mRNA_H-canaliculatus_F_contig1281.2343.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1281.2343.1 vs. uniprot
Match: A0A6H5K9J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J0_9PHAE) HSP 1 Score: 474 bits (1219), Expect = 1.490e-161 Identity = 267/431 (61.95%), Postives = 304/431 (70.53%), Query Frame = 1
Query: 4 SRRAARALGLGTATLLVLTGATLPHPHPEVLVKQSCPAFCNGIPAALGCTRGLPRLVSAPGRARPATTTMAQTSGRSVVRGSPTRKEGALMAASMSVLLHDEPTSFGGRRPFTSHAARWLIKRCIHRKAVASAALNVEVEARSNRAAMTGRWESISVDFQEMIFDDIQVTGGARFELLGVDLLTLGLLPGPWRRLRRLRRPCEVTGTSRFTDVDVAYSPAIRRLAQRVVNHALRPRAKKADGGGGRAAAGAIGTGFNTNGGGSRW----------------GEGEQQHEVEPRVNVLRVRVRGNKLAIEGEMTNGGTFLRVPFRYEFSLSASRDGHILHFKGSNIYWGTPGGHVPLPMLPLQSFNVDLGDRARIEHLRIAGGILSVGGRFILTNTPGFTVAHQRFKRGSINFDLAESLSRVVSNILRLRRE 1248
+R A R LGLGT TL+V GA+ P + + + + A+ R LP ++ RP +A+ R V T +A ++SVLLHDEP SFGGRRPFTSHAARW IKR I A ASAALNVEVEAR+NR AM GRWESIS+DF + IF+DIQV+GGA FELLGVD+LTLGLLPGPWRRLRRLRRPCE G S FTDVDVAYSPAIRRLAQRVVNHAL+PRAK+A AGA G +QQ +EP V+VL VRV GNKLAIEGEMTNGGTFLRVPFRY FSLSAS+DGH+L+FKGS++YWGTPGGHVPLPM+PLQSF +DLGDRARIEHLRI+ G+LSVGGRFILTNTPGFTVA KRG IN+DLAE LSR+VSN L LRRE
Sbjct: 8 ARLAGRLLGLGTTTLVVAVGASSPSWNQRASSTTATAFLQSSLTIAVRPRRSLPSTAASESWVRPVVGGLAR---RPVGSSVDTNNRIKPLAMAVSVLLHDEPISFGGRRPFTSHAARWFIKRRILSTAKASAALNVEVEARNNRDAMRGRWESISIDFAKTIFEDIQVSGGA-FELLGVDVLTLGLLPGPWRRLRRLRRPCEAIGRSTFTDVDVAYSPAIRRLAQRVVNHALQPRAKRAG-----VVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSAQQQGRLEPSVSVLGVRVHGNKLAIEGEMTNGGTFLRVPFRYHFSLSASQDGHVLYFKGSSVYWGTPGGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSVGGRFILTNTPGFTVALPGLKRGDINYDLAEGLSRLVSNCLNLRRE 429
BLAST of mRNA_H-canaliculatus_F_contig1281.2343.1 vs. uniprot
Match: D8LB91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB91_ECTSI) HSP 1 Score: 447 bits (1149), Expect = 2.480e-152 Identity = 241/343 (70.26%), Postives = 263/343 (76.68%), Query Frame = 1
Query: 286 MSVLLHDEPTSFGGRRPFTSHAARWLIKRCIHRKAVASAALNVEVEARSNRAAMTGRWESISVDFQEMIFDDIQVTGGARFELLGVDLLTLGLLPGPWRRLRRLRRPCEVTGTSRFTDVDVAYSPAIRRLAQRVVNHALRPRAKKADGGGGRAAAGAIGTGFNTNGGGSRWGEG----------------------EQQHEVEPRVNVLRVRVRGNKLAIEGEMTNGGTFLRVPFRYEFSLSASRDGHILHFKGSNIYWGTPGGHVPLPMLPLQSFNVDLGDRARIEHLRIAGGILSVGGRFILTNTPGFTVAHQRFKRGSINFDLAESLSRVVSNILRLRRE 1248
+SVLLHDEP SFGGRRPFTSHAARW IKR I A ASAALNVEVEAR+NR AM GRWESIS+DF + IF+DIQV+GGA FELLGVD+LTLGLLPGPWRRLRRLRRPCE G S FTDVDVAYSPAIRRLAQRVVNHALRPRAK+A A A +QQ +EP V+VL VRV GNKLAIEGEMTNGGTFLRVPFRY FSLSAS DGH+L+FKGS++YWGTPGGHVPLPM+PLQSF +DLGDRARIEHLRI+ G+LS+GGRFILTNTPGFTVA KRG IN+DLAESLSR+VSN L LRRE
Sbjct: 3 VSVLLHDEPISFGGRRPFTSHAARWFIKRRILSTAKASAALNVEVEARNNRDAMRGRWESISIDFAKTIFEDIQVSGGA-FELLGVDVLTLGLLPGPWRRLRRLRRPCEAIGRSTFTDVDVAYSPAIRRLAQRVVNHALRPRAKRA------AVAXXXXXXXXXXXXXXXXXXXXLPXXXXXXXXXXXXXXXXXSEQQQGGLEPSVSVLGVRVHGNKLAIEGEMTNGGTFLRVPFRYHFSLSASADGHVLYFKGSSVYWGTPGGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSLGGRFILTNTPGFTVALPGLKRGDINYDLAESLSRLVSNCLNLRRE 338
BLAST of mRNA_H-canaliculatus_F_contig1281.2343.1 vs. uniprot
Match: A0A6H5K8F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F0_9PHAE) HSP 1 Score: 156 bits (394), Expect = 3.610e-37 Identity = 93/304 (30.59%), Postives = 154/304 (50.66%), Query Frame = 1
Query: 334 PFTSHAARWLIKRCIHRKAVASAALNVEVEARSNRAAMTGRWESISVDFQEMIFDDIQVTGGARFELLGVDLLTLGLLPGPWRRLRRLRRPCEVTGTSRFTDVDVAYSPAIRRLAQRVVNHALRPRAKKADGGGGRAAAGAIGTGFNTNGGGSRWGEGEQQHEVEP----RVNVLRVRVRGNKLAIEGEMTNGGTFLRVPFRYEFSLSASRDGHILHFKGSNIYWGTPGGHVPLPMLPLQSFNVDLGDRARIEHLRIAGGILSVGGRFILTNTPGFTVAHQRFKRGSINFDLAESLSRVVSNIL 1233
P S W+++R I +A+ L V V+ARSNR AM+G +S+ + F + +++Q++GGAR + +DL + LL W+R ++P E+ G+ T D++ S +RRL ++N LR A EP + + +V + ++L IEGEM +VPF Y S+ GH+++ K + ++W GG + LP+LPL++F+VD+G+ ARIE +RI G +++ R +++ P VA R KR + FD+AE LS N++
Sbjct: 496 PLWSKILVWVLERAITNRAMLVEGLEVSVDARSNREAMSGLLQSVGITFNHLELENLQISGGARMNITNLDLKVMTLL---WKRFGSFKKPFEIEGSYVLTSEDLSTSSIVRRLVTNMMNSTLRKLETLA---------------------------------TEPLRKSSITITQVSAKRSRLVIEGEMAYDSA--KVPFTYRTSIGVKGKGHVVYLKDAEVFWENIGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASVR-KRAAFRFDVAERLSVTFGNLV 760
BLAST of mRNA_H-canaliculatus_F_contig1281.2343.1 vs. uniprot
Match: D7G8F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F0_ECTSI) HSP 1 Score: 122 bits (307), Expect = 2.110e-26 Identity = 74/253 (29.25%), Postives = 125/253 (49.41%), Query Frame = 1
Query: 487 MIFDDIQVTGGARFELLGVDLLTLGLLPGPWRRLRRLRRPCEVTGTSRFTDVDVAYSPAIRRLAQRVVNHALRPRAKKADGGGGRAAAGAIGTGFNTNGGGSRWGEGEQQHEVEP----RVNVLRVRVRGNKLAIEGEMTNGGTFLRVPFRYEFSLSASRDGHILHFKGSNIYWGTPGGHVPLPMLPLQSFNVDLGDRARIEHLRIAGGILSVGGRFILTNTPGFTVAHQRFKRGSINFDLAESLSRVVSNIL 1233
M+ + ++++GGAR + +DL + LL W+R ++P E+ G+ T D++ S +RRL ++N LR A EP + + +V + ++L IEGEM +VPF Y S+ GH+++ K + ++W GG + LP+LPL++F+VD+G+ ARIE +RI G +++ R +++ P VA R KR + FD+AE LS N++
Sbjct: 288 MLVEGLEISGGARMNITNLDLKVMTLL---WKRFGSFKKPFEIEGSYVLTSEDLSTSSMVRRLVTNMMNSTLRKLETLA---------------------------------TEPLRKSSITITQVLAKRSRLVIEGEMAYDSA--KVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGSLSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLR-KRAAFRFDVAERLSVTFGNLV 501
BLAST of mRNA_H-canaliculatus_F_contig1281.2343.1 vs. uniprot
Match: A0A7S2V2K7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2K7_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 4.430e-19 Identity = 83/296 (28.04%), Postives = 137/296 (46.28%), Query Frame = 1
Query: 328 RRPFTSHAARWLIKRCIHRKAVASAALNVEVEARSNRAAMTGRWESISVDFQEMIFDDIQVTGGARFELLGVDLLTLGLLPGPWRRLRRLRRPCEVTGTSRFTDVDVAYSPAIRRLAQRVVNHALRPRAKKADGGGGRAAAGAIGTGFNTNGGGSRWGEGEQQHEVEPRVNVLRVRVRGNKLAIEGEMTNGGTFLRVPFRYEFSLSASRDGHILHFKGSNIYWGTPGG-HVPLPMLPLQSFNVDLGDRARIEHLRIAGGILSVGGRFILTNTPGFTVAHQRFKRGSINFDLAESLS 1212
RRPF + A W+ KR I ++ + L+V V + SN ++G +SI V F ++ F+ QVTGG ++LG++L L W LR+L++P E+ T D+ SPA+R +AQ ++N L RA ++ + V V +V + N++A G + N +PF L +GH++ + + +P+ L ++DLG+ A+IE L I + VG R +++ P F VA Q KR + ++DL + LS
Sbjct: 126 RRPFCAKFANWIGKRIIKSRSRYVSKLSVSVASDSNIQVLSGNLKSIEVSFDQLFFEKWQVTGGGYLQILGLNL-KLTAFVFTW--LRKLKKPFELYSEVVLTQSDLINSPALRDVAQVILNGVLS-----------RALDRSLLS-----------------------VKVRKVSIVDNRIAFYG-IANSAVTGSIPFTVWTGLQLKDNGHVISLDQLEVSTNPNTWLEMTVPVYSLGPIDIDLGENAKIERLTIENRKVLVGARAVISTVPPFQVA-QVEKRATYHYDLGKFLS 382
BLAST of mRNA_H-canaliculatus_F_contig1281.2343.1 vs. uniprot
Match: A0A4D9D3X5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3X5_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 3.640e-18 Identity = 84/300 (28.00%), Postives = 136/300 (45.33%), Query Frame = 1
Query: 328 RRPFTSHAARWLIKRCIHRKAVASAALNVEVEARSNRAAMTGRWESISVDFQEMIFDDIQVTGGARFELLGVDLLTLGLLPGPWRRLRRLRRPCEVTGTSRFTDVDVAYSPAIRRLAQRVVNHALRPRAKKADGGGGRAAAGAIGTGFNTNGGGSRWGEGEQQHEVEPRVNVLRVRVRGN-KLAIEGEMTNGGTFLRVPFRYEFSLSASRDGHILHFKGSNIYWGTPGGHVPL--PMLPLQSFNVDLGDRARIEHLRI--AGGILSVGGRFILTNTPGFTVAHQRFKRGSINFDLAESLS 1212
R+P S L + + + A L+V+V ARSN + G + F ++ +++Q++GG R E+ G+++ L LL RRL +R+P EV G T DV+ S IR + Q +VN+ LR T F + H V++ VR+ KLA+ G + +PF + + DGHI++ + P +P+ P+ +++F+VD+GD ARIE L I A G+ +V R ++T P F V KR + +D+ S
Sbjct: 4 RKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLA--RRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLR-------------------TLFPS------------LHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLN-PKAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGV-TVTARTLITPAPPFQVTDVG-KRAAFLYDMGAFFS 267
BLAST of mRNA_H-canaliculatus_F_contig1281.2343.1 vs. uniprot
Match: W7TXL0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXL0_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 7.330e-18 Identity = 85/304 (27.96%), Postives = 137/304 (45.07%), Query Frame = 1
Query: 316 SFGGRRPFTSHAARWLIKRCIHRKAVASAALNVEVEARSNRAAMTGRWESISVDFQEMIFDDIQVTGGARFELLGVDLLTLGLLPGPWRRLRRLRRPCEVTGTSRFTDVDVAYSPAIRRLAQRVVNHALRPRAKKADGGGGRAAAGAIGTGFNTNGGGSRWGEGEQQHEVEPRVNVLRVRVRGN-KLAIEGEMTNGGTFLRVPFRYEFSLSASRDGHILHFKGSNIYWGTPGGHVPL--PMLPLQSFNVDLGDRARIEHLRI--AGGILSVGGRFILTNTPGFTVAHQRFKRGSINFDLAESLS 1212
S R+P S L + + + A L+V+V ARSN + G + F ++ +++Q++GG R E+ G+++ L LL RRL +R+P EV G T DV+ S IR + Q +VN+ LR T F + H V++ VR+ KLA+ G + +PF + + DGHI++ + P +P+ P+ +++F+VD+GD ARIE L I A G+ +V R ++T P F V KR + +D+ S
Sbjct: 91 SMSERKPILSTVVEVLASKLVRKTARRVTGLDVDVGARSNSDVLAGNLPLVKAKFSRIVLENLQISGGGRMEITGLNIRLLALLLA--RRLSLIRKPFEVCGEYVLTQQDVSASKLIRDMVQLLVNNVLR-------------------TLFPS------------LHLTFFDVSIDSVRISPRRKLAVHGTANVAESASGMPFTLLTGVGLAGDGHIVYLDDPELVLN-PEAPLPVKVPLGSIRAFDVDIGDNARIERLEIDEARGV-TVTARTLITPAPPFQVTDVG-KRAAFLYDMGAFFS 358 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1281.2343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1281.2343.1 >prot_H-canaliculatus_F_contig1281.2343.1 ID=prot_H-canaliculatus_F_contig1281.2343.1|Name=mRNA_H-canaliculatus_F_contig1281.2343.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=347bp MAQTSGRSVVRGSPTRKEGALMAASMSVLLHDEPTSFGGRRPFTSHAARWback to top mRNA from alignment at H-canaliculatus_F_contig1281:17518..20620- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1281.2343.1 ID=mRNA_H-canaliculatus_F_contig1281.2343.1|Name=mRNA_H-canaliculatus_F_contig1281.2343.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3103bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1281:17518..20620- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1281:17518..20620- >mRNA_H-canaliculatus_F_contig1281.2343.1 ID=mRNA_H-canaliculatus_F_contig1281.2343.1|Name=mRNA_H-canaliculatus_F_contig1281.2343.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2082bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1281:17518..20620- (Hapterophycus canaliculatus Oshoro5f female)back to top |