mRNA_H-canaliculatus_F_contig12804.2337.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12804.2337.1
Unique NamemRNA_H-canaliculatus_F_contig12804.2337.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12804.2337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12804contigH-canaliculatus_F_contig12804:356..770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size175
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929003.3979151-CDS-H-canaliculatus_F_contig12804:355..4421622929003.3979151-CDS-H-canaliculatus_F_contig12804:355..442Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12804 356..442 -
1696845646.153015-CDS-H-canaliculatus_F_contig12804:355..4421696845646.153015-CDS-H-canaliculatus_F_contig12804:355..442Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12804 356..442 -
1622929003.411232-CDS-H-canaliculatus_F_contig12804:683..7701622929003.411232-CDS-H-canaliculatus_F_contig12804:683..770Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12804 684..770 -
1696845646.1619122-CDS-H-canaliculatus_F_contig12804:683..7701696845646.1619122-CDS-H-canaliculatus_F_contig12804:683..770Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12804 684..770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12804.2337.1prot_H-canaliculatus_F_contig12804.2337.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12804 356..770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12804.2337.1

>prot_H-canaliculatus_F_contig12804.2337.1 ID=prot_H-canaliculatus_F_contig12804.2337.1|Name=mRNA_H-canaliculatus_F_contig12804.2337.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
LLKTDQRYCTSTSTRHDFQILPSGPNNTRSSWIQDCRNDLHAQVLGLNIN
LQKETPIT
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mRNA from alignment at H-canaliculatus_F_contig12804:356..770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12804.2337.1 ID=mRNA_H-canaliculatus_F_contig12804.2337.1|Name=mRNA_H-canaliculatus_F_contig12804.2337.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=415bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12804:356..770- (Hapterophycus canaliculatus Oshoro5f female)
CTGCTCAAGACCGATCAACGATACTGTACGAGTACAAGTACACGTCATGA
CTTCCAGATTCTACCATCGGGTCCTAACAACACACGGGTGACTATTGTAG
CGGCGCATGGCATTGCCGAACGTTCCTCCCTCCCGTTCTGCTTGGAGCAT
CTGGCTTCGATACCTGCCATGGTTTTCGCTCTTGCGGGCCCTCATTTGCG
TTGAGGTGGACACTCGTTGGCTTTGCGCACCGCTACTTGTACGCTCATCC
CTCATCTTCACCTGCTGACCAAACCAAGGGGCTCCACGTCTGTCTGCGGG
TGTGCGTTACTAAATCTTCGGGTGCGAGTCTAGCTGGATTCAAGACTGCA
GAAACGACTTGCACGCGCAGGTGCTGGGACTCAACATTAACCTGCAGAAG
GAGACACCTATTACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12804:356..770-

>mRNA_H-canaliculatus_F_contig12804.2337.1 ID=mRNA_H-canaliculatus_F_contig12804.2337.1|Name=mRNA_H-canaliculatus_F_contig12804.2337.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12804:356..770- (Hapterophycus canaliculatus Oshoro5f female)
CTGCTCAAGACCGATCAACGATACTGTACGAGTACAAGTACACGTCATGA
CTTCCAGATTCTACCATCGGGTCCTAACAACACACGGCTGCTCAAGACCG
ATCAACGATACTGTACGAGTACAAGTACACGTCATGACTTCCAGATTCTA
CCATCGGGTCCTAACAACACACGGTCTAGCTGGATTCAAGACTGCAGAAA
CGACTTGCACGCGCAGGTGCTGGGACTCAACATTAACCTGCAGAAGGAGA
CACCTATTACGTCTAGCTGGATTCAAGACTGCAGAAACGACTTGCACGCG
CAGGTGCTGGGACTCAACATTAACCTGCAGAAGGAGACACCTATTACG
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