mRNA_H-canaliculatus_F_contig1281.2345.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1281.2345.1
Unique NamemRNA_H-canaliculatus_F_contig1281.2345.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1281.2345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1281contigH-canaliculatus_F_contig1281:25569..26129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size561
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1281.2345.1prot_H-canaliculatus_F_contig1281.2345.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1281 25590..26072 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.6756465-UTR-H-canaliculatus_F_contig1281:25568..255891622929003.6756465-UTR-H-canaliculatus_F_contig1281:25568..25589Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1281 25569..25589 +
1696845646.2752218-UTR-H-canaliculatus_F_contig1281:25568..255891696845646.2752218-UTR-H-canaliculatus_F_contig1281:25568..25589Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1281 25569..25589 +
1622929003.7030895-UTR-H-canaliculatus_F_contig1281:26072..261291622929003.7030895-UTR-H-canaliculatus_F_contig1281:26072..26129Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1281 26073..26129 +
1696845646.3085833-UTR-H-canaliculatus_F_contig1281:26072..261291696845646.3085833-UTR-H-canaliculatus_F_contig1281:26072..26129Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1281 26073..26129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.690937-CDS-H-canaliculatus_F_contig1281:25589..260721622929003.690937-CDS-H-canaliculatus_F_contig1281:25589..26072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1281 25590..26072 +
1696845646.2965224-CDS-H-canaliculatus_F_contig1281:25589..260721696845646.2965224-CDS-H-canaliculatus_F_contig1281:25589..26072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1281 25590..26072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1281.2345.1

>prot_H-canaliculatus_F_contig1281.2345.1 ID=prot_H-canaliculatus_F_contig1281.2345.1|Name=mRNA_H-canaliculatus_F_contig1281.2345.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=161bp
MGSHFCGGSNTAAVEVTSFFISSFLFCFVTNSRRCLHRSLHVASMPHLNS
IQDRRGRRGGKICPELSSVRAIPVFHVPPPRRCGARESPGRGCLGGVPIL
RRYLSLRFAQVFGGMPSHPVPPRATSRMLTPLVGHRGGEAPLAARCLPPE
ITDTWPYPQV*
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mRNA from alignment at H-canaliculatus_F_contig1281:25569..26129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1281.2345.1 ID=mRNA_H-canaliculatus_F_contig1281.2345.1|Name=mRNA_H-canaliculatus_F_contig1281.2345.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=561bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1281:25569..26129+ (Hapterophycus canaliculatus Oshoro5f female)
CGACAAGTTGGAGCAAGGAGAATGGGGTCACATTTTTGCGGAGGGAGCAA
TACGGCAGCCGTGGAGGTGACCTCTTTTTTCATTTCCTCATTCCTTTTTT
GTTTCGTGACAAACTCGCGCCGATGCTTGCATCGTAGTCTTCATGTGGCG
AGCATGCCCCACTTAAACTCAATCCAGGATCGAAGGGGCCGAAGGGGTGG
AAAAATTTGCCCCGAGCTGTCAAGTGTACGTGCGATACCGGTATTCCACG
TTCCACCTCCTCGCCGCTGTGGTGCGCGCGAGTCGCCAGGGAGGGGTTGC
CTCGGGGGTGTACCTATTTTGCGGCGGTACCTTTCCCTGCGCTTTGCGCA
AGTGTTCGGCGGTATGCCTTCCCACCCTGTGCCCCCGAGAGCAACGTCGC
GAATGCTGACCCCACTTGTAGGGCACAGGGGAGGGGAGGCGCCACTCGCC
GCTAGATGTCTCCCACCCGAAATAACTGACACCTGGCCTTATCCCCAGGT
TTGAGCGTGAGAACGTGCTTCTCCCTGATGCAAGGGTTGCGGAGGAAAAA
TAAGCTGCTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1281:25569..26129+

>mRNA_H-canaliculatus_F_contig1281.2345.1 ID=mRNA_H-canaliculatus_F_contig1281.2345.1|Name=mRNA_H-canaliculatus_F_contig1281.2345.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=966bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1281:25569..26129+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGTCACATTTTTGCGGAGGGAGCAATACGGCAGCCGTGGAGGTGAC
CTCTTTTTTCATTTCCTCATTCCTTTTTTGTTTCGTGACAAACTCGCGCC
GATGCTTGCATCGTAGTCTTCATGTGGCGAGCATGCCCCACTTAAACTCA
ATCCAGGATCGAAGGGGCCGAAGGGGTGGAAAAATTTGCCCCGAGCTGTC
AAGTGTACGTGCGATACCGGTATTCCACGTTCCACCTCCTCGCCGCTGTG
GTGCGCGCGAGTCGCCAGGGAGGGGTTGCCTCGGGGGTGTACCTATTTTG
CGGCGGTACCTTTCCCTGCGCTTTGCGCAAGTGTTCGGCGGTATGCCTTC
CCACCCTGTGCCCCCGAGAGCAACGTCGCGAATGCTGACCCCACTTGTAG
GGCACAGGGGAGGGGAGGCGCCACTCGCCGCTAGATGTCTCCCACCCGAA
ATAACTGACACCTGGCCTTATCCCCAGGTTTGAATGGGGTCACATTTTTG
CGGAGGGAGCAATACGGCAGCCGTGGAGGTGACCTCTTTTTTCATTTCCT
CATTCCTTTTTTGTTTCGTGACAAACTCGCGCCGATGCTTGCATCGTAGT
CTTCATGTGGCGAGCATGCCCCACTTAAACTCAATCCAGGATCGAAGGGG
CCGAAGGGGTGGAAAAATTTGCCCCGAGCTGTCAAGTGTACGTGCGATAC
CGGTATTCCACGTTCCACCTCCTCGCCGCTGTGGTGCGCGCGAGTCGCCA
GGGAGGGGTTGCCTCGGGGGTGTACCTATTTTGCGGCGGTACCTTTCCCT
GCGCTTTGCGCAAGTGTTCGGCGGTATGCCTTCCCACCCTGTGCCCCCGA
GAGCAACGTCGCGAATGCTGACCCCACTTGTAGGGCACAGGGGAGGGGAG
GCGCCACTCGCCGCTAGATGTCTCCCACCCGAAATAACTGACACCTGGCC
TTATCCCCAGGTTTGA
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