mRNA_H-canaliculatus_F_contig12785.2316.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12785.2316.1
Unique NamemRNA_H-canaliculatus_F_contig12785.2316.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12785.2316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12785contigH-canaliculatus_F_contig12785:1515..1821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size307
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928999.7955766-CDS-H-canaliculatus_F_contig12785:1514..18201622928999.7955766-CDS-H-canaliculatus_F_contig12785:1514..1820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12785 1515..1820 +
1696845644.74492-CDS-H-canaliculatus_F_contig12785:1514..18201696845644.74492-CDS-H-canaliculatus_F_contig12785:1514..1820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12785 1515..1820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12785.2316.1prot_H-canaliculatus_F_contig12785.2316.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12785 1515..1820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12785.2316.1

>prot_H-canaliculatus_F_contig12785.2316.1 ID=prot_H-canaliculatus_F_contig12785.2316.1|Name=mRNA_H-canaliculatus_F_contig12785.2316.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=102bp
VHAGDLVRGVDTDVNHDKFQARFRHPENSAPVFLFSPPIYCVQPSTRFHP
LNPKYFRSVFPSAIATHTCAFDFVVGGIRSLSPSPCDRKSCSTHTHNAHV
NN
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mRNA from alignment at H-canaliculatus_F_contig12785:1515..1821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12785.2316.1 ID=mRNA_H-canaliculatus_F_contig12785.2316.1|Name=mRNA_H-canaliculatus_F_contig12785.2316.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=307bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12785:1515..1821+ (Hapterophycus canaliculatus Oshoro5f female)
GTACACGCAGGCGATCTTGTGCGAGGGGTCGACACGGATGTCAATCACGA
CAAATTTCAAGCCCGTTTCCGCCACCCCGAAAATAGTGCTCCCGTGTTCT
TATTTTCGCCCCCCATATACTGCGTCCAGCCCTCCACGCGTTTCCACCCT
CTCAACCCCAAGTATTTCCGTTCCGTCTTCCCCTCTGCGATTGCGACACA
CACATGCGCGTTTGATTTTGTCGTCGGCGGAATTCGCAGCCTTTCTCCCT
CTCCATGCGATCGAAAATCGTGCTCGACACACACACACAATGCCCATGTG
AACAACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12785:1515..1821+

>mRNA_H-canaliculatus_F_contig12785.2316.1 ID=mRNA_H-canaliculatus_F_contig12785.2316.1|Name=mRNA_H-canaliculatus_F_contig12785.2316.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12785:1515..1821+ (Hapterophycus canaliculatus Oshoro5f female)
GTACACGCAGGCGATCTTGTGCGAGGGGTCGACACGGATGTCAATCACGA
CAAATTTCAAGCCCGTTTCCGCCACCCCGAAAATAGTGCTCCCGTGTTCT
TATTTTCGCCCCCCATATACTGCGTCCAGCCCTCCACGCGTTTCCACCCT
CTCAACCCCAAGTATTTCCGTTCCGTCTTCCCCTCTGCGATTGCGACACA
CACATGCGCGTTTGATTTTGTCGTCGGCGGAATTCGCAGCCTTTCTCCCT
CTCCATGCGATCGAAAATCGTGCTCGACACACACACACAATGCCCATGTG
AACAACGTACACGCAGGCGATCTTGTGCGAGGGGTCGACACGGATGTCAA
TCACGACAAATTTCAAGCCCGTTTCCGCCACCCCGAAAATAGTGCTCCCG
TGTTCTTATTTTCGCCCCCCATATACTGCGTCCAGCCCTCCACGCGTTTC
CACCCTCTCAACCCCAAGTATTTCCGTTCCGTCTTCCCCTCTGCGATTGC
GACACACACATGCGCGTTTGATTTTGTCGTCGGCGGAATTCGCAGCCTTT
CTCCCTCTCCATGCGATCGAAAATCGTGCTCGACACACACACACAATGCC
CATGTGAACAAC
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