mRNA_H-canaliculatus_F_contig12797.2322.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12797.2322.1
Unique NamemRNA_H-canaliculatus_F_contig12797.2322.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12797.2322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12797contigH-canaliculatus_F_contig12797:2719..3112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929000.6712894-CDS-H-canaliculatus_F_contig12797:2720..28021622929000.6712894-CDS-H-canaliculatus_F_contig12797:2720..2802Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12797 2721..2802 -
1696845645.0705373-CDS-H-canaliculatus_F_contig12797:2720..28021696845645.0705373-CDS-H-canaliculatus_F_contig12797:2720..2802Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12797 2721..2802 -
1622929000.6883824-CDS-H-canaliculatus_F_contig12797:3023..31121622929000.6883824-CDS-H-canaliculatus_F_contig12797:3023..3112Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12797 3024..3112 -
1696845645.0813534-CDS-H-canaliculatus_F_contig12797:3023..31121696845645.0813534-CDS-H-canaliculatus_F_contig12797:3023..3112Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12797 3024..3112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12797.2322.1prot_H-canaliculatus_F_contig12797.2322.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12797 2721..3112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12797.2322.1

>prot_H-canaliculatus_F_contig12797.2322.1 ID=prot_H-canaliculatus_F_contig12797.2322.1|Name=mRNA_H-canaliculatus_F_contig12797.2322.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
PLVVVAAGRTAGSGENEPPCLFWTARVVEGPVPLFGAALGSAWTRRSVCE
MGGPYSL
back to top

mRNA from alignment at H-canaliculatus_F_contig12797:2719..3112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12797.2322.1 ID=mRNA_H-canaliculatus_F_contig12797.2322.1|Name=mRNA_H-canaliculatus_F_contig12797.2322.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=394bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12797:2719..3112- (Hapterophycus canaliculatus Oshoro5f female)
CCTCTCGTTGTTGTTGCTGCTGGTCGGACGGCTGGATCTGGCGAAAACGA
GCCCCCCTGTCTATTTTGGACCGCGCGTGTGGTTGAAGGGCCGAGAAAAA
AGAGGACCAATGACGCGTTGACACTTGTGTAGATACTCTAACGCCCGTCC
CCCCGGTATCTCATCGCGTCCCATACGCACCCCCTCGCGTAGCCTAACCG
CGCACATCGTCCCTTATTTTTCTTTGCCTGTCAGTTCCCCTATTTTGTGC
GCCTCGCAATTTTCACGCTCTTTCTCTCGTACACACACCCTCCCTCTACC
CGCACTGCAGACCCGTGCCCCTCTTCGGCGCGGCTCTTGGATCTGCGTGG
ACGCGAAGGAGTGTGTGTGAGATGGGCGGGCCTTACAGCTTGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12797:2719..3112-

>mRNA_H-canaliculatus_F_contig12797.2322.1 ID=mRNA_H-canaliculatus_F_contig12797.2322.1|Name=mRNA_H-canaliculatus_F_contig12797.2322.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12797:2719..3112- (Hapterophycus canaliculatus Oshoro5f female)
CCTCTCGTTGTTGTTGCTGCTGGTCGGACGGCTGGATCTGGCGAAAACGA
GCCCCCCTGTCTATTTTGGACCGCGCGTGTGGTTGAAGGCCTCTCGTTGT
TGTTGCTGCTGGTCGGACGGCTGGATCTGGCGAAAACGAGCCCCCCTGTC
TATTTTGGACCGCGCGTGTGGTTGAAGGACCCGTGCCCCTCTTCGGCGCG
GCTCTTGGATCTGCGTGGACGCGAAGGAGTGTGTGTGAGATGGGCGGGCC
TTACAGCTTGACCCGTGCCCCTCTTCGGCGCGGCTCTTGGATCTGCGTGG
ACGCGAAGGAGTGTGTGTGAGATGGGCGGGCCTTACAGCTTG
back to top