mRNA_H-canaliculatus_F_contig128.2329.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig128.2329.1
Unique NamemRNA_H-canaliculatus_F_contig128.2329.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig128.2329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig128contigH-canaliculatus_F_contig128:56905..57803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size843
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig128.2329.1prot_H-canaliculatus_F_contig128.2329.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig128 57019..57548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929001.27493-UTR-H-canaliculatus_F_contig128:56904..570181622929001.27493-UTR-H-canaliculatus_F_contig128:56904..57018Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig128 56905..57018 +
1696845645.1672955-UTR-H-canaliculatus_F_contig128:56904..570181696845645.1672955-UTR-H-canaliculatus_F_contig128:56904..57018Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig128 56905..57018 +
1622929001.321038-UTR-H-canaliculatus_F_contig128:57548..578031622929001.321038-UTR-H-canaliculatus_F_contig128:57548..57803Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig128 57549..57803 +
1696845645.1949794-UTR-H-canaliculatus_F_contig128:57548..578031696845645.1949794-UTR-H-canaliculatus_F_contig128:57548..57803Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig128 57549..57803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929001.2900217-CDS-H-canaliculatus_F_contig128:57018..570671622929001.2900217-CDS-H-canaliculatus_F_contig128:57018..57067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 57019..57067 +
1696845645.1767006-CDS-H-canaliculatus_F_contig128:57018..570671696845645.1767006-CDS-H-canaliculatus_F_contig128:57018..57067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 57019..57067 +
1622929001.3046198-CDS-H-canaliculatus_F_contig128:57123..575481622929001.3046198-CDS-H-canaliculatus_F_contig128:57123..57548Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 57124..57548 +
1696845645.1856663-CDS-H-canaliculatus_F_contig128:57123..575481696845645.1856663-CDS-H-canaliculatus_F_contig128:57123..57548Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 57124..57548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig128.2329.1

>prot_H-canaliculatus_F_contig128.2329.1 ID=prot_H-canaliculatus_F_contig128.2329.1|Name=mRNA_H-canaliculatus_F_contig128.2329.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=158bp
MENDLVFRGWGVGLVYERTALNAGKIEPLSSTASDRGTPEMRRALFRNQA
LSTKTNPYQSDPDLACPNPRVRRVLEVMRMFLWRHRLQEENTALQSRPST
AMASLRWLVSHRREQRSLTQRDASQRPSPQRPKQRRTRRTRTAHFGPSSR
GVKKQEH*
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mRNA from alignment at H-canaliculatus_F_contig128:56905..57803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig128.2329.1 ID=mRNA_H-canaliculatus_F_contig128.2329.1|Name=mRNA_H-canaliculatus_F_contig128.2329.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=899bp|location=Sequence derived from alignment at H-canaliculatus_F_contig128:56905..57803+ (Hapterophycus canaliculatus Oshoro5f female)
CCCTCAATTGGTCAGCGAAATACGGTCGGGGTTGGGGCTTGATTTGTTTT
GGAACAGACGTTCTTGAGGACGGACGTGGCGTGGGGCCTGGCCCCCTCCA
CCGTTAAAAACACGATGGAAAATGACCTTGTGTTCAGGGGGTGGGGGGTG
GGATTGGTGTACGAAAGATGTGGGAAGGACGCCTACAACGAGGAACGTGG
TAAAACGAAAATACTTCCAAACGGACGGCACTCAACGCGGGAAAAATAGA
GCCTCTTTCTTCGACGGCCTCCGACCGTGGAACTCCCGAGATGCGCCGAG
CTTTGTTCCGCAACCAAGCACTGTCGACGAAAACAAACCCCTACCAGTCC
GATCCCGACCTCGCATGCCCCAACCCCCGTGTGCGGCGAGTCCTGGAGGT
TATGAGAATGTTCCTTTGGCGTCACCGGTTACAGGAAGAGAACACTGCCC
TCCAAAGCCGTCCCTCCACAGCCATGGCGTCGCTGCGGTGGCTGGTTTCC
CACAGGCGCGAGCAGCGCTCGCTAACGCAGCGTGATGCGTCACAACGACC
GTCTCCTCAAAGGCCGAAGCAACGGCGAACACGCCGCACACGCACCGCAC
ACTTCGGCCCTTCTTCGCGAGGAGTAAAAAAACAAGAACACTAGCGCCGA
CCTCGGATTTCGTGGCGGATGTTCTGACATCACTAGACTAGCTAGAAAAC
GACGCGCACGGAGATCAAAAGTGCGTGCGATCTGGCTCGGGGTTCGAATC
GATTTCGTCCTCTCTGGAGCGCGTTCGCCGCGAACATCGAACGTTTACCA
CTCCACAGCTAAAAACAAAACCAAACATATCACGACTCCACCGTTGCCTC
ACATTTGTGGACGCGATCTGGGTTCCCATTTCTTGATACCCGGATGTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig128:56905..57803+

>mRNA_H-canaliculatus_F_contig128.2329.1 ID=mRNA_H-canaliculatus_F_contig128.2329.1|Name=mRNA_H-canaliculatus_F_contig128.2329.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=948bp|location=Sequence derived from alignment at H-canaliculatus_F_contig128:56905..57803+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAAATGACCTTGTGTTCAGGGGGTGGGGGGTGGGATTGGTGTACGA
TGGAAAATGACCTTGTGTTCAGGGGGTGGGGGGTGGGATTGGTGTACGAA
CGGACGGCACTCAACGCGGGAAAAATAGAGCCTCTTTCTTCGACGGCCTC
CGACCGTGGAACTCCCGAGATGCGCCGAGCTTTGTTCCGCAACCAAGCAC
TGTCGACGAAAACAAACCCCTACCAGTCCGATCCCGACCTCGCATGCCCC
AACCCCCGTGTGCGGCGAGTCCTGGAGGTTATGAGAATGTTCCTTTGGCG
TCACCGGTTACAGGAAGAGAACACTGCCCTCCAAAGCCGTCCCTCCACAG
CCATGGCGTCGCTGCGGTGGCTGGTTTCCCACAGGCGCGAGCAGCGCTCG
CTAACGCAGCGTGATGCGTCACAACGACCGTCTCCTCAAAGGCCGAAGCA
ACGGCGAACACGCCGCACACGCACCGCACACTTCGGCCCTTCTTCGCGAG
GAGTAAAAAAACAAGAACACTAGAACGGACGGCACTCAACGCGGGAAAAA
TAGAGCCTCTTTCTTCGACGGCCTCCGACCGTGGAACTCCCGAGATGCGC
CGAGCTTTGTTCCGCAACCAAGCACTGTCGACGAAAACAAACCCCTACCA
GTCCGATCCCGACCTCGCATGCCCCAACCCCCGTGTGCGGCGAGTCCTGG
AGGTTATGAGAATGTTCCTTTGGCGTCACCGGTTACAGGAAGAGAACACT
GCCCTCCAAAGCCGTCCCTCCACAGCCATGGCGTCGCTGCGGTGGCTGGT
TTCCCACAGGCGCGAGCAGCGCTCGCTAACGCAGCGTGATGCGTCACAAC
GACCGTCTCCTCAAAGGCCGAAGCAACGGCGAACACGCCGCACACGCACC
GCACACTTCGGCCCTTCTTCGCGAGGAGTAAAAAAACAAGAACACTAG
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