mRNA_H-canaliculatus_F_contig12813.2348.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12813.2348.1
Unique NamemRNA_H-canaliculatus_F_contig12813.2348.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12813.2348.1 vs. uniprot
Match: D7FRV7_ECTSI (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV7_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 4.280e-51
Identity = 86/144 (59.72%), Postives = 107/144 (74.31%), Query Frame = 1 
Query:   73 EETRKLCYIRCAECKPDVDLCVGCFFAGQEPGEHKKTHKYRVMDKLNKPIFSEDWTAAEELALVDHTKRMGMGSWEELSDMV--------RGILHEKLDEDSAYNDSVLPPHYLRTREDGSVEEVPIPPTHPHKCSPELRGVKV 480
            ++ + LCYIRCAECK  VDLCV CFF+G EP +HKKTH YRVMDKL+KPI+SE W+A EELAL D T++ G+G+WEE++D+         + +    LD   A  DSVLPPHYLR REDG+VE+VPIPPTHP +C P  RGVK+
Sbjct:   18 KDIKFLCYIRCAECKDVVDLCVSCFFSGSEPRQHKKTHSYRVMDKLHKPIYSEGWSAVEELALADLTRKRGLGAWEEIADLKMFYRRKSEKELNARYLDTYLATYDSVLPPHYLREREDGTVEKVPIPPTHPERCRPSQRGVKL 161
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12813.2348.1 vs. uniprot
Match: A0A6H5JL08_9PHAE (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL08_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.930e-45
Identity = 84/140 (60.00%), Postives = 100/140 (71.43%), Query Frame = 1 
Query:   88 LCYIRCAECKPDVDLCVGCFFAGQEPGEHKKTHKYRVMDKLNKPIFSEDWTAAEELALVDHTKRMGMGSWEELSDMVRGIL-HEKLDEDSAYND-------SVLPPHYLRTREDGS-VEEVPIPPTHPHKCSPELRGVKV 480
            LCYIRC ECK +VDLC  CFFAG EP  HKKTH YRVMDKL+KPIF+EDWTAAEEL+L+D  K+MG+G+WEE+SD       H   + ++ Y D       SVLPP+YL+ R DGS  ++VPIP THP  C P  RGVKV
Sbjct:   60 LCYIRCEECKQEVDLCAACFFAGMEPLGHKKTHSYRVMDKLDKPIFTEDWTAAEELSLMDQVKKMGLGAWEEISDSKLFYRRHSSSELNARYLDTYLSQYGSVLPPYYLKHRPDGSGADKVPIPLTHPANCPPNQRGVKV 199
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12813.2348.1 vs. uniprot
Match: UPI0003F0E8D6 (transcriptional adapter 2-beta-like isoform X1 n=2 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0E8D6)

HSP 1 Score: 86.7 bits (213), Expect = 6.680e-17
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   97 IRCAECKPDVDLCVGCFFAGQEPGEHKKTHKYRVMDKLNKPIFSEDWTAAEELALVDHTKRMGMGSWEELSDMV 318
            ++CAEC  D DLC+ CF  G E G HKK HKY+++D  N  IF+EDWTA EEL L+D  ++ G GSW +++D +
Sbjct:   22 VKCAECS-DFDLCLQCFSGGAEMGHHKKDHKYQLIDNGNFSIFNEDWTAHEELLLLDGIEQYGFGSWADIADHI 94
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12813.2348.1 vs. uniprot
Match: A0A2T9YVQ0_9FUNG (Transcriptional adapter 2 n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YVQ0_9FUNG)

HSP 1 Score: 86.7 bits (213), Expect = 7.190e-17
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:   55 CTAVQAEETRKLCYIRCAECKPDVDLCVGCFFAGQEPGEHKKTHKYRVMDKLNKPIFSEDWTAAEELALVDHTKRMGMGSWEELSDMVRGILHEKLDE 348
            C   QA  T ++  I CAEC P+ DLCV CF  G E G HK+ H Y V+ K   PIFS DWTA EEL L+D   + GMG+WEE++  V     E+ ++
Sbjct:   27 CDECQANLT-EIVKISCAEC-PEFDLCVSCFAKGVELGSHKREHAYSVVSKHTFPIFSIDWTADEELLLIDGLIQFGMGNWEEVATYVTSKTKEECEQ 122
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12813.2348.1 vs. uniprot
Match: A0A507CK27_9FUNG (Transcriptional adapter 2 n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CK27_9FUNG)

HSP 1 Score: 86.7 bits (213), Expect = 8.140e-17
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:   97 IRCAECKPDVDLCVGCFFAGQEPGEHKKTHKYRVMDKLNKPIFSEDWTAAEELALVDHTKRMGMGSWEELSD 312
            IRCA C PD DLCV CF +G+E G H+  H YRV+  L+ PIF +DWTA EEL LV+  +  GMG+W+++S+
Sbjct:   45 IRCAAC-PDYDLCVECFASGKETGTHQNDHPYRVIQVLDFPIFDKDWTAEEELLLVEGLEIFGMGNWDQVSE 115
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12813.2348.1 vs. uniprot
Match: A0A507D1U5_9FUNG (Uncharacterized protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507D1U5_9FUNG)

HSP 1 Score: 85.1 bits (209), Expect = 3.230e-16
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   97 IRCAECKPDVDLCVGCFFAGQEPGEHKKTHKYRVMDKLNKPIFSEDWTAAEELALVDHTKRMGMGSWEELSD 312
            IRCA C  D DLCV CF  G+E G HK  H YRV+  L+ PIF +DWTA EEL LV+  +  G+G+W+++SD
Sbjct:  241 IRCAACT-DYDLCVECFSTGKESGTHKNDHPYRVIQVLDFPIFQKDWTAEEELLLVEGLEIFGLGNWDQVSD 311
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12813.2348.1 vs. uniprot
Match: UPI00109BCCF6 (transcriptional adapter 2-beta n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BCCF6)

HSP 1 Score: 84.3 bits (207), Expect = 3.350e-16
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:   88 LCYIRCAECKPDVDLCVGCFFAGQEPGEHKKTHKYRVMDKLNKPIFSEDWTAAEELALVDHTKRMGMGSWEELSDMV 318
            L  +RCAEC  D DLC+ CF  G E GEHK+ HKY+++D  + P+FSE+W A EE  L+D  ++ G G+W++++D +
Sbjct:   28 LLRVRCAECS-DFDLCLQCFCCGAEMGEHKREHKYQLIDGGSFPLFSEEWAAEEETLLLDAIEQHGFGNWDDIADHI 103
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12813.2348.1 vs. uniprot
Match: A0A4P9ZPH0_9FUNG (Transcriptional adapter 2 n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZPH0_9FUNG)

HSP 1 Score: 84.0 bits (206), Expect = 7.130e-16
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   97 IRCAECKPDVDLCVGCFFAGQEPGEHKKTHKYRVMDKLNKPIFSEDWTAAEELALVDHTKRMGMGSWEELSDMVR 321
            IRCAEC PD D CV CF  G E G HK  HKY+V+     PIF+EDW+A EEL L++  ++ GMG+W ++++ VR
Sbjct:   27 IRCAEC-PDFDTCVTCFSQGIELGPHKNNHKYQVVTPNFFPIFTEDWSADEELLLIEGIQQFGMGNWMDIAEHVR 100
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12813.2348.1 vs. uniprot
Match: A0A7S2H024_9STRA (Transcriptional adapter n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H024_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.060e-15
Identity = 47/117 (40.17%), Postives = 72/117 (61.54%), Query Frame = 1 
Query:   97 IRCAECKPDVDLCVGCFFAGQEPGEHKKTHKYRVMDKLNK-PIFSEDWTAAEELALVDHTKRMGMGSWEELSDMV-----RGILHEKLDEDSAYNDSVLPPHYL-RTREDGSVEEVP 426
            I CAEC P+ +LC+ CF +G E   H+ TH+YRV D  +   IF +DW+AAEELAL+D  ++ G+G+W++++D V     R      LD+    + ++LPP  L R +    +E+VP
Sbjct:   41 IVCAEC-PNFELCLHCFSSGAEVSPHRNTHRYRVRDNPHAHKIFRDDWSAAEELALLDAIEKHGVGNWKDVADQVGSKTERRCEEHYLDDYLGVHGAILPPITLKRNKSTDELEQVP 156
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12813.2348.1 vs. uniprot
Match: A0A7S3E0F9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S3E0F9_9CHLO)

HSP 1 Score: 80.5 bits (197), Expect = 1.550e-15
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   97 IRCAECKPDVDLCVGCFFAGQEPGEHKKTHKYRVMDKLNKPIFSEDWTAAEELALVDHTKRMGMGSWEELSDMV 318
            IRCAEC    +LCV CF  G     HK TH+YRV+D L+ PIFS+DW A EE  L++     G G+W E+++ V
Sbjct:    5 IRCAECVEPFELCVQCFSVGASLNPHKPTHRYRVLDDLSFPIFSDDWGADEETRLLEALSSFGPGNWSEVAEHV 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12813.2348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRV7_ECTSI4.280e-5159.72Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JL08_9PHAE1.930e-4560.00Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0003F0E8D66.680e-1751.35transcriptional adapter 2-beta-like isoform X1 n=2... [more]
A0A2T9YVQ0_9FUNG7.190e-1746.94Transcriptional adapter 2 n=1 Tax=Smittium simulii... [more]
A0A507CK27_9FUNG8.140e-1754.17Transcriptional adapter 2 n=1 Tax=Synchytrium micr... [more]
A0A507D1U5_9FUNG3.230e-1654.17Uncharacterized protein n=2 Tax=Synchytrium endobi... [more]
UPI00109BCCF63.350e-1646.75transcriptional adapter 2-beta n=1 Tax=Exaiptasia ... [more]
A0A4P9ZPH0_9FUNG7.130e-1652.00Transcriptional adapter 2 n=1 Tax=Dimargaris crist... [more]
A0A7S2H024_9STRA1.060e-1540.17Transcriptional adapter n=1 Tax=Dictyocha speculum... [more]
A0A7S3E0F9_9CHLO1.550e-1548.65Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12813contigH-canaliculatus_F_contig12813:237..2260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.7
Seed ortholog evalue6.8e-44
Seed eggNOG ortholog2880.D7FRV7
Preferred nameTADA2A
KEGG rclassRC00505,RC00738,RC02795
KEGG koko:K00457,ko:K03012,ko:K10391,ko:K11314
KEGG ReactionR00435,R00441,R00442,R00443,R01372,R02521
KEGG Pathwayko00130,ko00230,ko00240,ko00350,ko00360,ko01100,ko03020,ko05016,ko05169,map00130,map00230,map00240,map00350,map00360,map01100,map03020,map05016,map05169
KEGG ModuleM00044,M00180
GOsGO:0000018,GO:0000123,GO:0000124,GO:0000125,GO:0000183,GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0000981,GO:0001786,GO:0001932,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005694,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006974,GO:0006996,GO:0007049,GO:0007155,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009266,GO:0009299,GO:0009405,GO:0009409,GO:0009628,GO:0009631,GO:0009719,GO:0009725,GO:0009733,GO:0009735,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010520,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010810,GO:0010811,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0022610,GO:0030155,GO:0030447,GO:0031056,GO:0031058,GO:0031063,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031505,GO:0031589,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032502,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035065,GO:0035066,GO:0035327,GO:0035690,GO:0036211,GO:0040007,GO:0040020,GO:0040029,GO:0042127,GO:0042221,GO:0042325,GO:0042493,GO:0042710,GO:0042789,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043565,GO:0043708,GO:0043709,GO:0043900,GO:0043902,GO:0043966,GO:0043967,GO:0044010,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0045229,GO:0045785,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046695,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0060255,GO:0060631,GO:0065007,GO:0065008,GO:0070013,GO:0070461,GO:0070887,GO:0071214,GO:0071470,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0072341,GO:0072686,GO:0080090,GO:0090043,GO:0090304,GO:0090311,GO:0090605,GO:0090609,GO:0097159,GO:0097659,GO:0104004,GO:0140110,GO:1900187,GO:1900189,GO:1900190,GO:1900192,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901983,GO:1901985,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1905368,GO:1990234,GO:1990414,GO:2000112,GO:2000113,GO:2000241,GO:2000756,GO:2000758,GO:2001141,GO:2001252
EggNOG free text desc.positive regulation of histone acetylation
EggNOG OGsCOG5114@1,KOG0457@2759
EC1.13.11.27
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size490
Cds size489
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12813.2348.1prot_H-canaliculatus_F_contig12813.2348.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12813 237..2260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929011.8689852-CDS-H-canaliculatus_F_contig12813:236..3231622929011.8689852-CDS-H-canaliculatus_F_contig12813:236..323Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12813 237..323 +
1696845646.6976125-CDS-H-canaliculatus_F_contig12813:236..3231696845646.6976125-CDS-H-canaliculatus_F_contig12813:236..323Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12813 237..323 +
1622929011.911672-CDS-H-canaliculatus_F_contig12813:862..10041622929011.911672-CDS-H-canaliculatus_F_contig12813:862..1004Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12813 863..1004 +
1696845646.7131414-CDS-H-canaliculatus_F_contig12813:862..10041696845646.7131414-CDS-H-canaliculatus_F_contig12813:862..1004Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12813 863..1004 +
1622929011.921945-CDS-H-canaliculatus_F_contig12813:1551..17141622929011.921945-CDS-H-canaliculatus_F_contig12813:1551..1714Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12813 1552..1714 +
1696845646.7220948-CDS-H-canaliculatus_F_contig12813:1551..17141696845646.7220948-CDS-H-canaliculatus_F_contig12813:1551..1714Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12813 1552..1714 +
1622929011.9350648-CDS-H-canaliculatus_F_contig12813:2163..22601622929011.9350648-CDS-H-canaliculatus_F_contig12813:2163..2260Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12813 2164..2260 +
1696845646.7323935-CDS-H-canaliculatus_F_contig12813:2163..22601696845646.7323935-CDS-H-canaliculatus_F_contig12813:2163..2260Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12813 2164..2260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12813.2348.1

>prot_H-canaliculatus_F_contig12813.2348.1 ID=prot_H-canaliculatus_F_contig12813.2348.1|Name=mRNA_H-canaliculatus_F_contig12813.2348.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=163bp
VLHSVGQARRAKAEAVSGCTAVQAEETRKLCYIRCAECKPDVDLCVGCFF
AGQEPGEHKKTHKYRVMDKLNKPIFSEDWTAAEELALVDHTKRMGMGSWE
ELSDMVRGILHEKLDEDSAYNDSVLPPHYLRTREDGSVEEVPIPPTHPHK
CSPELRGVKVSL*
back to top

mRNA from alignment at H-canaliculatus_F_contig12813:237..2260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12813.2348.1 ID=mRNA_H-canaliculatus_F_contig12813.2348.1|Name=mRNA_H-canaliculatus_F_contig12813.2348.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2024bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12813:237..2260+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCTACACAGCGTCGGACAAGCACGCAGAGCAAAGGCCGAAGCTGTGTC
GGGGTGTACTGCAGTTCAAGCGGAAGAGACGCGTAAGGTGACCTTCGTGC
GATCTGTGAAGGCCAGATGAGTAGTATACCACCCCCTCCAAAGTGTGTTA
CGGCAGTTCCTGCACCTTCTCACGCCTCCAGTTCTCAACGAGGCTATTTA
ATCTAGATTGTAGGAGAGCGCGGATCTGCAGTGGGTTGGCGAACCTTTAC
ATTGTCAGGGGCTTGATCCACCGAAATGTTTCGCCAGTCGATACGCACCG
TTTCTGGTGTTGTTGGTGGAGCCACACCCGCCCGCCCCGTCATGGGTTGG
GTTGGGATCGATCAGGAACATGCTCGGTTCGCAAGGAGTAAATACGCGGA
TAAACTATCAGAAGAGAGACCACCCATCTCCGCCGTCCTTTTCTTGCGTG
CACCGCGTGGTTCTGCGGCGTTCTAACGGATAGCTCTGGCGGCAACATCG
AGTTCGTCGTTAGGGGTTCGTTGTGCTGGGAATATTGTTTGCATCTTGCT
TTTATACCGCTAACTTATGTACCGCTAACAATGATGGTCGACCGTGCTGC
GTTCCATGTGTTTGGTCTGTTTGAAGTTGTGCTACATTCGTTGCGCGGAG
TGTAAGCCGGACGTGGACCTGTGCGTGGGCTGCTTCTTCGCCGGCCAAGA
GCCGGGCGAGCACAAGAAGACACACAAGTACCGCGTCATGGACAAGCTCA
ACAAGCCCATCTTCTCAGGTATTTACCTATACACGTGCGTCCTCGTTTGT
GCTACTTTACCGTTTGCTCTTGTTGGTGCAAGCGTGTGCAATTTGCCGCC
CACACATGTTAGAGGGCGCCACCGCAAGCAGCGGCGGTCAGGGCCGCGAC
AGTGGCAGGGACGGTGCCCCGTCTCCGAACGGAATGCGGTCTCATGACCA
CAAGACAAACATCAAAATGAGTTCTATTATACCAGGCACACACCCATGCT
TGACGGTCCCACCCACCCCCGCACTCGAAACGTGCAGTGTTGGTGGAACG
AAGGCGAGCAGGGACTTGAGGGTGAAGCTGGGGAAGTATGCGGACGAAGT
CGTTGTGCTGAGTTTCAGTCTGTTTTGTTGTTGTTGGTTGCTGAATTCGC
CATTGTAAATACGGCGGCAGCAACGCTTTTGTGTAAGCCGTTCCTTGCTT
TTGACGCGCGCTCTCTCTCTTTTTCTTCTCGTTCCCTCACGGGGGGCTGG
TATTGTACGTCACACGATGCGGTGCTGGCTCGCTATCGCATGAACATGCC
GTGTCATGGGAGCAGAGGATTGGACCGCAGCGGAGGAGCTTGCTCTGGTG
GACCACACGAAGAGAATGGGCATGGGGTCGTGGGAGGAACTGTCCGACAT
GGTGAGAGGAATACTTCATGAGAAACTGGACGAAGATTCTGCGTACAACG
ATTCCGTCCTGCCGCCGCACTACCTCAGGTAAGGGACACGTAGGGATTGA
ACGAACGCTGGAGAGCTCCGTCGGTTGTACCTGGCCATGAAGCACACGGC
CGGGATAAGAAAGAGAGCCGGCGGCGGTTTTCAGAGGAAAATCAATTCTA
GTGAAGGAACGCTAACCGCACCTGCTGCAGGGCTTGTCTTGTACATGCGC
CTGTGGTACTTGTATGTAGGTTTGTTGTTGATCCCTGTCACGCATATGTT
GGTTGTGATTCCCGGCAGAGACACCCGGCCGCTGCCCCGCCGACTTTGGA
TATCTCTCATCCGTTGGGCCTCGTTGATGTTTCTTTTCACACGTCGCGAG
GTGGCGAGCTGAAGATGTTCTTGTCCCCTTTCTGCCAATCCTTGCCTCCT
CCCGTAATGTAGCCCTACCTGTAACCCTACACCGCAAGTAGCCCAAGCCC
TAACCCCAACCGAACCAACTCCCTCAGGACCAGGGAAGACGGTAGTGTGG
AGGAGGTGCCCATCCCGCCGACTCATCCGCACAAGTGCTCCCCGGAGCTC
CGCGGCGTCAAGGTATCCCTATGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12813:237..2260+

>mRNA_H-canaliculatus_F_contig12813.2348.1 ID=mRNA_H-canaliculatus_F_contig12813.2348.1|Name=mRNA_H-canaliculatus_F_contig12813.2348.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=978bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12813:237..2260+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCTACACAGCGTCGGACAAGCACGCAGAGCAAAGGCCGAAGCTGTGTC
GGGGTGTACTGCAGTTCAAGCGGAAGAGACGCGTAAGGTCCTACACAGCG
TCGGACAAGCACGCAGAGCAAAGGCCGAAGCTGTGTCGGGGTGTACTGCA
GTTCAAGCGGAAGAGACGCGTAAGTTGTGCTACATTCGTTGCGCGGAGTG
TAAGCCGGACGTGGACCTGTGCGTGGGCTGCTTCTTCGCCGGCCAAGAGC
CGGGCGAGCACAAGAAGACACACAAGTACCGCGTCATGGACAAGCTCAAC
AAGCCCATCTTCTCAGTTGTGCTACATTCGTTGCGCGGAGTGTAAGCCGG
ACGTGGACCTGTGCGTGGGCTGCTTCTTCGCCGGCCAAGAGCCGGGCGAG
CACAAGAAGACACACAAGTACCGCGTCATGGACAAGCTCAACAAGCCCAT
CTTCTCAGAGGATTGGACCGCAGCGGAGGAGCTTGCTCTGGTGGACCACA
CGAAGAGAATGGGCATGGGGTCGTGGGAGGAACTGTCCGACATGGTGAGA
GGAATACTTCATGAGAAACTGGACGAAGATTCTGCGTACAACGATTCCGT
CCTGCCGCCGCACTACCTCAGAGGATTGGACCGCAGCGGAGGAGCTTGCT
CTGGTGGACCACACGAAGAGAATGGGCATGGGGTCGTGGGAGGAACTGTC
CGACATGGTGAGAGGAATACTTCATGAGAAACTGGACGAAGATTCTGCGT
ACAACGATTCCGTCCTGCCGCCGCACTACCTCAGGACCAGGGAAGACGGT
AGTGTGGAGGAGGTGCCCATCCCGCCGACTCATCCGCACAAGTGCTCCCC
GGAGCTCCGCGGCGTCAAGGTATCCCTATGAGACCAGGGAAGACGGTAGT
GTGGAGGAGGTGCCCATCCCGCCGACTCATCCGCACAAGTGCTCCCCGGA
GCTCCGCGGCGTCAAGGTATCCCTATGA
back to top