
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12814.2349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXN3_ECTSI4.870e-2240.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7Q0_9PHAE1.020e-1640.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12814contigH-canaliculatus_F_contig12814:2221..2946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size726
Cds size726
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.0323436-CDS-H-canaliculatus_F_contig12814:2220..29461622929012.0323436-CDS-H-canaliculatus_F_contig12814:2220..2946Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12814 2221..2946 +
1696845646.7424743-CDS-H-canaliculatus_F_contig12814:2220..29461696845646.7424743-CDS-H-canaliculatus_F_contig12814:2220..2946Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12814 2221..2946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12814.2349.1prot_H-canaliculatus_F_contig12814.2349.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12814 2221..2946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12814.2349.1

>prot_H-canaliculatus_F_contig12814.2349.1 ID=prot_H-canaliculatus_F_contig12814.2349.1|Name=mRNA_H-canaliculatus_F_contig12814.2349.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=242bp
RPERPGKAKRTCPPPRTANDAFSVRSFGSSSSSAAAAPFLNLRRAGAGSA
GGVGRGGCRFGGGTGRPLKCQRCGSDRVHLFATTATDSSRHPSLIHPRGK
HAGNSKKRRGSPPRGSRRTHGVFAGSGGGYSGGCGEGGVGGGAGRLSPAL
VSDHPEHRSRTPQVSSPDKVKLSGWSDTGRTVPVAAATATSPTPPFFGRR
GGKNATNRAGGPQGGTPAVRSGRRASVRPPVGNGLPVPAHTP
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mRNA from alignment at H-canaliculatus_F_contig12814:2221..2946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12814.2349.1 ID=mRNA_H-canaliculatus_F_contig12814.2349.1|Name=mRNA_H-canaliculatus_F_contig12814.2349.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12814:2221..2946+ (Hapterophycus canaliculatus Oshoro5f female)
AGGCCTGAGCGCCCCGGGAAGGCGAAGCGAACCTGCCCACCCCCGCGGAC
AGCCAACGACGCGTTCTCCGTGCGCAGCTTCGGTTCTTCGTCTTCTTCTG
CTGCTGCTGCCCCTTTTCTGAACCTCCGCCGAGCGGGGGCAGGAAGCGCT
GGGGGTGTCGGTCGTGGCGGCTGCCGCTTCGGCGGCGGCACGGGGAGGCC
CCTGAAATGCCAGCGATGCGGGTCGGACAGGGTGCATCTATTCGCAACAA
CGGCAACCGACTCTTCCCGGCACCCGTCCCTTATCCATCCTCGTGGCAAG
CACGCCGGAAACAGCAAGAAAAGGAGAGGCTCCCCGCCGAGAGGTAGCCG
GCGGACACACGGTGTTTTCGCGGGTAGCGGCGGCGGCTACAGCGGTGGAT
GCGGAGAAGGCGGTGTTGGCGGCGGCGCGGGCCGGCTTTCGCCAGCCCTG
GTGAGCGACCATCCCGAGCATCGCTCGAGAACACCGCAGGTGTCCTCTCC
GGACAAAGTCAAGCTTTCAGGGTGGAGCGATACGGGCCGAACCGTGCCGG
TGGCGGCAGCAACGGCAACGTCGCCGACCCCGCCGTTTTTCGGTCGCCGT
GGTGGGAAGAACGCGACGAACCGCGCGGGCGGACCACAAGGGGGAACGCC
GGCGGTGCGGTCGGGCAGAAGAGCATCCGTGAGGCCGCCAGTGGGCAACG
GCCTGCCTGTGCCCGCCCACACCCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12814:2221..2946+

>mRNA_H-canaliculatus_F_contig12814.2349.1 ID=mRNA_H-canaliculatus_F_contig12814.2349.1|Name=mRNA_H-canaliculatus_F_contig12814.2349.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1452bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12814:2221..2946+ (Hapterophycus canaliculatus Oshoro5f female)
AGGCCTGAGCGCCCCGGGAAGGCGAAGCGAACCTGCCCACCCCCGCGGAC
AGCCAACGACGCGTTCTCCGTGCGCAGCTTCGGTTCTTCGTCTTCTTCTG
CTGCTGCTGCCCCTTTTCTGAACCTCCGCCGAGCGGGGGCAGGAAGCGCT
GGGGGTGTCGGTCGTGGCGGCTGCCGCTTCGGCGGCGGCACGGGGAGGCC
CCTGAAATGCCAGCGATGCGGGTCGGACAGGGTGCATCTATTCGCAACAA
CGGCAACCGACTCTTCCCGGCACCCGTCCCTTATCCATCCTCGTGGCAAG
CACGCCGGAAACAGCAAGAAAAGGAGAGGCTCCCCGCCGAGAGGTAGCCG
GCGGACACACGGTGTTTTCGCGGGTAGCGGCGGCGGCTACAGCGGTGGAT
GCGGAGAAGGCGGTGTTGGCGGCGGCGCGGGCCGGCTTTCGCCAGCCCTG
GTGAGCGACCATCCCGAGCATCGCTCGAGAACACCGCAGGTGTCCTCTCC
GGACAAAGTCAAGCTTTCAGGGTGGAGCGATACGGGCCGAACCGTGCCGG
TGGCGGCAGCAACGGCAACGTCGCCGACCCCGCCGTTTTTCGGTCGCCGT
GGTGGGAAGAACGCGACGAACCGCGCGGGCGGACCACAAGGGGGAACGCC
GGCGGTGCGGTCGGGCAGAAGAGCATCCGTGAGGCCGCCAGTGGGCAACG
GCCTGCCTGTGCCCGCCCACACCCCTAGGCCTGAGCGCCCCGGGAAGGCG
AAGCGAACCTGCCCACCCCCGCGGACAGCCAACGACGCGTTCTCCGTGCG
CAGCTTCGGTTCTTCGTCTTCTTCTGCTGCTGCTGCCCCTTTTCTGAACC
TCCGCCGAGCGGGGGCAGGAAGCGCTGGGGGTGTCGGTCGTGGCGGCTGC
CGCTTCGGCGGCGGCACGGGGAGGCCCCTGAAATGCCAGCGATGCGGGTC
GGACAGGGTGCATCTATTCGCAACAACGGCAACCGACTCTTCCCGGCACC
CGTCCCTTATCCATCCTCGTGGCAAGCACGCCGGAAACAGCAAGAAAAGG
AGAGGCTCCCCGCCGAGAGGTAGCCGGCGGACACACGGTGTTTTCGCGGG
TAGCGGCGGCGGCTACAGCGGTGGATGCGGAGAAGGCGGTGTTGGCGGCG
GCGCGGGCCGGCTTTCGCCAGCCCTGGTGAGCGACCATCCCGAGCATCGC
TCGAGAACACCGCAGGTGTCCTCTCCGGACAAAGTCAAGCTTTCAGGGTG
GAGCGATACGGGCCGAACCGTGCCGGTGGCGGCAGCAACGGCAACGTCGC
CGACCCCGCCGTTTTTCGGTCGCCGTGGTGGGAAGAACGCGACGAACCGC
GCGGGCGGACCACAAGGGGGAACGCCGGCGGTGCGGTCGGGCAGAAGAGC
ATCCGTGAGGCCGCCAGTGGGCAACGGCCTGCCTGTGCCCGCCCACACCC
CT
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