mRNA_H-canaliculatus_F_contig1281.2346.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1281.2346.1
Unique NamemRNA_H-canaliculatus_F_contig1281.2346.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1281.2346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1281contigH-canaliculatus_F_contig1281:26222..26957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size736
Cds size618
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.7433743-UTR-H-canaliculatus_F_contig1281:26221..263391622929003.7433743-UTR-H-canaliculatus_F_contig1281:26221..26339Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1281 26222..26339 +
1696845646.319267-UTR-H-canaliculatus_F_contig1281:26221..263391696845646.319267-UTR-H-canaliculatus_F_contig1281:26221..26339Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1281 26222..26339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.7606711-CDS-H-canaliculatus_F_contig1281:26339..269571622929003.7606711-CDS-H-canaliculatus_F_contig1281:26339..26957Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1281 26340..26957 +
1696845646.336641-CDS-H-canaliculatus_F_contig1281:26339..269571696845646.336641-CDS-H-canaliculatus_F_contig1281:26339..26957Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1281 26340..26957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1281.2346.1prot_H-canaliculatus_F_contig1281.2346.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1281 26340..26957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1281.2346.1

>prot_H-canaliculatus_F_contig1281.2346.1 ID=prot_H-canaliculatus_F_contig1281.2346.1|Name=mRNA_H-canaliculatus_F_contig1281.2346.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=206bp
MGGVETRVGARTANIILFPRLPPWKPTTRPCGGAAAAAAAFGGGFSSDPR
PRGTTEILVGVGAAPARPSRPRPGCTSSVEPLFASGRDLRDWRLGHLSRW
RAPMKQSRGDRPGFKASALAPNRATSWTCTTSLPFEVAVRYLCGSPCPSA
APPGTTGQAVSRRSCRAEHNQRRRERAPATDFCFLSLGRRQCRSSFPRRR
CVFFF*
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mRNA from alignment at H-canaliculatus_F_contig1281:26222..26957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1281.2346.1 ID=mRNA_H-canaliculatus_F_contig1281.2346.1|Name=mRNA_H-canaliculatus_F_contig1281.2346.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=736bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1281:26222..26957+ (Hapterophycus canaliculatus Oshoro5f female)
AGGTTCAGCAGGGGGGAGCCAATCCTGGGGGACTTCAAGGCTGGAATAGG
CCGGCTTCTCTTGAGGAGTAAGGTGTGAGCCGGTCTCCCCATCCCGGGAG
ACGTCGCTTTGCCGTTTCATGGGAGGTGTTGAGACGCGAGTCGGTGCCCG
CACCGCAAATATTATCCTTTTCCCTCGTTTGCCGCCCTGGAAACCGACCA
CTCGCCCGTGCGGTGGTGCTGCTGCTGCTGCTGCTGCGTTCGGCGGCGGC
TTTTCCTCAGACCCCCGCCCCCGTGGAACGACAGAGATTCTTGTTGGTGT
AGGTGCTGCTCCTGCTCGGCCGTCTCGGCCGCGGCCAGGCTGCACGAGCT
CGGTCGAGCCCCTCTTTGCTTCGGGGCGCGATCTCCGAGATTGGAGATTG
GGGCACCTCTCGCGGTGGAGAGCTCCAATGAAGCAGTCCCGGGGGGATCG
TCCCGGGTTCAAAGCATCCGCTCTTGCACCAAACAGAGCCACGAGTTGGA
CGTGCACCACGAGCCTGCCCTTTGAGGTGGCGGTTCGTTACCTTTGCGGT
TCCCCATGCCCTTCGGCCGCGCCGCCCGGCACGACTGGGCAGGCCGTGAG
TCGCCGTAGTTGCCGCGCCGAGCACAACCAGCGGCGACGTGAGCGTGCGC
CTGCTACAGATTTCTGTTTCTTGTCCTTGGGGCGTCGGCAGTGCCGTAGT
TCGTTCCCGCGGCGACGATGTGTATTTTTTTTTTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1281:26222..26957+

>mRNA_H-canaliculatus_F_contig1281.2346.1 ID=mRNA_H-canaliculatus_F_contig1281.2346.1|Name=mRNA_H-canaliculatus_F_contig1281.2346.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1236bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1281:26222..26957+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGGTGTTGAGACGCGAGTCGGTGCCCGCACCGCAAATATTATCCT
TTTCCCTCGTTTGCCGCCCTGGAAACCGACCACTCGCCCGTGCGGTGGTG
CTGCTGCTGCTGCTGCTGCGTTCGGCGGCGGCTTTTCCTCAGACCCCCGC
CCCCGTGGAACGACAGAGATTCTTGTTGGTGTAGGTGCTGCTCCTGCTCG
GCCGTCTCGGCCGCGGCCAGGCTGCACGAGCTCGGTCGAGCCCCTCTTTG
CTTCGGGGCGCGATCTCCGAGATTGGAGATTGGGGCACCTCTCGCGGTGG
AGAGCTCCAATGAAGCAGTCCCGGGGGGATCGTCCCGGGTTCAAAGCATC
CGCTCTTGCACCAAACAGAGCCACGAGTTGGACGTGCACCACGAGCCTGC
CCTTTGAGGTGGCGGTTCGTTACCTTTGCGGTTCCCCATGCCCTTCGGCC
GCGCCGCCCGGCACGACTGGGCAGGCCGTGAGTCGCCGTAGTTGCCGCGC
CGAGCACAACCAGCGGCGACGTGAGCGTGCGCCTGCTACAGATTTCTGTT
TCTTGTCCTTGGGGCGTCGGCAGTGCCGTAGTTCGTTCCCGCGGCGACGA
TGTGTATTTTTTTTTTAAATGGGAGGTGTTGAGACGCGAGTCGGTGCCCG
CACCGCAAATATTATCCTTTTCCCTCGTTTGCCGCCCTGGAAACCGACCA
CTCGCCCGTGCGGTGGTGCTGCTGCTGCTGCTGCTGCGTTCGGCGGCGGC
TTTTCCTCAGACCCCCGCCCCCGTGGAACGACAGAGATTCTTGTTGGTGT
AGGTGCTGCTCCTGCTCGGCCGTCTCGGCCGCGGCCAGGCTGCACGAGCT
CGGTCGAGCCCCTCTTTGCTTCGGGGCGCGATCTCCGAGATTGGAGATTG
GGGCACCTCTCGCGGTGGAGAGCTCCAATGAAGCAGTCCCGGGGGGATCG
TCCCGGGTTCAAAGCATCCGCTCTTGCACCAAACAGAGCCACGAGTTGGA
CGTGCACCACGAGCCTGCCCTTTGAGGTGGCGGTTCGTTACCTTTGCGGT
TCCCCATGCCCTTCGGCCGCGCCGCCCGGCACGACTGGGCAGGCCGTGAG
TCGCCGTAGTTGCCGCGCCGAGCACAACCAGCGGCGACGTGAGCGTGCGC
CTGCTACAGATTTCTGTTTCTTGTCCTTGGGGCGTCGGCAGTGCCGTAGT
TCGTTCCCGCGGCGACGATGTGTATTTTTTTTTTAA
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