mRNA_H-canaliculatus_F_contig12810.2347.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12810.2347.1
Unique NamemRNA_H-canaliculatus_F_contig12810.2347.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12810.2347.1 vs. uniprot
Match: A0A6H5KWL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL4_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.610e-28
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 DVVIIEEAAYMPLRTLSMLLTAAMSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVILE 186
            DV+IIEEAAYMPLRTLSM+L AA SSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVILE
Sbjct:  437 DVIIIEEAAYMPLRTLSMVLAAAHSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVILE 498
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BLAST of mRNA_H-canaliculatus_F_contig12810.2347.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 7.660e-28
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 DVVIIEEAAYMPLRTLSMLLTAAMSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVILE 186
            DV+IIEEAAYMPLRTLSM+L AA SSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRK ILE
Sbjct:  866 DVIIIEEAAYMPLRTLSMVLAAAHSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKFILE 927
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BLAST of mRNA_H-canaliculatus_F_contig12810.2347.1 vs. uniprot
Match: A0A6H5J754_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J754_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.430e-27
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 DVVIIEEAAYMPLRTLSMLLTAAMSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVILE 186
            DV+IIEEAAYMPLRTLSM+L AA SSGTHVIGTYDTHQLQPVC+SSGMSISRDNV+RKVILE
Sbjct:  901 DVIIIEEAAYMPLRTLSMILAAAHSSGTHVIGTYDTHQLQPVCDSSGMSISRDNVDRKVILE 962
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BLAST of mRNA_H-canaliculatus_F_contig12810.2347.1 vs. uniprot
Match: D7G6J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J5_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.260e-26
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 DVVIIEEAAYMPLRTLSMLLTAAMSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVILE 186
            DV+IIEEAAYMPLRTLSM+L AA  SGTHVIGTYDTHQLQPVCESSGMSIS DNV+RKVILE
Sbjct:  625 DVIIIEEAAYMPLRTLSMILAAARCSGTHVIGTYDTHQLQPVCESSGMSISSDNVDRKVILE 686
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12810.2347.1 vs. uniprot
Match: D7FV89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV89_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.260e-26
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 DVVIIEEAAYMPLRTLSMLLTAAMSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVILE 186
            DV+IIEEAAYMPLRTLSM+L AA  SGTHVIGTYDTHQLQPVCESSGMSIS DNV+RKVILE
Sbjct:  844 DVIIIEEAAYMPLRTLSMILAAARCSGTHVIGTYDTHQLQPVCESSGMSISSDNVDRKVILE 905
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BLAST of mRNA_H-canaliculatus_F_contig12810.2347.1 vs. uniprot
Match: A0A6H5L2B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B8_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.260e-26
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 DVVIIEEAAYMPLRTLSMLLTAAMSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVILE 186
            DV+IIEEAAYMPLRTLSM+L AA SSGTHVIGTYDT+QLQPVC+SSGMSISRDNV+RKVILE
Sbjct: 1100 DVIIIEEAAYMPLRTLSMILAAAHSSGTHVIGTYDTNQLQPVCDSSGMSISRDNVDRKVILE 1161
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BLAST of mRNA_H-canaliculatus_F_contig12810.2347.1 vs. uniprot
Match: A0A6H5L909_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L909_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.360e-26
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 DVVIIEEAAYMPLRTLSMLLTAAMSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVILE 186
            DV+IIEEAAYMPLRTL M+L AA SSGTHVIGTYDTHQLQPVC+SSGMSIS+DNV+R+VILE
Sbjct:  548 DVIIIEEAAYMPLRTLRMILAAAHSSGTHVIGTYDTHQLQPVCDSSGMSISKDNVDRRVILE 609
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12810.2347.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.380e-26
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 DVVIIEEAAYMPLRTLSMLLTAAMSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVILE 186
            DV+IIEEAAYMPLRTLSM++ AA  SGTHVIGTYD HQLQPVC+SSGMSISRDNV+RKVILE
Sbjct: 1072 DVIIIEEAAYMPLRTLSMVMAAAYGSGTHVIGTYDVHQLQPVCDSSGMSISRDNVDRKVILE 1133
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BLAST of mRNA_H-canaliculatus_F_contig12810.2347.1 vs. uniprot
Match: A0A6H5JTS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.110e-25
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 DVVIIEEAAYMPLRTLSMLLTAAMSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVILE 186
            DV+IIEEAAYMPLRTLSM+L AA SSGTHVIGTYDTHQLQPVC+SSGMSIS+ NV+R+VILE
Sbjct:  881 DVIIIEEAAYMPLRTLSMILAAAHSSGTHVIGTYDTHQLQPVCDSSGMSISKANVDRRVILE 942
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12810.2347.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.830e-25
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 DVVIIEEAAYMPLRTLSMLLTAAMSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVILE 186
            DV+IIEEAAYMPLRTLSM+L AA  SGTHVIGTYDTHQLQPVC+SSG SIS+DNV+R+VILE
Sbjct: 1037 DVIIIEEAAYMPLRTLSMILAAAHCSGTHVIGTYDTHQLQPVCDSSGRSISKDNVDRRVILE 1098
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12810.2347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWL4_9PHAE1.610e-2893.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQN9_ECTSI7.660e-2891.94Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5J754_9PHAE1.430e-2790.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6J5_ECTSI1.260e-2688.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FV89_ECTSI1.260e-2688.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2B8_9PHAE1.260e-2688.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L909_9PHAE4.360e-2685.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE4.380e-2685.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTS3_9PHAE1.110e-2585.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM3_9PHAE2.830e-2583.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12810contigH-canaliculatus_F_contig12810:314..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue5.9e-18
Seed eggNOG ortholog2880.D7FQN9
EggNOG OGs2E3IK@1,2SAKM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size186
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929009.5664115-CDS-H-canaliculatus_F_contig12810:313..4691622929009.5664115-CDS-H-canaliculatus_F_contig12810:313..469Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12810 314..469 -
1696845646.674592-CDS-H-canaliculatus_F_contig12810:313..4691696845646.674592-CDS-H-canaliculatus_F_contig12810:313..469Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12810 314..469 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929011.7225707-UTR-H-canaliculatus_F_contig12810:469..4991622929011.7225707-UTR-H-canaliculatus_F_contig12810:469..499Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12810 470..499 -
1696845646.6869757-UTR-H-canaliculatus_F_contig12810:469..4991696845646.6869757-UTR-H-canaliculatus_F_contig12810:469..499Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12810 470..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12810.2347.1prot_H-canaliculatus_F_contig12810.2347.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12810 314..469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12810.2347.1

>prot_H-canaliculatus_F_contig12810.2347.1 ID=prot_H-canaliculatus_F_contig12810.2347.1|Name=mRNA_H-canaliculatus_F_contig12810.2347.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=52bp
MPLRTLSMLLTAAMSSGTHVIGTYDTHQLQPVCESSGMSISRDNVNRKVI
LE
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mRNA from alignment at H-canaliculatus_F_contig12810:314..499-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12810.2347.1 ID=mRNA_H-canaliculatus_F_contig12810.2347.1|Name=mRNA_H-canaliculatus_F_contig12810.2347.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=186bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12810:314..499- (Hapterophycus canaliculatus Oshoro5f female)
GACGTCGTCATCATTGAAGAAGCTGCTTATATGCCTCTCCGCACGTTGAG
CATGCTTCTGACGGCTGCTATGAGCAGCGGTACCCACGTGATCGGGACGT
ACGACACGCACCAACTCCAGCCCGTTTGCGAGAGCAGCGGCATGTCGATT
AGCAGGGACAACGTCAACAGAAAGGTCATCCTCGAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12810:314..499-

>mRNA_H-canaliculatus_F_contig12810.2347.1 ID=mRNA_H-canaliculatus_F_contig12810.2347.1|Name=mRNA_H-canaliculatus_F_contig12810.2347.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=312bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12810:314..499- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTCTCCGCACGTTGAGCATGCTTCTGACGGCTGCTATGAGCAGCGG
TACCCACGTGATCGGGACGTACGACACGCACCAACTCCAGCCCGTTTGCG
AGAGCAGCGGCATGTCGATTAGCAGGGACAACGTCAACAGAAAGGTCATC
CTCGAAATGCCTCTCCGCACGTTGAGCATGCTTCTGACGGCTGCTATGAG
CAGCGGTACCCACGTGATCGGGACGTACGACACGCACCAACTCCAGCCCG
TTTGCGAGAGCAGCGGCATGTCGATTAGCAGGGACAACGTCAACAGAAAG
GTCATCCTCGAA
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