mRNA_H-canaliculatus_F_contig128.2325.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig128.2325.1
Unique NamemRNA_H-canaliculatus_F_contig128.2325.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig128.2325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig128contigH-canaliculatus_F_contig128:7704..8529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size826
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig128.2325.1prot_H-canaliculatus_F_contig128.2325.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig128 8023..8445 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929001.4197764-UTR-H-canaliculatus_F_contig128:7703..80221622929001.4197764-UTR-H-canaliculatus_F_contig128:7703..8022Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig128 7704..8022 +
1696845645.204237-UTR-H-canaliculatus_F_contig128:7703..80221696845645.204237-UTR-H-canaliculatus_F_contig128:7703..8022Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig128 7704..8022 +
1622929001.4469867-UTR-H-canaliculatus_F_contig128:8445..85291622929001.4469867-UTR-H-canaliculatus_F_contig128:8445..8529Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig128 8446..8529 +
1696845645.2214136-UTR-H-canaliculatus_F_contig128:8445..85291696845645.2214136-UTR-H-canaliculatus_F_contig128:8445..8529Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig128 8446..8529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929001.4338076-CDS-H-canaliculatus_F_contig128:8022..84451622929001.4338076-CDS-H-canaliculatus_F_contig128:8022..8445Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 8023..8445 +
1696845645.2127843-CDS-H-canaliculatus_F_contig128:8022..84451696845645.2127843-CDS-H-canaliculatus_F_contig128:8022..8445Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig128 8023..8445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig128.2325.1

>prot_H-canaliculatus_F_contig128.2325.1 ID=prot_H-canaliculatus_F_contig128.2325.1|Name=mRNA_H-canaliculatus_F_contig128.2325.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=141bp
MSLRFVEAKKNTTPPSSPLPSSTGIDLLLEVREPQHGPERGVPSAFVVLL
RPGRCRMGQDVRRRTHTVQQRQPDCLLDNQPSHRSGRILVVITSSVLAEF
AIQRDLHRPLMGVCLCFLVAGVEGQSVSPPFQKADAVDTD*
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mRNA from alignment at H-canaliculatus_F_contig128:7704..8529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig128.2325.1 ID=mRNA_H-canaliculatus_F_contig128.2325.1|Name=mRNA_H-canaliculatus_F_contig128.2325.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=826bp|location=Sequence derived from alignment at H-canaliculatus_F_contig128:7704..8529+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGAAGTGAATGAATCTCACACAAAGTTCGGGGGCGGTCCTGTTTCACG
CCCCGGCGGATGGTGCCTTCCCCGGTTGTTGCTCCCGCCCACCTCAAGGC
GAACATACCGCAAGCGTGTTGTGGGCCAGCCACCCGAACACTCTTTCGAT
TACCTGCTGATTCCGCGTCGACATGCTCTCCACTGCAGCGTCCTCATCCA
TGGCCACACTTTTAAGCGCATGATAAAAACGGTGTAGAGCACTGTAGGTC
TGCGCATGCATTTACCTACGGTATGCACGGCAGTCAGTCACAGTCGCCCT
GAATCGAAACACGGTCCCCATGAGCCTACGTTTCGTCGAAGCTAAAAAAA
ACACGACTCCCCCCTCCTCCCCCCTGCCGTCCTCGACAGGAATCGATCTT
CTTCTCGAGGTTCGTGAGCCTCAACATGGTCCAGAACGCGGGGTACCATC
AGCCTTCGTTGTCCTTCTACGGCCGGGGCGGTGCCGGATGGGGCAGGACG
TTCGGCGACGAACTCACACCGTACAGCAGCGGCAACCAGATTGCCTCTTG
GACAACCAGCCCTCCCACCGTAGCGGCCGGATCTTGGTGGTGATCACGTC
CAGTGTCTTAGCAGAGTTTGCGATACAACGGGACTTGCACCGGCCGCTGA
TGGGGGTGTGCCTTTGTTTCCTGGTTGCAGGCGTAGAGGGCCAGTCGGTG
TCTCCGCCCTTCCAAAAAGCGGATGCTGTCGATACGGATTGAGAGGGTGC
TGGCAATTTCCCTCGTTAAGGCTGGCCACGGGATCACACGAACAGACACC
GGGACGATGATAACCCTTGCTGGTTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig128:7704..8529+

>mRNA_H-canaliculatus_F_contig128.2325.1 ID=mRNA_H-canaliculatus_F_contig128.2325.1|Name=mRNA_H-canaliculatus_F_contig128.2325.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=846bp|location=Sequence derived from alignment at H-canaliculatus_F_contig128:7704..8529+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCCTACGTTTCGTCGAAGCTAAAAAAAACACGACTCCCCCCTCCTC
CCCCCTGCCGTCCTCGACAGGAATCGATCTTCTTCTCGAGGTTCGTGAGC
CTCAACATGGTCCAGAACGCGGGGTACCATCAGCCTTCGTTGTCCTTCTA
CGGCCGGGGCGGTGCCGGATGGGGCAGGACGTTCGGCGACGAACTCACAC
CGTACAGCAGCGGCAACCAGATTGCCTCTTGGACAACCAGCCCTCCCACC
GTAGCGGCCGGATCTTGGTGGTGATCACGTCCAGTGTCTTAGCAGAGTTT
GCGATACAACGGGACTTGCACCGGCCGCTGATGGGGGTGTGCCTTTGTTT
CCTGGTTGCAGGCGTAGAGGGCCAGTCGGTGTCTCCGCCCTTCCAAAAAG
CGGATGCTGTCGATACGGATTGAATGAGCCTACGTTTCGTCGAAGCTAAA
AAAAACACGACTCCCCCCTCCTCCCCCCTGCCGTCCTCGACAGGAATCGA
TCTTCTTCTCGAGGTTCGTGAGCCTCAACATGGTCCAGAACGCGGGGTAC
CATCAGCCTTCGTTGTCCTTCTACGGCCGGGGCGGTGCCGGATGGGGCAG
GACGTTCGGCGACGAACTCACACCGTACAGCAGCGGCAACCAGATTGCCT
CTTGGACAACCAGCCCTCCCACCGTAGCGGCCGGATCTTGGTGGTGATCA
CGTCCAGTGTCTTAGCAGAGTTTGCGATACAACGGGACTTGCACCGGCCG
CTGATGGGGGTGTGCCTTTGTTTCCTGGTTGCAGGCGTAGAGGGCCAGTC
GGTGTCTCCGCCCTTCCAAAAAGCGGATGCTGTCGATACGGATTGA
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