mRNA_H-canaliculatus_F_contig128.2327.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig128.2327.1
Unique NamemRNA_H-canaliculatus_F_contig128.2327.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig128.2327.1 vs. uniprot
Match: D8LKM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM1_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.180e-52
Identity = 132/164 (80.49%), Postives = 137/164 (83.54%), Query Frame = 1 
Query:    1 MSEDGAERRRRLKALKDKANKSIKFRNYRPQDTTIRQQALESK-------GIATKGANKGDAAAEASTKLAKGEXXXXXXXXXXXXXXXXXAPAPSLIQQELKKQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMAEEAANASSSSE 471
            MSE GAERR RLKALK+KANKSIKFRNYRPQD  IRQQAL+S        G  + GANKG+ AA  S K   G XXXXXXXXXXXXXXXXXAP  SLIQQELKKQKETQDE ELNIAPKKANWDLKRDVEKKLEKL+RRTQRAIVEIIRERMAEEAANASSS E
Sbjct:    1 MSESGAERRSRLKALKEKANKSIKFRNYRPQDAAIRQQALDSSKAGEPTSGSGSGGANKGEGAASPSGKSMGGXXXXXXXXXXXXXXXXXXAPESSLIQQELKKQKETQDEGELNIAPKKANWDLKRDVEKKLEKLDRRTQRAIVEIIRERMAEEAANASSSGE 164
[Close]
BLAST of mRNA_H-canaliculatus_F_contig128.2327.1 vs. uniprot
Match: A0A835ZFC6_9STRA (Cwf18 pre-mRNA splicing factor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFC6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.470e-16
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:  265 SLIQQELKKQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMAEEAANASSSSEXXXXXXXXXXXXXXEEDSGSSSEEE 546
            S+I+QEL+K K+ QDE  LNIAP+K +WDLKRD   KLEKLNRRTQRAIV+I+RE+MAEEAA  S       XXXXXXX    E+ SGSSSEEE
Sbjct:   86 SIIKQELRKVKDGQDEGTLNIAPRKPDWDLKRDAAPKLEKLNRRTQRAIVQILREKMAEEAAQGSXXX----XXXXXXXEESGEDGSGSSSEEE 175
[Close]
BLAST of mRNA_H-canaliculatus_F_contig128.2327.1 vs. uniprot
Match: A0A7S2W1E1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1E1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.360e-14
Identity = 64/158 (40.51%), Postives = 88/158 (55.70%), Query Frame = 1 
Query:    1 MSEDGAE-RRRRLKALKDKANKSIKFRNYRPQDTTIRQQALESK-------GIATKGANKGDAAAEASTKLAKGEXXXXXXXXXXXXXXXXXAPAPSLIQQELKKQKETQDEEE-LNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMAEEA 447
            M  + AE RR+RL+ +       +KFRNYRPQDT ++ +A+ +         +  + A   DA++  S K                        A ++IQQELK+    Q  EE LNIAP+K NWDLKRDV KK+EKLN+RTQ AIV++I+ER+  EA
Sbjct:    5 MEPESAEARRKRLRTMAAGGASKLKFRNYRPQDTDLKTKAVAAALPKPILDEVQAQPAPDKDASSVQSRK------------------------ATAVIQQELKEHVAEQGGEEVLNIAPRKPNWDLKRDVAKKMEKLNKRTQLAIVDLIKERIEREA 138
[Close]
BLAST of mRNA_H-canaliculatus_F_contig128.2327.1 vs. uniprot
Match: A0A0K8TK94_TABBR (Putative cwf18 pre-mrna splicing factor (Fragment) n=1 Tax=Tabanus bromius TaxID=304241 RepID=A0A0K8TK94_TABBR)

HSP 1 Score: 69.3 bits (168), Expect = 7.440e-11
Identity = 53/155 (34.19%), Postives = 75/155 (48.39%), Query Frame = 1 
Query:    1 MSEDGAERRRRLKALKDKANKSIKFRNYRPQDTTIRQQALESKGIATKGANKGDAAAEASTKLAKGEXXXXXXXXXXXXXXXXXAPAPSLIQQELKKQKET-------QDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMAEE 444
            + E+  +R+ RLK L+ KA  +  FR+Y+PQD TI +Q LE+K +                                             ++ E+K Q E        +D +  N+AP+K +WDLKRDV KKLEKL RRTQ+ I E+IRER+  E
Sbjct:    3 LEEESLKRKERLKNLRKKAENTPIFRSYKPQDKTINEQILENKTVVR-------------------------------------------LEDEVKDQLEILKTPIVIEDIDIANLAPRKPDWDLKRDVAKKLEKLERRTQKTIAELIRERLKNE 114
[Close]
BLAST of mRNA_H-canaliculatus_F_contig128.2327.1 vs. uniprot
Match: A0A1X2IBU1_9FUNG (mRNA splicing factor n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IBU1_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 2.850e-10
Identity = 59/165 (35.76%), Postives = 83/165 (50.30%), Query Frame = 1 
Query:    1 MSEDGAERRRRLKALK--------------DKANKSIKFRNYRPQDTTIRQQALESKGIATKGANKGDAAAEASTKLAKGEXXXXXXXXXXXXXXXXXAPAPSLIQQELKKQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMAEEAAN 453
            M E+   R+ RL+A++              D++ K +KFR+Y P D  ++Q       IAT   N     AE  TK                       P  +L +     +KE +D +  N+APKKANWDL+RDVEKKLEKL+RRTQ+AI+E IR+R+  E  +
Sbjct:    1 MEEEARRRKDRLEAIRKRKQASAPSNTRVDDESIKDLKFRSYTPTDENLKQHV----SIATP--NHIKITAETETK---------------------EIPTQTLAEAA---EKEKEDVDLFNLAPKKANWDLRRDVEKKLEKLDRRTQKAILETIRQRLTNEGGS 135
[Close]
BLAST of mRNA_H-canaliculatus_F_contig128.2327.1 vs. uniprot
Match: A0A7S2GKY8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GKY8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.630e-10
Identity = 53/129 (41.09%), Postives = 71/129 (55.04%), Query Frame = 1 
Query:   67 IKFRNYRPQDTTIRQQALESKGIATKGANKGDAAAEASTKLAKGEXXXXXXXXXXXXXXXXXAPAPSLIQQELKK-QKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMAEEAA 450
            I+FRNYRPQD  ++ + ++   +        DAA   + +  K                         IQ+E+   QKE   ++ +NIAPKK NWDLKRDV KK+EKLNRRTQ AIVE+I+ER+  EAA
Sbjct:   18 IRFRNYRPQDKKLKVETVK---VPLPKPLLDDAARSEAVRAEKENGPTPYAKKNDNPEIEDP------IQREIAAHQKEQGGDDLINIAPKKPNWDLKRDVMKKMEKLNRRTQMAIVELIKERIEREAA 137
[Close]
BLAST of mRNA_H-canaliculatus_F_contig128.2327.1 vs. uniprot
Match: A0A7S2CFR4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CFR4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.590e-10
Identity = 59/150 (39.33%), Postives = 79/150 (52.67%), Query Frame = 1 
Query:    1 MSEDGAERRRRLK-ALKDKANKSIKFRNYRPQDTTIRQQALES---KGIATKGANKGDAAAEASTKLAKGEXXXXXXXXXXXXXXXXXAPAPSLIQQELKKQKETQDEEEL-NIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERM 435
            M+E    RR+RL+ A  +     ++FRNYRPQD+ ++ ++ E+   K +        D  A    K A GE                       I+ E+K     Q   EL NIAPKK NWDLKRD+ KK++KLNRRTQ AIVEII+ER+
Sbjct:   22 MAETEDARRKRLRTAASEGGAPKLRFRNYRPQDSKLKIESAETPLPKPVL-------DDVANTVPKAAPGEEPEKKKPKVE-----------DAIKAEIKAHVAEQGGNELLNIAPKKPNWDLKRDITKKMDKLNRRTQVAIVEIIKERI 153
[Close]
BLAST of mRNA_H-canaliculatus_F_contig128.2327.1 vs. uniprot
Match: S2JYD1_MUCC1 (Uncharacterized protein n=5 Tax=Mucor TaxID=4830 RepID=S2JYD1_MUCC1)

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-9
Identity = 63/177 (35.59%), Postives = 88/177 (49.72%), Query Frame = 1 
Query:    1 MSEDGAERRRRLKALK--------------DKANKSIKFRNYRPQDTTIRQQALESKGIATKGANKGDAAAEASTKLAKGEXXXXXXXXXXXXXXXXXAPAPSLIQQELKKQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERM--------AEEAANASSS 465
            M ++  +R+ RL A++              D+A K++KFR+Y P D  ++Q    +K   T   N  +   +  TK A                          + Q  +KQKE  D    N+APKK NWDLKRDVEKKLE+L+RRTQRAI EIIR+R+        AE+ ANA ++
Sbjct:    1 MDQEAQKRKERLAAIRKRKLGNAAQNDRTSDEAEKALKFRSYTPNDEKLQQHVDIAKP--TDIGNTLETETKDFTKEA--------------------------LAQAAEKQKEEVDL--FNLAPKKPNWDLKRDVEKKLERLDRRTQRAIYEIIRQRLEGDKDATLAEKVANAEAT 147
[Close]
BLAST of mRNA_H-canaliculatus_F_contig128.2327.1 vs. uniprot
Match: A0A8H7BMD5_9FUNG (Coiled-coil domain-containing protein 12 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BMD5_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 2.220e-9
Identity = 54/147 (36.73%), Postives = 79/147 (53.74%), Query Frame = 1 
Query:   22 RRRRLKALKDKANKSIKFRNYRPQDTTIRQQALESKGIATKGANKGDAAAEASTKLAKGEXXXXXXXXXXXXXXXXXAPAPSLIQQELKKQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMAEEAANASS 462
            R+R+L +  DK+++ + FR+Y P D  ++    E+  I T      D   E      K                    P  +L +  +K+++E    +  N+APKK NWDLKRDVEKKLEKL+RRT+RAI+EIIRER+  E  + +S
Sbjct:   16 RKRKLGSTSDKSDRVLSFRSYTPNDEKLK----ENVNIVTP-----DDIGETVESETK------------------HIPKETLEKAAIKEKEEV---DLFNLAPKKPNWDLKRDVEKKLEKLDRRTKRAILEIIRERLMSENGDKTS 132
[Close]
BLAST of mRNA_H-canaliculatus_F_contig128.2327.1 vs. uniprot
Match: A0A834NN07_VESGE (Uncharacterized protein n=6 Tax=Vespinae TaxID=7439 RepID=A0A834NN07_VESGE)

HSP 1 Score: 66.2 bits (160), Expect = 2.270e-9
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 1 
Query:    1 MSEDGAERRRRLKALKDKANKSI-------------KFRNYRPQDTTIRQQALESKGIATKGANKGDAAAEASTKLAKGEXXXXXXXXXXXXXXXXXAPAPSLIQQELKKQKETQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMAEEAANASS 462
            + E+  +R+ RL+ALK K  ++              KFR+Y+PQD +++++ LE        A  GD  +E   +L+                    A    ++ +EL         +  N+AP+K +WDLKRDV KKLEKL RRTQ+AI E+IRER+ ++  N ++
Sbjct:    9 LVEEALKRKERLQALKKKNEEAKDINADSPSKLPMPKFRSYKPQDESLKEKVLED-------AKPGDVESEVQDQLS--------------------AAKSKVVIEEL---------DISNLAPRKPDWDLKRDVSKKLEKLERRTQKAIAELIRERLKQDQHNLAT 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig128.2327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKM1_ECTSI1.180e-5280.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZFC6_9STRA3.470e-1665.96Cwf18 pre-mRNA splicing factor-domain-containing p... [more]
A0A7S2W1E1_9STRA8.360e-1440.51Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0K8TK94_TABBR7.440e-1134.19Putative cwf18 pre-mrna splicing factor (Fragment)... [more]
A0A1X2IBU1_9FUNG2.850e-1035.76mRNA splicing factor n=1 Tax=Absidia repens TaxID=... [more]
A0A7S2GKY8_9STRA3.630e-1041.09Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2CFR4_9STRA7.590e-1039.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
S2JYD1_MUCC11.400e-935.59Uncharacterized protein n=5 Tax=Mucor TaxID=4830 R... [more]
A0A8H7BMD5_9FUNG2.220e-936.73Coiled-coil domain-containing protein 12 n=1 Tax=A... [more]
A0A834NN07_VESGE2.270e-932.34Uncharacterized protein n=6 Tax=Vespinae TaxID=743... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig128contigH-canaliculatus_F_contig128:20643..25735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.7
Seed ortholog evalue2.4e-45
Seed eggNOG ortholog2880.D8LKM1
Preferred nameCCDC12
KEGG koko:K12871
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0070035,GO:0071014,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.RNA splicing
EggNOG OGsKOG3407@1,KOG3407@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionmRNA splicing factor, Cwf18
Ec32 orthologEc-16_003480.1
Exons4
Model size1316
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig128.2327.1prot_H-canaliculatus_F_contig128.2327.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig128 20643..24971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.086827-CDS-H-canaliculatus_F_contig128:20642..208401622929002.086827-CDS-H-canaliculatus_F_contig128:20642..20840Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 20643..20840 +
1696845645.368959-CDS-H-canaliculatus_F_contig128:20642..208401696845645.368959-CDS-H-canaliculatus_F_contig128:20642..20840Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 20643..20840 +
1622929002.0990956-CDS-H-canaliculatus_F_contig128:22521..226201622929002.0990956-CDS-H-canaliculatus_F_contig128:22521..22620Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 22522..22620 +
1696845645.3813953-CDS-H-canaliculatus_F_contig128:22521..226201696845645.3813953-CDS-H-canaliculatus_F_contig128:22521..22620Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 22522..22620 +
1622929002.1085136-CDS-H-canaliculatus_F_contig128:23725..238691622929002.1085136-CDS-H-canaliculatus_F_contig128:23725..23869Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 23726..23869 +
1696845645.3926961-CDS-H-canaliculatus_F_contig128:23725..238691696845645.3926961-CDS-H-canaliculatus_F_contig128:23725..23869Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 23726..23869 +
1622929002.1216033-CDS-H-canaliculatus_F_contig128:24860..249711622929002.1216033-CDS-H-canaliculatus_F_contig128:24860..24971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 24861..24971 +
1696845645.4029865-CDS-H-canaliculatus_F_contig128:24860..249711696845645.4029865-CDS-H-canaliculatus_F_contig128:24860..24971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 24861..24971 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.1359596-UTR-H-canaliculatus_F_contig128:24971..257351622929002.1359596-UTR-H-canaliculatus_F_contig128:24971..25735Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig128 24972..25735 +
1696845645.4136195-UTR-H-canaliculatus_F_contig128:24971..257351696845645.4136195-UTR-H-canaliculatus_F_contig128:24971..25735Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig128 24972..25735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig128.2327.1

>prot_H-canaliculatus_F_contig128.2327.1 ID=prot_H-canaliculatus_F_contig128.2327.1|Name=mRNA_H-canaliculatus_F_contig128.2327.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=184bp
MSEDGAERRRRLKALKDKANKSIKFRNYRPQDTTIRQQALESKGIATKGA
NKGDAAAEASTKLAKGEEEKEEEEEEEEEGGKRRAPAPSLIQQELKKQKE
TQDEEELNIAPKKANWDLKRDVEKKLEKLNRRTQRAIVEIIRERMAEEAA
NASSSSEEGSGSESGSGSSSGEEDSGSSSEEEE*
back to top

mRNA from alignment at H-canaliculatus_F_contig128:20643..25735+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig128.2327.1 ID=mRNA_H-canaliculatus_F_contig128.2327.1|Name=mRNA_H-canaliculatus_F_contig128.2327.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5093bp|location=Sequence derived from alignment at H-canaliculatus_F_contig128:20643..25735+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCGAGGATGGGGCTGAACGAAGGAGACGACTGAAAGCCCTGAAAGA
TAAAGCCAACAAGAGCATAAAGTTCAGAAACTATCGCCCGCAAGATACCA
CCATCAGACAGCAGGCCCTCGAAAGCAAGGGGATCGCAACTAAGGGCGCC
AACAAGGGCGATGCCGCTGCCGAGGCATCAACCAAACTAGCAAAAGGTGT
GTCAATCTCTTCTTCATATGACTGTGTGCATGCGGAATGTCAGGTGTTCA
GGAAACGAGGCTCAGCCCCTGACTACTGAGACATCAACTGAGTGTGCCCC
TTCTCTTGATACAAGTGCCTGCTAGAAGACCCCCAGATGCTCAGACTTCC
ATCAGATCCTCCCCAGTCCCCCCCAGTCCGACGTATTTTTTGCAACCGCG
GTCGCTCTTTCACTCTAAAAAGCATCCGAAACCTCTGTTGCGAGGTATTT
CCGTCGCTCACAACAGCCCGGGTAGAAGGACCCGCATGATCGACATGAAC
AGACGTAGTTCCCCCCCAGTATCGAGCATAGCCTTGAAGTCTTCGTGATC
CAACCGACCGAGTTTCGGGTAAATGGCAAACGGGACTCCTGTGAACCACT
TGCGGCGTACGAACGCTTGTTGAGAAACGCAGGCTGTCTCGAGCAGTCCG
TGTCGCTGCCTTTCGGTAGCCGAGCTTGCCATGCAAGTGTCGTGGTGGGC
TATGGTCCAAACCGCTGATGCGAGAAGTGTGGACAGTAGTGCGGGAGGTG
CCTTTTCCAGGGTACGCCGAAAAACAAACATGAGGGTGCAGCTACCCAGC
GACATCAGTACTCCGGAGTATCAGTTTACGACCGGCCCAGAGCTCGTGAA
CAGCAGTCCCAGTTTCCCGAGAGTTTGCAAACCTACGGCAAGCACGAAAT
CTAGATCTGTGGTACTTTCGAGGAGTGCTCTACGGGGGACTGGTCAATTT
TGGAAGGCGGGCATCCTCTCCAGAACTCGGAGGACTTTCGTGCAACGGTA
TGCGACGCTGTTGTACCCGCGCCTGGAGTTCTCCACGAAGGGTACTTCTT
CAAGCTGCATGACCCAAACCCAGTTACCGTTTGGCACGGCTTGCAGAACT
CCCACACGGCGCTCGAGGCCCTGCGAACATGCCGGACTCTTAGAAACGGG
TATCGAGGCACGGGTACGGAGGTAGGGGTACCGCCATGGTAATCGCGAAG
TGCAACTGGGTGTGCCTTCAGATACACGAGGTAACCTACAGTTTTTCATT
TCTTGGGGAATTCCAGGCTTATGCTGCCCCGGATGTGGCGTGGCCCTGGG
TATGGCGTAGGTGAAGAATCCTTTCCAGATTTCACGTACGGCATGAAAGT
GCTCACAGGCCTCAAGGAAATATGGAGTAGGAAGTGAAGTCGCTCCTTCG
GACATTACAGACCTTTCAAGCGCGGCACTGGAGGTCAAACACAGGCTGCG
CATGTTTCGCGCGCGGTGTGCCAGCCCGTACGCGTGCCCTTACCTTCAAC
TGCACCGGTAAGCACAACGTGCCTGAGTGATTGTGGAGGGTGTGGCCGCG
CCTCAGGTATGGGAAGTCTTCCAGTATTCACAAAAATTCTGGGTACAGCA
TGGGAAGGCTTCCAGAGCTCATGCGCGTGTCGGGTACGCGCAACTCCCGA
CCAAATACCCTCCGGTATGTTCACAAGAACGCGCACCCCATAAGGAAAAA
CTCCTCAAATATCTGTGTACTTTGGAAAATTGCGGGCCAAGATCGCATTC
GTCATTCTGTAGCTGCAAAAAGGTGTCTGGCGGAGATGGAAATCTAACTT
GTAACGCTCTAAGTGTCCAACCACCCGACGCGGGTCATCCACCCGAAATG
ATTCTTAAGGTCGAGCAACCGGACAGGAGGAGGAGGAAAAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGGAGGAAAGCGAAGAGCGCCGGCGCCGAGCTT
GATCCAGCAAGAGCTCAAGAAACAGAAGGTTCGGCGAAATCAGGGTGCAC
ACGCGGCCTGCGCTAGTTGAGGGTGGCGGCACATAAAACAGGGGCGTCTG
GTTGGAAAACTAAACCTGCCCGACAGTGTCAGACCCGCTTAAAGTCGCTG
CCCCATTGTCTTCCGACTGTTAGGGAACATGTATGTGGGGATGCTGGAGA
CGGCTGCTTATTGACGCAAAGCCATGCGCGCACACACACTCACACAAGCT
TGCTGCCCAAGGGGCATCCAAGGACGAAGTGTCACCATGAAGAAAAAGCG
CGAGTGATGCGTACCAGGTAGAGGGCTGAATCTGCCCGTCCGGGCCTGAA
GCTTTTTGTCGCATCTCTTCCAAAGGCCCCTTGTCAGGGGGCTTTGGTGC
GCCGCTGAGACCAAGTCCTGTCGCTAGTAACACTAGTAGTAGTCGCTGAC
ACGACTTCTTCAATCAGGCTGTTGATTGATCAAGGACGATGCTATAGTTG
GTAAAAAATCATCTTGTTCTGACGTACACGTGGGTGGTTGTGACCCTCAT
AGTGGGCGGATGCTGGCGACAACCTGACCATCGAAGCGCGTTTTAAAAGT
AGCGAGAGGGCTGCTCTTTATTGTCGCACAATCTTTTCGTCCCAGAGCCA
CTCTTCGGCGGAAACCATTTGTGTCCCATAGCAAATCCGCGGACGGTTTG
TTTTTGTCCATCTGAGTCCCGCTTGACTATTTTCACGAGCTCAAGGTCGC
CCGAGCATGACAGAGGTATGATTTTGAGTCGAACAATCCTGAAAGGAGTG
GAAAGCTCTCGTGGCATAGGATCGTCTACGAAGACTTGTATCGCGGCAGC
ATCGTTGGGCACTAGCCTTGCAGCATCCTCGTTTTCATCTCTCTCGTCGA
TTATGTGGTAACCTGAAGCAACCTGAAACAACGGATACAATGGTCCAGGG
GTTCTGATTTTGACCTGAAAAATACGCGGCTACACTCGTTGTCGGACATA
CACCTCACAAAGTCAATCTCGCGTGGAACTTGGCCCCGCGGCCGGACTCG
CCAAGAGCGTGAACGGAGAAACGTGTCTGCCCGCCGCCGCCCCCTGGCTT
TCTTGCTTTTTGTGCGCTCGCTTGTCGTTGCAGGAGACGCAGGACGAGGA
GGAGTTGAACATCGCCCCGAAGAAGGCGAATTGGGACCTCAAGAGAGACG
TGGAGAAAAAGCTGGAGAAGCTCAACCGGAGGACCCAGCGCGCGATCGTC
GAGATAATCCGCGAGCGCATGGCAGAGGTTAGTGTTTCTTCCAACCACCG
CTCGTCCGCGAGACCTCTCGCCGTGCCGAGAGGACTTTACCCTGGAGGGA
AAGGGAACGAAACAGACAGTGCCATCCTTGTTGCTCGACGAAGCGTAATT
ATTTAGCGGATGAGAGGAATTGACGCGTTGGCGACTCGATGGTGAACTCT
AAGCTTCGATGGGATGGTGGACCAGCAACGTTGTTTCGGTGGCATTCTGT
CCGTTCAACCAGTGTTCTCGGATGTTGTCGAATGTGTAGCACGCCCGTCG
TGTGGCGACGCCAATCGAGGCTACCACGTGCCGTGCGCATATGCGGGGCT
GAGCGAGGCCTCTATCCGTACGCGATATGTCTTTGGATTCAAGTCCTGGG
ATGCGTTGAATGATGCTTAACTTTGAGCTTGGTTGTTGGTGATGTGCGTC
CAAGCCTGGCTCAGGTTCGGTACAAGTCTTGTTCGTATGTTTGGTCTGGT
GTGTGTTCGTTCGTTTCCAAACCCTTGGGATATGGCTATCTCCATGTCCC
ACCGCGGTTTCATCTTGCCTTCCACGTAAAGCGAGGCCCTGCGCTCTGAC
GCCTGTTGGTTGTTTACGATGCCGCTGCATGCCGTGGTCATGGTGATTGA
AACCCGCCGTTCGTTCCACCTTTCCGATCACTGGTACTGCGAAGACAAGA
AAAAGGCTAGATTTGTTTTCGTAGTCTGGTAGTTGTTTACTTGCCGGCGA
CTTCTACAATTCTCACCCGACACAAGAGGAAAAGATATGATGTATCGAAC
ACTTGCTTCTTCCCTCTCGAACCTTTCCTTCTTCTCTCTAGAACCACCCC
GGCCCGAGCCGATCGATTCCGCGACAAGCCACAGCAGCAGCTTTTTTCTT
TTGCGTCTCAATGAAAGCAGTACATCTGCGTCAACAACAAGTGAATCTAC
GGCCTCATCATGACGCCCCCCCCCCCCCTCCCGCCCTCGGTCCCGCCCGG
TCTTGTGCTTCCCTGCAGGAGGCCGCGAATGCGAGTAGTAGCAGCGAGGA
GGGCAGCGGGAGTGAGAGCGGGAGCGGCAGCAGCAGCGGGGAAGAAGACA
GCGGGAGCAGCTCTGAGGAAGAGGAGTAGTGTATGGGTCCGGGTGTAGCG
ATAGATCAGATGCATGCTTGTTTGTCCCCCCCCCCGCCCCTGTGCTCGTT
GTTGGCGCTTGCTTCTTTGGGGCTGCCGGACACGGCAGCTTTTGGTCTTT
GTTTGCGGGCTGCGTCGTTCTGTGCTCGCGTCACGGACACGGCGTGACGC
CGCTGGCGTCCGTCCTGTAAGAGTTCCTTATCTCTGTGGGTATTCCGCGA
AGGCTGTGTCGGCGCCGTTGGCGCGTGCAAAACGCGCCGAGGAGCCCGTC
GCTGGCGTCCCAGAGGAGCGTGGATTTGGATTTGAATTGCGTGATCTGCT
GCCGTGCACGGGTGCCGGTGGTGACGCGCAACGCCGCGGGTCTTAAGGAT
GGTGGCTGGATTTATCCAAGCGGAGTCGCGCCGCCGTGCTGACAGCTTCT
CGCAGGACGGCCGCGGCCGCGGCTGCGCCATTCCCTCGTCTGTGGAGAAG
TGTTGTTGCAGTGGCAGCAATAAGCGAATGGTCCCGCTTACTTTCATTCA
GCTTGGACGCGCATTTACCGTGGCTAGGGGTGCCCTCTTTGTCCAAGGCA
GAGTCATCGCGAGTGAAGTTGCCAACACGTGTGCGCTTGTGGTGGTCTGA
ATGGACAACCCACTGTGTGACAATTGAAGTGTACAATATGCCGAGGGCTT
TCTCACCGATGGTGGCCGCTGTGCAAAACAACTTCAAGATGGTGGGCTTT
GGCTTCCTGCCTGTGTCGAAGTTTTCATGGTCGAGGACCCGAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig128:20643..25735+

>mRNA_H-canaliculatus_F_contig128.2327.1 ID=mRNA_H-canaliculatus_F_contig128.2327.1|Name=mRNA_H-canaliculatus_F_contig128.2327.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1104bp|location=Sequence derived from alignment at H-canaliculatus_F_contig128:20643..25735+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCGAGGATGGGGCTGAACGAAGGAGACGACTGAAAGCCCTGAAAGA
TAAAGCCAACAAGAGCATAAAGTTCAGAAACTATCGCCCGCAAGATACCA
CCATCAGACAGCAGGCCCTCGAAAGCAAGGGGATCGCAACTAAGGGCGCC
AACAAGGGCGATGCCGCTGCCGAGGCATCAACCAAACTAGCAAAAGGTAT
GAGCGAGGATGGGGCTGAACGAAGGAGACGACTGAAAGCCCTGAAAGATA
AAGCCAACAAGAGCATAAAGTTCAGAAACTATCGCCCGCAAGATACCACC
ATCAGACAGCAGGCCCTCGAAAGCAAGGGGATCGCAACTAAGGGCGCCAA
CAAGGGCGATGCCGCTGCCGAGGCATCAACCAAACTAGCAAAAGGTGAGG
AGGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGAAAGCGAAGA
GCGCCGGCGCCGAGCTTGATCCAGCAAGAGCTCAAGAAACAGAAGGAGGA
GGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGAAAGCGAAGAG
CGCCGGCGCCGAGCTTGATCCAGCAAGAGCTCAAGAAACAGAAGGAGACG
CAGGACGAGGAGGAGTTGAACATCGCCCCGAAGAAGGCGAATTGGGACCT
CAAGAGAGACGTGGAGAAAAAGCTGGAGAAGCTCAACCGGAGGACCCAGC
GCGCGATCGTCGAGATAATCCGCGAGCGCATGGCAGAGGAGACGCAGGAC
GAGGAGGAGTTGAACATCGCCCCGAAGAAGGCGAATTGGGACCTCAAGAG
AGACGTGGAGAAAAAGCTGGAGAAGCTCAACCGGAGGACCCAGCGCGCGA
TCGTCGAGATAATCCGCGAGCGCATGGCAGAGGAGGCCGCGAATGCGAGT
AGTAGCAGCGAGGAGGGCAGCGGGAGTGAGAGCGGGAGCGGCAGCAGCAG
CGGGGAAGAAGACAGCGGGAGCAGCTCTGAGGAAGAGGAGTAGGAGGCCG
CGAATGCGAGTAGTAGCAGCGAGGAGGGCAGCGGGAGTGAGAGCGGGAGC
GGCAGCAGCAGCGGGGAAGAAGACAGCGGGAGCAGCTCTGAGGAAGAGGA
GTAG
back to top