mRNA_H-canaliculatus_F_contig1281.2338.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1281.2338.1
Unique NamemRNA_H-canaliculatus_F_contig1281.2338.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1281.2338.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 8.900e-24
Identity = 71/135 (52.59%), Postives = 83/135 (61.48%), Query Frame = 3 
Query:  102 MGCAPSRDSASSQHAG--GCLCRGCYRGGCTSCGAV-EGQTTTAYGESSAVPLPEGAAPSGSGAPKPVLDGSDDCLWLGGGTSAKIESGSKVSEKPSKIAEEGPDDTATSVSATAVPQSKDSKLGINVVAPSGDA 497
            MGCAPSRDS+  Q      CLC GCY   C  CGA  EGQTTT+YGESSAVPLPEG   +GS   KPV+ GS D  W+GGGTS KIE+G   + KP   A            A A+   ++SK+ +NVVAPSG A
Sbjct:    1 MGCAPSRDSSRRQEPKPCSCLCNGCYPYLC--CGAPSEGQTTTSYGESSAVPLPEGGHQAGSAGDKPVMHGSHDYHWIGGGTSGKIETG--AAHKPETPAG----------GAAAMAHGEESKMDVNVVAPSGAA 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1281.2338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB94_ECTSI8.900e-2452.59Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1281contigH-canaliculatus_F_contig1281:646..4594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue4.5e-22
Seed eggNOG ortholog2880.D8LB94
EggNOG free text desc.axon ensheathment
EggNOG OGs28M73@1,2QTQ3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size499
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1281.2338.1prot_H-canaliculatus_F_contig1281.2338.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1281 646..4125 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.7936592-CDS-H-canaliculatus_F_contig1281:645..7281622929003.7936592-CDS-H-canaliculatus_F_contig1281:645..728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1281 646..728 -
1696845646.3494885-CDS-H-canaliculatus_F_contig1281:645..7281696845646.3494885-CDS-H-canaliculatus_F_contig1281:645..728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1281 646..728 -
1622929003.8095713-CDS-H-canaliculatus_F_contig1281:1807..19631622929003.8095713-CDS-H-canaliculatus_F_contig1281:1807..1963Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1281 1808..1963 -
1696845646.3606102-CDS-H-canaliculatus_F_contig1281:1807..19631696845646.3606102-CDS-H-canaliculatus_F_contig1281:1807..1963Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1281 1808..1963 -
1622929003.8197114-CDS-H-canaliculatus_F_contig1281:3968..41251622929003.8197114-CDS-H-canaliculatus_F_contig1281:3968..4125Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1281 3969..4125 -
1696845646.369959-CDS-H-canaliculatus_F_contig1281:3968..41251696845646.369959-CDS-H-canaliculatus_F_contig1281:3968..4125Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1281 3969..4125 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.82952-UTR-H-canaliculatus_F_contig1281:4125..41301622929003.82952-UTR-H-canaliculatus_F_contig1281:4125..4130Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1281 4126..4130 -
1696845646.3782325-UTR-H-canaliculatus_F_contig1281:4125..41301696845646.3782325-UTR-H-canaliculatus_F_contig1281:4125..4130Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1281 4126..4130 -
1622929003.8412867-UTR-H-canaliculatus_F_contig1281:4498..45941622929003.8412867-UTR-H-canaliculatus_F_contig1281:4498..4594Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1281 4499..4594 -
1696845646.38649-UTR-H-canaliculatus_F_contig1281:4498..45941696845646.38649-UTR-H-canaliculatus_F_contig1281:4498..4594Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1281 4499..4594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1281.2338.1

>prot_H-canaliculatus_F_contig1281.2338.1 ID=prot_H-canaliculatus_F_contig1281.2338.1|Name=mRNA_H-canaliculatus_F_contig1281.2338.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=132bp
MGCAPSRDSASSQHAGGCLCRGCYRGGCTSCGAVEGQTTTAYGESSAVPL
PEGAAPSGSGAPKPVLDGSDDCLWLGGGTSAKIESGSKVSEKPSKIAEEG
PDDTATSVSATAVPQSKDSKLGINVVAPSGDA
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mRNA from alignment at H-canaliculatus_F_contig1281:646..4594-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1281.2338.1 ID=mRNA_H-canaliculatus_F_contig1281.2338.1|Name=mRNA_H-canaliculatus_F_contig1281.2338.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3949bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1281:646..4594- (Hapterophycus canaliculatus Oshoro5f female)
GCTTCACTTTGGCATTGTTGAACTCATCAAAGGACGACAGGTAGCCTTCA
CCTGCGCGGGGCGAGAGCAACAACCGAGCACCTCCCAAAGAACTATGTGA
GTGTACTGGGTTATGCCCGCTTCTGTGGCCCATCACGAGTGTTGCCCCCA
AAATACGGCATCCAATGACCGCATGTGTGGAGCCACCACCCTGTCTTTTA
TCTGATCTAATACCCTTCGGTAAACCTTGAGCGTCCAAGACAGCCTTGAA
AGGGCTTCCTAGATCAGGCTTTCGAGATCGCCTTGAGCAGCGGCCATCAA
CAACTGACGGAACGGAACGCTAACGGAACGCTTACATGAGAGGCGATGTT
TTTCGTGGCCGCATTACATCTTCAGCCGGTGCATTTTCCATTGCTTCTGT
CGGCGAACTCAGCTCGCAATCCGTTGCCGTTCTTGTCCCTCACCGTGCTG
TTTCGTTCCTGTAGCCAACATGGGGTGCGCCCCATCGAGGGATAGTGCCA
GCTCACAGCACGCAGGCGGCTGCCTGTGCCGTGGTTGCTACCGTGGTGGT
TGCACTTCGTGTGGGGCGGTGGAGGGACAAACAACCACGGCCTACGGAGA
GAGCTCTGCTGTTCCTCTCCCTGAAGGTGAGCTCCACCGGAGGACCCCCG
TTTCCCTTTTTGTGATCGATCTGTTCAAGAGTCTTCGAATAACCGCCAAC
AACTTCATCCCGTCCCCCGCAAAAAACAGAATGGCGAAGACCTGACATCG
TTTGTGCCACGCCACCCACTTTCTCATCCCTGCCCTAGCGAGGGATAGCC
TTGTTGAACCCCTGTGCTACTGATCCGAGCATGGCGCTTCGTGCATGGTG
CATGTGTCGTCGTGAAAACTTCGCTCTTCTTTTCTGTCGGGTCGTGAAGA
ATATTTTGATCTTGATCCAGCAACCTGTCCTCTACGCGCGCATCCTGGAG
TCTGAAACACTTCGAGACGACGCATTGTTCTGCTCAGCTCGCCGCGCCGT
TGTCAACGCTAGCGCTAAGCGATTTCGGTCGACTTCTTGCCGCCAGCACA
TTGGTGTGTCGTGATTGAGAAAGACCCCTGTTCGTGATATGTTGGCGCCT
TGTTGGCGACGCAAAGAGAGGGTTGTTCTCAATTTTCGAATTGTTCTGTG
AACAGCTTGCGATTTTCGATGCGATTTTCGATCCGATTTTCTAAGGGAGT
TCTTTCGACGTCGACCCTGACAAACCCAAGGATCGCATGCCCAAGGAAGG
TTTGCGTTGACTAGAGCTAGAGAGAGGGAGCAAGGCAGGGCGAGACAAGA
GTAGTAGAGGAACAGGTAGCAGTGGTTCGAAAATCTGGAATTGTTCTGTG
AACGGCTTCCGAATTTTCAATTTTCAAACGTGGTGGTTCTTGACTTCGTT
ACACGATCAAACGCATATTTCAGAGAAGACAAACAAGACGAAGAGGAACT
CATCCCCAAAAAGTGAAGATGCACCTCGCGCCGCCCTCCGTGGGCAAGTT
GACCTTGTTGCGCATCTGTCGAACCCGGCGCACGCCAGCGCAGCGCTGCC
CCATATTTATGGCGGCCCCCCAAGAGCATCTGGCCTGTTCGTCCACTCGA
TCCAGTGCTGTTGGAGACCGAAAAAGGCTTCCTCTACACCTGTAAATCCA
TCATGAAAAAAACACAGGATACGCTGCCGGAAAAAAAGAACATCAAACTA
AAAGCACTTGAAATGTGTACAGCAAATCGGACCCTTCTCCTGCAACCTGC
GTTCAATTTGAATGAATGTACGAAGTTGAACTCTTCGTTCCTGGTGGCAT
GATCGTAGGGTTGCTTCGTCTAGGGTTTTTATCGCGCGTTCGCACCGAGT
GGGCTTTGATTGCAAGCGCTAGCAGTCGGGGCCAGAAAAACAGACTCGGG
GCTGGAGTATTGCACAAAAGTTACACAATCACGTGAATCGCAGCGTTAGT
TGAGGTCCGCGTTACACTGCGTTGGGCTGCTCTCCCGCCGATCAGCGTAG
TGGAGATTTGTGCTCTCTCAGTATACCTTTGATAGTTTCAGGGGTACATA
CGTGGCAGGAGAGAGAAGTGGTTGATTTTTGGTAGCCGTGTGAGCTGTGG
CATGCGCTCGTGTCGAAGCAACATCGGCACATTACAAATGACGATCTCTC
ACATCACACCAAAAATAGGCAGTTGCGCAAACTGTCAGCGGGCGACTGGC
CAGGCTAGTCGCGTTCGGTTTGTTCGTGGAAGGCAACCGTCATTAGCGTT
GGAAAACCCATTTCACCGCCTGGTGGATTGTCACCATCTGGGATGTCGTC
CGTATGTTTCTACGTGGACCATGGAATCGTCTGTGCAAGGAAAATCTCCG
ACATGGGATTTGCTTTATATTTTACCCACCTTGTCTACATTCCATCTTGT
GTCCTCCTTTTTGTCGACTCATTAAGAACGCCATGCCTTCAGATCTCCGT
GCACATTTTGTTGTGCAGGGACATTGCCCTTCGACCTTCTACTGCTGTGC
TGACTGTACCGTACCTCGAACCCGTGTCCAGAGGTCGAGATGGAACCAAT
TTATGATAATTCCTCAGCTCATCAAGAAACGGTGTTATAGACTGTTCACG
AATCGAAACAACCACGATGGCGGAAATTCAGGAGCGGCTCCATCCGGCTC
AGGAGCACCTAAACCGGTGCTGGATGGGTCGGACGACTGCTTATGGCTCG
GAGGCGGGACGTCTGCAAAGATTGAGAGCGGATCGAAGGTGTCGGAGAAG
CCTTCCAAGATTGCTGAAGAGGGTCCCGATGACACTGGTGCGCAGTAGCT
AGTATAACGCCCCCATGCGGCTGACTACGACAATTCCTGATCATTAATTA
GGCGGCCTTGCTCGACTCCCGAAAGTGGTTCTGAGAGGTAGGGGTTAACA
AGTGTGACGCTTGGCCTTAATGCCTGTCGAGAGTAGGAGCCGAGCGTGTG
GCATCAGGTCGATGGTGTACTCCATACATGGGAATACTTCCTCCACCTCG
TAGGAGCTCTCTGGAATCAATCCCTGTGCTCCAAACATTGTTAACCTACT
TTGAGAGCATCATTTCTTCCTGTGATACCTACATCGTAGTCTCGCATGGA
TTTGGTGCGTGCAATTCGGTCCGTGTATGATTGTTGGGAGTATCTGGTTG
TCAAGTCAAGCGTTTCCACTTATGGTTCGCCGTCGAAACACTTCAGTTAT
TCAACATCAAAATGTTCGACTCATTCTCGAGAAACAAACGTGGTGCCCTT
GGAGGGATGCGGGCCCATCCATCGAATCGTGTATATTTGTCTGCGAACCA
AAGATACATGCAATCGGTGTTTGACCCACTTGTAGGTTATTAGCCAAGAT
TTTTTTTTTTACCGGCACGTCAGTTTCTTGGTCTCCCCAAAATTTGAACG
GGGCTTCGGTTCTTCATCGTTTCTGAGCGGTCTTGTCCGAAGAGGAACGC
GTACCACTCGTTGCACGGCTAAACTATTAGGACCACCGTCGGTCACGGGA
GAGTGGTCATCGATTCATATTTCCCTGGTCAAATCAAAATATCGGTCGCT
CATCTGTGGATTAAATTATACTTCGAAGAACAATCCTGAAGGTGTGATCA
CCGGCCCGTGACGAAGCAAAACCGACTGTGACGAAGCAGACCTAAGACGA
ACCTCGAGACACTCCAAGTTTCCTCTAACGCATCTTCGAATAAAAATATT
TGGCATCTTGGAGTGAGAACACTTGCGGCGGTGCAGCGTTCGTGAGAGGC
GAGGTCGTCGGCTCGGATTGTTCGAAGTCCTGTTGCCCTTGCAACCTTCT
CTCACTTATGGTGCCGTCCCTTGTCATTCCTGTGTCCATTCGCCCTGCTG
TCCATTTGTTCGCCAGCAACGAGCGTGTCCGCTACCGCAGTACCGCAAAG
CAAAGACAGCAAGCTTGGTATCAACGTTGTTGCCCCCAGCGGAGACGCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1281:646..4594-

>mRNA_H-canaliculatus_F_contig1281.2338.1 ID=mRNA_H-canaliculatus_F_contig1281.2338.1|Name=mRNA_H-canaliculatus_F_contig1281.2338.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=792bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1281:646..4594- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGTGCGCCCCATCGAGGGATAGTGCCAGCTCACAGCACGCAGGCGG
CTGCCTGTGCCGTGGTTGCTACCGTGGTGGTTGCACTTCGTGTGGGGCGG
TGGAGGGACAAACAACCACGGCCTACGGAGAGAGCTCTGCTGTTCCTCTC
CCTGAAGATGGGGTGCGCCCCATCGAGGGATAGTGCCAGCTCACAGCACG
CAGGCGGCTGCCTGTGCCGTGGTTGCTACCGTGGTGGTTGCACTTCGTGT
GGGGCGGTGGAGGGACAAACAACCACGGCCTACGGAGAGAGCTCTGCTGT
TCCTCTCCCTGAAGGAGCGGCTCCATCCGGCTCAGGAGCACCTAAACCGG
TGCTGGATGGGTCGGACGACTGCTTATGGCTCGGAGGCGGGACGTCTGCA
AAGATTGAGAGCGGATCGAAGGTGTCGGAGAAGCCTTCCAAGATTGCTGA
AGAGGGTCCCGATGACACTGGAGCGGCTCCATCCGGCTCAGGAGCACCTA
AACCGGTGCTGGATGGGTCGGACGACTGCTTATGGCTCGGAGGCGGGACG
TCTGCAAAGATTGAGAGCGGATCGAAGGTGTCGGAGAAGCCTTCCAAGAT
TGCTGAAGAGGGTCCCGATGACACTGCAACGAGCGTGTCCGCTACCGCAG
TACCGCAAAGCAAAGACAGCAAGCTTGGTATCAACGTTGTTGCCCCCAGC
GGAGACGCACAACGAGCGTGTCCGCTACCGCAGTACCGCAAAGCAAAGAC
AGCAAGCTTGGTATCAACGTTGTTGCCCCCAGCGGAGACGCA
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