mRNA_H-canaliculatus_F_contig1281.2340.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1281.2340.1
Unique NamemRNA_H-canaliculatus_F_contig1281.2340.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1281.2340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1281contigH-canaliculatus_F_contig1281:7312..8228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size919
Cds size504
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.5641475-UTR-H-canaliculatus_F_contig1281:7311..77241622929003.5641475-UTR-H-canaliculatus_F_contig1281:7311..7724Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1281 7312..7724 +
1696845646.2423158-UTR-H-canaliculatus_F_contig1281:7311..77241696845646.2423158-UTR-H-canaliculatus_F_contig1281:7311..7724Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1281 7312..7724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.5781682-CDS-H-canaliculatus_F_contig1281:7724..82281622929003.5781682-CDS-H-canaliculatus_F_contig1281:7724..8228Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1281 7725..8228 +
1696845646.252408-CDS-H-canaliculatus_F_contig1281:7724..82281696845646.252408-CDS-H-canaliculatus_F_contig1281:7724..8228Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1281 7725..8228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1281.2340.1prot_H-canaliculatus_F_contig1281.2340.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1281 7725..8228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1281.2340.1

>prot_H-canaliculatus_F_contig1281.2340.1 ID=prot_H-canaliculatus_F_contig1281.2340.1|Name=mRNA_H-canaliculatus_F_contig1281.2340.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=168bp
MASVTSEKARLAKREHGARRGRGRRAQDDQKLQYYFLNSRRLTSIWSTAR
HFAVRSFIRQKRQSLTQIFRPPGPNFGRNAALWTSSPPQWIRRSDEKQLP
LTSARSRWPHHPAQTDIYCPYQHASRAQLTSNIPLKHAAGKNGWRRRHMV
SVSIGNLPAVSVAAAAEV
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mRNA from alignment at H-canaliculatus_F_contig1281:7312..8228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1281.2340.1 ID=mRNA_H-canaliculatus_F_contig1281.2340.1|Name=mRNA_H-canaliculatus_F_contig1281.2340.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=917bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1281:7312..8228+ (Hapterophycus canaliculatus Oshoro5f female)
GGTCTTGTTGAGTTAGGAAAAGGGCGCACGCAGGAGCTGCTCCATTAGAA
ACCAAATCGCGGCGGGGCATGTGCAGACTGCACCGTGTGCTCAGCGCAAT
ATATGCAAACCCAGAGGGTTTGCGCCGGTCCGAACAACCCCAACAACAAA
AAGCAGAATATTTTGTACGTTGTGCTAAACGCGGCTCGCTCCGATTTAAA
TAAAAAGCAACACATAAGGCCCGCATGAAAACGTTTTCCGTTCATGCCTA
ATCGGGGTGCCCGCATGCTGTTTTAGTGCGATCTTTTTCGTGTGGCAGCT
AAGGGTCTTTGTGTCAAATTGGCTTGCAGTAGACCAACAGCAATCAAACT
CTTCGAGTTGGCCAGAAAATAAAACTTTGCTTGACTCTGCTGATCCGGGG
AATACACACGACGATGGCATCTGTGACGTCTGAAAAAGCGAGGCTTGCCA
AACGAGAACATGGCGCTCGCCGCGGGAGAGGAAGGCGAGCCCAGGACGAT
CAAAAACTCCAATACTATTTTCTAAACTCCCGACGACTGACTTCCATTTG
GTCGACTGCACGGCACTTCGCCGTGAGAAGTTTCATACGTCAAAAGAGAC
AATCTTTGACACAGATTTTCCGCCCTCCTGGACCTAACTTTGGCAGAAAC
GCTGCGTTATGGACATCCTCTCCTCCACAATGGATCCGGAGGAGCGATGA
AAAGCAGTTGCCGCTGACCAGTGCTAGATCCCGCTGGCCCCACCATCCGG
CCCAAACGGATATTTACTGTCCTTATCAGCATGCATCGAGAGCACAGCTT
ACCAGCAACATACCCCTAAAGCATGCAGCGGGAAAAAATGGATGGCGTAG
AAGACATATGGTATCCGTTTCTATCGGAAACCTGCCTGCTGTTTCTGTTG
CCGCTGCTGCTGAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1281:7312..8228+

>mRNA_H-canaliculatus_F_contig1281.2340.1 ID=mRNA_H-canaliculatus_F_contig1281.2340.1|Name=mRNA_H-canaliculatus_F_contig1281.2340.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1008bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1281:7312..8228+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCATCTGTGACGTCTGAAAAAGCGAGGCTTGCCAAACGAGAACATGG
CGCTCGCCGCGGGAGAGGAAGGCGAGCCCAGGACGATCAAAAACTCCAAT
ACTATTTTCTAAACTCCCGACGACTGACTTCCATTTGGTCGACTGCACGG
CACTTCGCCGTGAGAAGTTTCATACGTCAAAAGAGACAATCTTTGACACA
GATTTTCCGCCCTCCTGGACCTAACTTTGGCAGAAACGCTGCGTTATGGA
CATCCTCTCCTCCACAATGGATCCGGAGGAGCGATGAAAAGCAGTTGCCG
CTGACCAGTGCTAGATCCCGCTGGCCCCACCATCCGGCCCAAACGGATAT
TTACTGTCCTTATCAGCATGCATCGAGAGCACAGCTTACCAGCAACATAC
CCCTAAAGCATGCAGCGGGAAAAAATGGATGGCGTAGAAGACATATGGTA
TCCGTTTCTATCGGAAACCTGCCTGCTGTTTCTGTTGCCGCTGCTGCTGA
GGTGATGGCATCTGTGACGTCTGAAAAAGCGAGGCTTGCCAAACGAGAAC
ATGGCGCTCGCCGCGGGAGAGGAAGGCGAGCCCAGGACGATCAAAAACTC
CAATACTATTTTCTAAACTCCCGACGACTGACTTCCATTTGGTCGACTGC
ACGGCACTTCGCCGTGAGAAGTTTCATACGTCAAAAGAGACAATCTTTGA
CACAGATTTTCCGCCCTCCTGGACCTAACTTTGGCAGAAACGCTGCGTTA
TGGACATCCTCTCCTCCACAATGGATCCGGAGGAGCGATGAAAAGCAGTT
GCCGCTGACCAGTGCTAGATCCCGCTGGCCCCACCATCCGGCCCAAACGG
ATATTTACTGTCCTTATCAGCATGCATCGAGAGCACAGCTTACCAGCAAC
ATACCCCTAAAGCATGCAGCGGGAAAAAATGGATGGCGTAGAAGACATAT
GGTATCCGTTTCTATCGGAAACCTGCCTGCTGTTTCTGTTGCCGCTGCTG
CTGAGGTG
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